Gcon014112.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01069970.1:484-2053[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.66 3.7e+03 -1.0 0.0 20 29 36 45 34 46 0.88 2 2 2.3e-17 1.3e-13 51.7 0.0 1 42 123 165 123 168 0.94
Sequence Information
- Coding Sequence
- ATGAGAGTCGGTCACCCGCAAGAAGAAACGTCCACTCAGGGAACTCAACAAGGTTCGCAATGGACATTGATGGACCACGGCTACCCGCGATACACGTCTACCCCGTGCCAAGCCAACAACATTCATGGCATATCCACCATCAACATGAATCAAATGCACTCGCAAGACCCAGGCCTGCACACGTTTGGAATGCAATCCATGATTAATCCCTACGACTACCAATCATCCAATCAAGCTCAGATCCACGCTGAAGAGATGGACCCAAACTCGCCAGGCCCTTCTTGTCCCAACGCCCTGCCGCACGTCCTCAATGAGACCCAACAAACGGCACCGGTACCCAAACGTCGAAGAACCTCCAATCCACAATCAGAAGAAAACTTTCAGAGAGCCCTGGAAGCCGTCAGGTTTGGCGGCATCGGCTTCTGCAAAGCTGCCCGATTATTCGGAGTCAACAATCGGACACTTTGGCTCGAATACAAGAAAAAAGGATATCCTAATAACAGGCCAAGTATTAAGAGCAGAATCAAGCAAGAGCACTCGTCACCGCCGCCTGAAGCGCGGGAAGAGCTGACCGGGGCGCCGGAGCAGCAGCTCACCCTCCTCTGTCCTCCACACCCGGTCAGCATGATGGGCTTCATAGACTCCCGCCACGTGGACTTCACGCAAGGCATCAATAACATCAGCCGCCCGCGCTTTGCCGAGGACAACATAAACATACACAACTCACCCATAAACTTGCACGGTATCAACTTTAACTCCATTTAA
- Protein Sequence
- MRVGHPQEETSTQGTQQGSQWTLMDHGYPRYTSTPCQANNIHGISTINMNQMHSQDPGLHTFGMQSMINPYDYQSSNQAQIHAEEMDPNSPGPSCPNALPHVLNETQQTAPVPKRRRTSNPQSEENFQRALEAVRFGGIGFCKAARLFGVNNRTLWLEYKKKGYPNNRPSIKSRIKQEHSSPPPEAREELTGAPEQQLTLLCPPHPVSMMGFIDSRHVDFTQGINNISRPRFAEDNINIHNSPINLHGINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -