Gcon007783.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01015660.1:41614-56139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.6e-06 0.00094 20.8 7.1 1 23 20 42 20 42 0.97 2 20 7.4e-08 9.2e-06 27.1 2.7 1 23 48 70 48 70 0.98 3 20 5.5e-05 0.0068 18.1 6.7 1 23 76 98 76 98 0.97 4 20 2.3e-05 0.0028 19.3 5.3 1 23 104 126 104 126 0.97 5 20 1e-07 1.3e-05 26.7 3.0 1 23 132 154 132 154 0.98 6 20 4.6e-06 0.00058 21.4 7.7 1 23 160 182 160 182 0.98 7 20 3.9e-06 0.00048 21.7 7.0 1 23 188 210 188 210 0.98 8 20 6.9e-07 8.5e-05 24.1 4.9 1 23 216 238 216 238 0.98 9 20 2.1e-07 2.6e-05 25.7 5.0 1 23 244 266 244 266 0.99 10 20 9.2e-07 0.00011 23.7 3.7 1 23 272 294 272 294 0.97 11 20 3.2e-06 0.0004 21.9 6.0 1 23 300 322 300 322 0.98 12 20 4.4e-08 5.4e-06 27.8 3.9 1 23 328 350 328 350 0.99 13 20 5.1e-07 6.3e-05 24.5 5.6 1 23 356 378 356 378 0.98 14 20 7.6e-07 9.4e-05 23.9 3.8 1 23 384 406 384 406 0.99 15 20 7.9e-08 9.8e-06 27.0 4.2 1 23 412 434 412 434 0.98 16 20 1.3e-05 0.0016 20.1 7.7 1 23 440 462 440 462 0.98 17 20 6.5e-05 0.0081 17.8 6.8 1 23 468 491 468 491 0.95 18 20 6.4e-05 0.008 17.9 0.3 1 23 497 519 497 519 0.97 19 20 0.016 2 10.3 4.3 1 23 529 551 529 551 0.99 20 20 8.7e-07 0.00011 23.7 2.4 1 23 557 579 557 579 0.98
Sequence Information
- Coding Sequence
- ATGAGACATGAGACGTGTAGGGTAAGCTTGACTGAATGTCCCGCAGGCGAGACCCCCCACCACTGCCAGGTGTGTGGCAAGAAGTACACCCGCAAGGAGCACCTCGCCAACCACATGCGCTCGCACACCAACGACACCCCGTTCAGATGTGAGATTTGCGGCAAGTCCTTTACCAGAAAAGAGCACTTCACCAATCACATCATGTGGCACACCGGCGAGACCCCGCACCGGTGCGACTTCTGCTCCAAGACCTTCACCCGCAAGGAGCACCTGCTGAACCACGTCCGTCAGCATACGGGGGAGTCACCGCATCGCTGCGCCTATTGCTCCAAGTCCTTCACGCGGCGCGAGCACCTCGTCAACCACGTGCGGCAACACACGGGGGAGACGCCCTTCCGCTGCACCTACTGCCCCAAAGCCTTCACCCGCAAGGATCACCTCGTGAACCACATCAGACAACACACGGGAGAATCCCCCCACAAGTGCACTTACTGCTCCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACCGGGGAGTCCCCGCACCGCTGCGGCTACTGCTCCAAGTCCTTCACCAGGAAGGAGCATCTCACCAACCACGTCAGGAAGCACACCGGAGAGACCCCCTTCACCTGCAGCTATTGCACCAAGGCCTTCAGCAGGAAGGAGCACTTGACCAACCACGTCAGGAAGCACACTGGAGAGACTCCCTTCACCTGCAGCTATTGCACCAAGGCCTTCAGCAGGAAGGAGCATCTGACCAACCACATCAGGAAGCACACCGGTGAGACTCCCTTCGCCTGCAGCTATTGCACCAAGGCCTTCAGCAGGAAGGAGCACCTGACCAACCACGTCAGGAAACACACGGGAGAGACCCCATACAGCTGTACGTACTGCTCCCAGTCCTTCAGCAGAAAAGAGCATTTGAACAATCACACCAGGAAGCACACGGGGGAGACTCCCTTCACCTGCACGTACTGCCCCAAGGCCTTCAGCAGAAAAGAGCACTTAACCAATCACATCAGGAAACACACGGGAGAGACCCCTTACAGCTGTACTTACTGCACCAAGTCCTTCAGCAGAAAAGAGCACTTGAACAACCACGTCAGGAAACACACCGGTGAGACTCCCTACAGCTGTAGCTACTGCTCCAAATCCTTCGGCCGGAAGGAGCATCTAACCATTCATATCAGGAAACATACGGGGGAGACACCTTACAGCTGCACCTACTGCTCCAAGTCCTTCAGCCGCAAGGAGCACCTCAACAACCACATCAGaatACACACCGGGGAGTCCCCCCACCGCTGCGAGTTCTGCCAGAAGACCTTCACCCGCAAGGAGCACCTGACCAACCACCTTCGTCAGCACACGGGAGACACGCCGCACTGCTGCAACGTCTGCAGCAAGCCCTTCACGCGCAAGGAGCACCTCATCAACCACATGAGcCGGTCGCACACGGGCGAGCGACCGTTTGCCTGCGAAGAGTGCGGCAAGTCCTTCCCTCTGAAGGGCAACCTGCTGTTCCACCAGCGCTCCCACAACAAGGGCGCGCAGGCGGCCCGGCCCTACCGCTGCGACCTCTGTCCCAAAGACTTCATGTGCAAAGGTCACTTAGTGTCTCACCGTCGTTCACACACAGGGGAGCGGCCGCACACGTGCGAGCAATGCGGCAAGACATTTGTCGAGAAGGGGAACATGCTGCGGCACATGCGCAAGCACGAGGCGGAGGCCGGCGGGGAGGCGCAGCCCGGGGAGGCCGCGCCCAGCCTGGCGCCCCCGGGCC
- Protein Sequence
- MRHETCRVSLTECPAGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCAYCSKSFTRREHLVNHVRQHTGETPFRCTYCPKAFTRKDHLVNHIRQHTGESPHKCTYCSKSFTRKEHLTNHVRQHTGESPHRCGYCSKSFTRKEHLTNHVRKHTGETPFTCSYCTKAFSRKEHLTNHVRKHTGETPFTCSYCTKAFSRKEHLTNHIRKHTGETPFACSYCTKAFSRKEHLTNHVRKHTGETPYSCTYCSQSFSRKEHLNNHTRKHTGETPFTCTYCPKAFSRKEHLTNHIRKHTGETPYSCTYCTKSFSRKEHLNNHVRKHTGETPYSCSYCSKSFGRKEHLTIHIRKHTGETPYSCTYCSKSFSRKEHLNNHIRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGDTPHCCNVCSKPFTRKEHLINHMSRSHTGERPFACEECGKSFPLKGNLLFHQRSHNKGAQAARPYRCDLCPKDFMCKGHLVSHRRSHTGERPHTCEQCGKTFVEKGNMLRHMRKHEAEAGGEAQPGEAAPSLAPPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00751329; iTF_00675274; iTF_00897999;
- 90% Identity
- iTF_00751329;
- 80% Identity
- iTF_00751329;