Gcon028642.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01008954.1:33720-42565[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8e-05 0.0022 19.6 0.5 2 23 145 166 145 166 0.97 2 13 5.3e-06 0.00066 21.3 1.7 1 23 174 196 174 196 0.97 3 13 1.4e-06 0.00018 23.1 0.3 1 23 203 225 203 225 0.98 4 13 0.00021 0.026 16.3 2.1 1 23 256 278 256 278 0.98 5 13 3.7e-07 4.6e-05 24.9 5.7 2 23 286 307 285 307 0.97 6 13 7e-06 0.00086 20.9 1.5 1 23 313 335 313 335 0.99 7 13 5.1e-06 0.00063 21.3 0.4 3 23 343 363 341 363 0.96 8 13 4.7e-06 0.00059 21.4 1.3 1 23 369 391 369 391 0.96 9 13 0.00015 0.019 16.7 0.4 1 23 397 419 397 419 0.98 10 13 0.00076 0.094 14.5 0.4 1 23 425 447 425 447 0.97 11 13 4.5e-05 0.0056 18.3 4.1 1 23 453 475 453 475 0.98 12 13 1e-06 0.00012 23.5 1.5 1 23 481 503 481 503 0.99 13 13 2.6e-05 0.0032 19.1 0.3 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- ATGGAGGGCGTGCCGGCCGACCCGACCACCTACTGCCGGACCTGCATGGACCGCAATTCTGACGCGCTAAATAACTTCATCAGTTTCGTGACCGTCCCGGTCATCGCTGAAATGCTCATGTCCTGCACCGCGGTCCAGataaacGGTGAAGATGGCTTACCAGAACAACTCTGCAGCACCTGCGTCACAAACCTCACATCGGCATTCGAGTTTAAGAAGAGATGCGAGCAATCAGACGACGACCTAAGAAAATTGTTCAGCTTCTGCTCGCTGAAGACGGAGCCGATCGTTACCATAAAACAGGAACCTGCAGACATAAAACCGGAACTCGACTATATGGACGATGACGACTTTCAAAATTCAGACTATGAACCACTAAAagtcaaaaagaaaataaccaaaaaatctAGCGGCCTCACGCGCCGGAAAAATGAATGCCGCGTCTGTTCTAAAATATTCCCCAAGCCGAGTAAGCTCGCGAGACACATGAAGAGCCACGTTAAAGAAAACAACAAAGTCCATCCTTGCGAAATCTGCCACCGAGTCTTCGATAGAGCGAGCAAATTGGATAGGCACATCAAAATACACAATCCTGAACTGAAACCTTACGAATGCAACGTTTGTCCCAAACGATTCAAAAGAGAAAGTCTTTTATTGAGCCACGTAATAACGCACCCGCCCGCCATAACGGTAACCAACGGCGATACGGACATAACGATGAGCGTCAAGGAAGAAGCTCTCGATATCAAGTCTGAAGGGGATAAGTACAACTGTGATCAGTGCTCGATGATATTTGATTCAACGCACTCGCTGTCGGCTCACATGAGGAAACATCGGATCAAGAACCGAGTGTTGTCGTGTCACATCTGCGGGAAGGTGTTTAAGAAGTCCAGTCATCTGAAGCGCCACGAGAAGACTCACGAGGACAACCGGCCTTACAAGTGCAACCAGTGTGTTAAGTCATTCACGCAGGAACGCCAACTGTTAGAACACATCAACAAACACAAAGGCGTGAAACCGCATCTCTGTCCTGTGTGCAGCAAAGCCTTTGCCCAAACTAGTACGCTGAATGCTCACCTCCGGGTCCACACCAGAGAAAAGCCTTACCTCTGTGCCACCTGCGGGAAGCGCTTCGACAGCAGCACCAACCTCAACCAGCACCTCAAGAGACATCGCGGCGAGAAGACCTTCTACTGCACCCTGTGTCCCGGGAGATATGTCAGCAAGGGAGAGCTGCAGTCGCACATGTCGACGCACACGGGCGCGCGACCGTTTGTCTGTGACACGTGCGGGTCGGCCTTCACGAAGACCAACTCCCTGGCCAAGCACAAGCTCATCCATCTCGGGATCAAACCCCACGAGTGTGATGTCTGCGCAATGAGATTTAACAGCAAAGATCACCTTAAGCGTCACTACAGAATACACACCGGGGAGAAACCTTACAAATGTGAATTCTGTGACAGAGCCTTCACACAGAGTAATGATCTTGTGAAACACACGAGGTCACACCTGGGCGACAAGATGTACAGgtgTACGATCTGCCCTGAAGGTTTCCGACTCAAAACCGAACTCCGAAAGCACGTGTCAGTGCACTTTATGGACAAAAACATCAGCGGGGAAGATTCCTCTCAGGACAAGATGGAGAGAGAGATGAAGAAGGAGCCGGGCTACGAGGGCATGTCCATCGTGCAGCCGATGCCGGTGGAAGTGATCACAGACATAATGTCATAA
- Protein Sequence
- MEGVPADPTTYCRTCMDRNSDALNNFISFVTVPVIAEMLMSCTAVQINGEDGLPEQLCSTCVTNLTSAFEFKKRCEQSDDDLRKLFSFCSLKTEPIVTIKQEPADIKPELDYMDDDDFQNSDYEPLKVKKKITKKSSGLTRRKNECRVCSKIFPKPSKLARHMKSHVKENNKVHPCEICHRVFDRASKLDRHIKIHNPELKPYECNVCPKRFKRESLLLSHVITHPPAITVTNGDTDITMSVKEEALDIKSEGDKYNCDQCSMIFDSTHSLSAHMRKHRIKNRVLSCHICGKVFKKSSHLKRHEKTHEDNRPYKCNQCVKSFTQERQLLEHINKHKGVKPHLCPVCSKAFAQTSTLNAHLRVHTREKPYLCATCGKRFDSSTNLNQHLKRHRGEKTFYCTLCPGRYVSKGELQSHMSTHTGARPFVCDTCGSAFTKTNSLAKHKLIHLGIKPHECDVCAMRFNSKDHLKRHYRIHTGEKPYKCEFCDRAFTQSNDLVKHTRSHLGDKMYRCTICPEGFRLKTELRKHVSVHFMDKNISGEDSSQDKMEREMKKEPGYEGMSIVQPMPVEVITDIMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00800339; iTF_00801124; iTF_00799440;
- 90% Identity
- -
- 80% Identity
- -