Gcon016188.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01009634.1:736-10551[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00031 0.038 15.7 0.2 2 23 182 204 181 204 0.90 2 15 0.021 2.6 9.9 0.8 2 23 218 239 217 239 0.95 3 15 0.00036 0.044 15.5 0.4 1 21 245 265 245 266 0.94 4 15 0.00033 0.041 15.6 1.0 1 23 273 296 273 296 0.96 5 15 0.00079 0.098 14.4 0.1 1 23 445 467 445 467 0.98 6 15 0.00072 0.089 14.5 4.1 1 23 474 496 474 496 0.96 7 15 6.8e-06 0.00084 20.9 2.6 1 20 502 521 502 524 0.96 8 15 0.00058 0.072 14.9 0.3 1 23 530 553 530 553 0.91 9 15 2.3e-06 0.00028 22.4 0.6 3 23 565 585 564 585 0.98 10 15 9.2e-06 0.0011 20.5 4.2 1 23 591 613 591 613 0.98 11 15 2.3e-06 0.00028 22.4 0.5 1 23 619 641 619 641 0.96 12 15 2.6e-06 0.00033 22.2 0.7 1 23 647 669 647 669 0.98 13 15 1.1e-06 0.00014 23.4 1.4 3 23 677 697 675 697 0.96 14 15 2.4e-06 0.0003 22.3 0.7 1 23 703 725 703 725 0.99 15 15 8.9e-05 0.011 17.4 0.6 1 23 730 753 730 753 0.97
Sequence Information
- Coding Sequence
- ATGGTCGACGAGGTGATAAACTTGGACCGCGTCTGTCGCGGCTGCCTCGGCGAGGATGGCGAGATGCGCTCGCTGTTCACTGTGGAGCCCCTCGGCCATCACAGATTGCGTCTCAGTCAGATGCTCATGTCAAGCACTCAGATACAgatCCTGGAGAATGATGACCTGCCTTGCCAAATATGTGCGCATTGCACCCGGCAGCTTCACTCGGCCTTCACGTTCAAACACATGTGCGAGAGGTCGGAAGCCAGACTCAAGAGATTCCTGTCCAAGATTAATCCCGCACAGAAATCACTCCTGAACAGCAATCATGCATCAACAAATAATCATAATCAAGgaGTCAAACAAGAGTCTTCCAACCACAGTCTCATGGGAAACAATGACATCATAGACTTCAGTACCATGTTCAATTCGGACATTCCTTCAATAAAAATGGAAGCAAGGGAATCTTCTGATATACAACAATTAGGGAATGATGGAGACGATAAGAAAGCCCTGGGATTAACAGCCCACATGAAAAGGCActcaaaaaaagatattttgccGTGTTTAAAGTGTGGAAAGATCTTCACTGAGAAAGTATACCTTAAGAAACACACAGCAGAAATACACGGAAGAACTTCTAAAAAGTCAAATATCattaagGTGCTTGAATGCTCTGTTTGTAAAATATCTTGCCAAAATGTAGACCAGCTCAAAAGTCATCTGCTGGAacacaggaaaaaaaagaaCTTCAATTGTGAAAACTGTGACCGAGGATTCAACAAatCTTCGAATTTTGAAGATCATTTATTAAGTTGTAAGAGCGACAAAACACACCCATGCATGATgtgtaataaagtattttctaaATTGGAGGCTTTAACGTTACACACTAAAGTAACCCATGGAAAAGTCGAAAattcagacgaagtgattaaaaaaattgagccTATCACCATTGAAGTACCTGTTGATAATTTACCATCGCACGTTAATGGTGTGATTGATAAAAGTCCTGCAAGATCTCTAGAATATTCTAATATGGAAACATTGGGAGGCGGTGTGAACATCAAAGAAGAACCTCTGGAGGAATTGCTGGAAGAAGCGGAaagagaaaACTTGCTCTTGGATAAGGAAGAATGTGACAGTTTTAATGGTGTTTTCGATGATGGGGATGATCATATTGATGGCAGTGagGGTATGCAGTCGGATAGCTCAGAGTTTAACCACTTGAAGTTcaatacaaaaagaaaagttGGTCGACCGCCCAAAAGAGCCTTCGGTAGTAAACGCAAACATAAAATGCGGAGATTCAAGAGAGAATTTGATGAAGAAGGCGTTCTTCGTAAATATCCCTGCAATATGTGTCCTAAAATACTTTCCTCGAGGATCGGCTTCAAGATCCACATGGCCCGACATTCCGGTGAGACTCTCGTGCACTCTTGTTTGGTCTGCGCCAAGTCCTTCAGCCATCGCACCGAACTGAAGCGTCACGAGCTGAGCCACGCCACCTCCAAGAAGTACAAATGTGACACTTGTGATAAATCGTTTAATAGGGAGGATCATCTGAGCAAGCACATGTGGCAGCACATGGACAGGAAGCCATTTGAATGTGAGCTTTGCACTCGAGGGTTCATGCGACCTGAACATTTGGCACGTCACAAAGCTGCACTGCATTCCGGAAAAGAGAAGAATCCAAAGACTGCTTTCTGCCCCATATGCAATAGAGGATTTACCACGGAGAAATATTTAGAAACCCATATGAGAATGCACACGGGTGATAAGACCTTCACATGTAAAGTCTGCAACAAGTCCTTTAATTCCAAGTGGCATTTGAAGGAACATACAAAGTGGCATTCTGCAGAAAAACCATTCTTGTGTTCAGAATGTGGGCAAAGatTCATCCGAAATGACTATCTTGTGATTCACATGCGGCGTCACAAAGGCGAGAAACCATACAAATGCAAGTTCTGTGGCAAAGGGTTCCCCAGGGCCACCGATTTAACTGTCCATGAAAGGTACCACACCGGGGAGAAGACTCATCTATGTACCATATGTGGCAAAGGTTTCCAACGTCAGTACAACCTGACAGTGCACTTAAGGGtgcacactggtgaaaaaccatATGTATGTTCCTACTGTGGTAAAAGGTTTGCTCAAGGCAATGATCTCAAATCTCACGTCCGTCGCCACACTGGAGaaaggtacAACTGTGAGGTGTGTGGAGAAGGCTTTATTCAGGGCTACCACCTCACACAACACAAACGAAGCGTCCACGGAATACTTTGCCTATCGCACATAAGAAGAGTAGAGAAACATCCCCAGgcTAATCCCCAGAATAATCCTAATCAAATACCGAAACACCGTAGTCGCATTCCAACACAACTCCAGCAGGCCCAGCAGGCCCAGATGGCAGCGACCTTAACCAGCCAACTTCAGGCGGCCAGTCAGCTCCAAGTGGCCAGCCAACTGCAAGTAGCTCAACTACAGGTTTCTCTGTGA
- Protein Sequence
- MVDEVINLDRVCRGCLGEDGEMRSLFTVEPLGHHRLRLSQMLMSSTQIQILENDDLPCQICAHCTRQLHSAFTFKHMCERSEARLKRFLSKINPAQKSLLNSNHASTNNHNQGVKQESSNHSLMGNNDIIDFSTMFNSDIPSIKMEARESSDIQQLGNDGDDKKALGLTAHMKRHSKKDILPCLKCGKIFTEKVYLKKHTAEIHGRTSKKSNIIKVLECSVCKISCQNVDQLKSHLLEHRKKKNFNCENCDRGFNKSSNFEDHLLSCKSDKTHPCMMCNKVFSKLEALTLHTKVTHGKVENSDEVIKKIEPITIEVPVDNLPSHVNGVIDKSPARSLEYSNMETLGGGVNIKEEPLEELLEEAERENLLLDKEECDSFNGVFDDGDDHIDGSEGMQSDSSEFNHLKFNTKRKVGRPPKRAFGSKRKHKMRRFKREFDEEGVLRKYPCNMCPKILSSRIGFKIHMARHSGETLVHSCLVCAKSFSHRTELKRHELSHATSKKYKCDTCDKSFNREDHLSKHMWQHMDRKPFECELCTRGFMRPEHLARHKAALHSGKEKNPKTAFCPICNRGFTTEKYLETHMRMHTGDKTFTCKVCNKSFNSKWHLKEHTKWHSAEKPFLCSECGQRFIRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRQYNLTVHLRVHTGEKPYVCSYCGKRFAQGNDLKSHVRRHTGERYNCEVCGEGFIQGYHLTQHKRSVHGILCLSHIRRVEKHPQANPQNNPNQIPKHRSRIPTQLQQAQQAQMAATLTSQLQAASQLQVASQLQVAQLQVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -