Gcon020076.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01038193.1:6995-24553[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8 3.5e+02 3.2 0.2 8 21 20 33 19 35 0.91 2 19 0.015 1.8 10.4 0.2 2 23 42 63 41 63 0.96 3 19 3.3e-05 0.0041 18.8 2.0 1 23 69 93 69 93 0.97 4 19 0.00021 0.027 16.2 0.2 1 23 99 121 99 121 0.97 5 19 0.0004 0.05 15.3 2.8 1 23 127 149 127 149 0.95 6 19 1.9e-05 0.0024 19.5 0.9 1 23 155 177 155 177 0.98 7 19 0.00073 0.09 14.5 1.6 1 23 183 205 183 205 0.98 8 19 4.4e-06 0.00054 21.5 1.1 1 23 211 233 211 233 0.98 9 19 3.2e-05 0.004 18.8 0.5 1 23 239 261 239 261 0.98 10 19 0.025 3.1 9.7 3.8 1 23 267 290 267 290 0.94 11 19 0.00014 0.017 16.8 0.9 2 23 713 734 712 734 0.97 12 19 2e-06 0.00024 22.6 2.5 1 23 982 1004 982 1004 0.98 13 19 8.4e-05 0.01 17.5 0.4 1 23 1010 1032 1010 1032 0.95 14 19 1e-05 0.0013 20.4 4.2 1 23 1038 1060 1038 1060 0.99 15 19 2.4e-05 0.003 19.2 2.1 1 23 1066 1088 1066 1088 0.98 16 19 1.7e-05 0.0021 19.7 1.4 2 23 1095 1116 1094 1116 0.97 17 19 1.2e-05 0.0015 20.1 0.1 1 23 1122 1144 1122 1144 0.98 18 19 2.6e-05 0.0032 19.1 0.7 1 23 1150 1172 1150 1172 0.97 19 19 0.00097 0.12 14.1 2.4 1 23 1178 1200 1178 1200 0.98
Sequence Information
- Coding Sequence
- ATGGCACAGATTGTTAGTATTGATGTGAATCaaaggttcgaatcccacgaATTCCAAAAggaattcaataacaaaaataccCTGGAAGATCACATGAAATGCCACATTGAAAAGTGTTTCCTTGTGTGTGATCGTTGCCCCAAGAGCTTCTTGCTTAAACGAGACCTTGAAGAACACGTGCGAAGTCACAccgaaGACAATGTGTTTGTTTGCTCGGTCGCCACGTGCGGCCGATCGTTCAAAACCAGTCACAGGCTTAAAGTGCATCTGAGGAGCCACACGGGGGAGACTCCTTATATCTGCCAGTACTGCTCTAAAGGATTCAGACAGATGATTCAGCTAAATGACCACATAGCAATACACACAAATGAAAAAACACACTTTTGCAAGCTGTGCAATAAGCCATTCAAGACAAACAGGGCACTTAAACTTCACGAGCAGGTCCATCGATCCGAGAAGACTTACAAATGTGAAATTTGTGACAAGACGTTCCAGTATTATACGGGACTGAAAGTTCACATTGAGAGACATTCCGGCATAAAGGCCTTCAAGTGCGGCTTCTGCTCCAAGCATTTCTTCACGCAGCCCCAGCTCGCCGTCCACCTTCTGGTTCACAGCGATAACAAACCATTCACTTGCGACACCTGCGGAAAAACATTTGCCagaaaACAAGTGTTGAGAACGCACATGACCGTTCATTCCGGCGAGCGTTCTTACATGTGCGACGAATGCCCCAAGATATTCGCCTACAAGAGCGACGTCAAGAAGCACAAGCAGATCCACACGGGCCTCAAGCCTCACAGCTGCCATCTGTGCGCTGCGGCCTTTGGAAGAGCCGGACATCTCAAGAGACACGTACAACACGTGCATGGAAAGAAGGACAATAACGCAGCAGTGGAAGTTGTAGAGAGCTCAGAAGAACTTCAAGGAAGCGAAGAGTTCTTGCGaaagaaatttacaaaaatttcgAAAAATATGGAAGATACTCATGGCATTCAAATAGTAGATAACGAGGTTTATTTTGATTGTGGTGTGGAGGATAGCAGAAATTTGGTTAATGAAGGTTGTAAGATTGATGGTGATAGTAGAAAGGCTGTAGTTTTAAATACACTagaatataatgttaaaaatacggTTGTTGAGAAAAAGGTGTTACGAGATGATGATGTGGTTGAAATTTTTGAAAGGAACGTATATGATAGAAAGAACGTGGTTGTTCAAAATTGTGATGAATGTAAGGATGATGTAAATTGTGAGATTGTTGTTTTGCGAGATGACGGTAATAAGGATGTTGAAATTACTGAAGATACTGAAATGGATAAAGGTAGCGAGGAAAAGGTTAGATATTACGATGGTGATTGTGGTTACAAGGATTACCAGGATGTTGACGatgatcataaaataaaaatgggtgTTGATGGAAGTGATTTAAATGTTGAAGTCGTGGTTTTAAGAGACGGCAGTGAAATAGATGGCATTTGCTTTGGTGGTGATGGTAGAATGCTGAATCGTAGATGTTTCAATGAAAATTCTGTTGAGGTTAAAGTCAATGATGTTAAAGATCCAAATGTGAATTTGGAAGTAGTCGTTGTAAGAGGCAATGAaagaatggaatattttaacaatgaaatgaaaaatcagAATTCtttcaaatcaagaaaaagacATGCAGTCATTAATGATAGTAGTGCAAGTAATGATGCGGTTATTTTAAAAGCCAATGAAGGTGCAGAATATTTGAGTAATGATTTGAAAAGTCAGAATTATTTTGACGAACGGGCTCATAACGgtGATCTTAGGAATAAGGTTAACGTTATAGTTGTGGATGGAATCGAATACACTGTTATAAGAAAAGATGATACGGTAAACGATTTGAGTGTTGAGGTAAGTGTGCCAGTTTTGGAAGAAGATGAAACAGGGAATACAGAAGTTGGATTGGAAGAGACGGATAGTCTTGTAGAAGATAGTTGTGAAGCTGTAGTCAAAGAAGAGAGCTGCAATGCtgctttatattatacaatgtcAAAGGCCAAAGAAATCAAACCAAAGGAAACAAATGCAATAgaacaaattttattcaaaaatgcaGTCTCCACAGAAGCAAAAGAGCTTAAAGATTCATGTGCCCTGCCTTGGCAATGCGGCCTGTGTGACCACGGCTTCACAGACAAATACTCCTTGACAGACCACGTCAAGTCTCATGCTATCGGAGTGCCATCTATTAGTGAATTTGGAATTAAATtgGTTAAGAACAAAAAGTCTGGCCTCGTAGAAGAGAGGCATGTGAAAACAAGACCTGCATTGAAACGAGCAACAGAAGAAGAACTAAAGCCTCTATATTACACATGCTTCAAACATGACAAGAACAtccaaatcaatgaaaaaaaaacgaatagaaaacaaattaaaaataatatttttataaataaattaaatgatttcaaAAGTGAATCTGATGGGAAAACTTATCATAAAAGAACCAGCGATAATAATGTTGATAATGAAGATACAATGTCCGTTATATCAGAACAATTTGAAAATGATGTTAAAGACGACTTGCAAGATTTTTGGAAGAACCGCGGTTCAGATTTTGCTGTGGTCGTTTGGGATAAGGAAAGAGGCGAAGGCGAGGTGCTGGATGAAGGAACATATGAAGATCGTGGTTATAAGGATGTTGAGAATGATGGTGATGGGTTATTGGTGGTCATCATTGGAGATCATGCTTTAgaaaatgttcaaaatgaaaAGTTAGATAATGATTCAAATGTGGAAAATGATCAAACCATTGAAGAAGATTTCGCATCCGATacgaaagaagaagaaaagatgATGACAAATGTTTGTGATGGAATCAAAACAAGACAAAATGTGGAGGCTATCAAAAGAGAAGATGTTGAAGTAAAAAGAGTCATCAAGAGAAGGGGAAACAGAGGCGTGAAAGAGTTCCCCTGCAAGGAATGTGGAAAGATCTTCAGGTACTCTCATTCTCTGCAAGTTCACACGCGCAGTCACACGGGCGAGCGACCGCACGCGTGCGACACGTGCGGGCGCGGCTTCAGCCAGCGAAGCACTCTCTTGGCGCACGCGGCACGTCACACAACGGCCATGGCCTACCAGTGCAGCCACTGCGGTCGAGCCTACTCCACCTTGCACTCTTTACAGATCCACACTAGAAGTCACACCGGCGAGAAACCCTACGAGTGTGAAGTTTGCAGCAAGAGATTCACCCACCGACTCGGCCTAAAGACTCACATGAATATTCACACCGGGGAGACGCCGTGGAAGTGTGAGTTTTGCTTCAAAGGATTTAAACAACCGTCGTCTCTGGTGACCCACCGTAGAACGCACACTGGCGAGCGCCCCTTCACCTGCTCTTCTTGTCCCCAGGCATTCGCCCAAGCGTCGGCTCTGAGGCAACACCTAAGAGTCCACACCGGGGAGAAACCTTTCGAATGTTCGatATGCAAGAGGGCGTTTCGCAATCGCAGCGATATGGTGAAGCATGAGCGCGGCCACAGCGGGGCGCGGCCGTTCCAGTGCGAGACTTGTGGCAGTGCGTTTGCTAGGAAGAGCCATCGAGACCGCCACACGCTCACCCACCGCGGGCGTACCACAACCAAGTCCAACAATGACACCCAAGAAAAAGTATGA
- Protein Sequence
- MAQIVSIDVNQRFESHEFQKEFNNKNTLEDHMKCHIEKCFLVCDRCPKSFLLKRDLEEHVRSHTEDNVFVCSVATCGRSFKTSHRLKVHLRSHTGETPYICQYCSKGFRQMIQLNDHIAIHTNEKTHFCKLCNKPFKTNRALKLHEQVHRSEKTYKCEICDKTFQYYTGLKVHIERHSGIKAFKCGFCSKHFFTQPQLAVHLLVHSDNKPFTCDTCGKTFARKQVLRTHMTVHSGERSYMCDECPKIFAYKSDVKKHKQIHTGLKPHSCHLCAAAFGRAGHLKRHVQHVHGKKDNNAAVEVVESSEELQGSEEFLRKKFTKISKNMEDTHGIQIVDNEVYFDCGVEDSRNLVNEGCKIDGDSRKAVVLNTLEYNVKNTVVEKKVLRDDDVVEIFERNVYDRKNVVVQNCDECKDDVNCEIVVLRDDGNKDVEITEDTEMDKGSEEKVRYYDGDCGYKDYQDVDDDHKIKMGVDGSDLNVEVVVLRDGSEIDGICFGGDGRMLNRRCFNENSVEVKVNDVKDPNVNLEVVVVRGNERMEYFNNEMKNQNSFKSRKRHAVINDSSASNDAVILKANEGAEYLSNDLKSQNYFDERAHNGDLRNKVNVIVVDGIEYTVIRKDDTVNDLSVEVSVPVLEEDETGNTEVGLEETDSLVEDSCEAVVKEESCNAALYYTMSKAKEIKPKETNAIEQILFKNAVSTEAKELKDSCALPWQCGLCDHGFTDKYSLTDHVKSHAIGVPSISEFGIKLVKNKKSGLVEERHVKTRPALKRATEEELKPLYYTCFKHDKNIQINEKKTNRKQIKNNIFINKLNDFKSESDGKTYHKRTSDNNVDNEDTMSVISEQFENDVKDDLQDFWKNRGSDFAVVVWDKERGEGEVLDEGTYEDRGYKDVENDGDGLLVVIIGDHALENVQNEKLDNDSNVENDQTIEEDFASDTKEEEKMMTNVCDGIKTRQNVEAIKREDVEVKRVIKRRGNRGVKEFPCKECGKIFRYSHSLQVHTRSHTGERPHACDTCGRGFSQRSTLLAHAARHTTAMAYQCSHCGRAYSTLHSLQIHTRSHTGEKPYECEVCSKRFTHRLGLKTHMNIHTGETPWKCEFCFKGFKQPSSLVTHRRTHTGERPFTCSSCPQAFAQASALRQHLRVHTGEKPFECSICKRAFRNRSDMVKHERGHSGARPFQCETCGSAFARKSHRDRHTLTHRGRTTTKSNNDTQEKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -