Gcon026261.1
Basic Information
- Insect
- Glossosoma conforme
- Gene Symbol
- -
- Assembly
- GCA_003347265.1
- Location
- PZYU01006383.1:74123-78101[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 9.2e-08 33.0 0.0 4 39 209 245 206 249 0.90 2 4 4.5e-12 2.6e-08 34.7 0.1 2 39 261 298 260 301 0.93 3 4 4.8e-16 2.7e-12 47.5 0.0 2 45 316 360 315 360 0.97 4 4 6.9e-18 3.9e-14 53.4 0.0 1 42 367 409 367 411 0.95
Sequence Information
- Coding Sequence
- ATGACTGGCCATCCCGACTCGCCCGCGCTGTCGCCCAGCGGTGCAGGCGGAGCCGAGAGTCACGAGGACATCAGATCCTCCGAGGAGTGCGGAGCAGCCGCAGCTATGCACACAATGGCCACAGCACAGTCACCGCACCAGCCATTGTTATATCAGCTTCAAAATGTCGGAAATACAAGTGAAATAAGTAATTGTATTGAGTCAGAATATGCCTTGCCCGTTCCGATGGCGCCGACTGCTACCCCTGTGCAAGTTTCTTCCATCACTTTGGATCCTAATGAATCATCCACATTGAGACAAGACGCTGCACTTGGAAATGATTCAACAAAGGATATCAAGATAAAATTTGAAACGTTAAGATCATTGGACCATAAAGTTACATTAGATATGGATTCACATATGAATCAACTGACACATAATCCAATAACTAAGCTTGAATCACATTCTTCCATCTTGATTACTTCAGAGTTGTTGGGATTAATTCCAGGAGAACATGATATGAGCAATGAAGGTGCTCCTGGAAATGATGACTGCAGCGAGTTATCTGGTGATGGAATGCACAACATGGGAGGGCTAATGGGTCAGCATGGTCTAGGAAGCGGTCCAAAAACATGGTCTCAGCAAGATATGGAAAATGCTTTAGATGCTTTGCGAAACCACAACATGAGTCTTACAAAGGCATCATCCACATTTGGGATTCCTTCAACAACCTTATGGCAAAGAGCACATAGATTAGGCATTGACACACCTAAAAAAGAAGGCCCATCAAAATCTTGGAGTGAAGGGAATCTTCATAGTGCACTTCAAGCATTGAGAACCGGCACAATATCTGCAAATAAAGCCAGCAAAGCTTATGGTATTCCAAGTAGTACTCTTTACAAAATAGCAAGACGTGAAGGCATTAGATTAGCAGCACCGTTCAATGCAGCGCCCACAGCCTGGCGACCAGGAGACTTGGAGAGAGCTTTGCATTCTATTCGGTCGGGACATTCATCAGTTCAGAGAGCTTCAACTGAATTTGGCATACCAAcagGTACACTATATGGAAGATGTAAAAGAGAGGGCATAGAACTTTCTCGTTCTAATCCTACACCGTGGTCTGAAGATGCTATGGGAGAGGCATTAGAAGCTgtgagAATTGGGCAGATGTCAATAAATCAGGCCgctattcattataatttacctTATTCCTCCTTGTATGGTCGCTTCAAGCGTTGTAAATATGAAGGAGAAATCATTAGTGGCGTAGAATCTTCTTTACAGCCTCATGTTAGTCATGACCATCTTACCAATCATCAGATAAAACAAATGACCGAATGTCCTTATCAGATAATACAGCAGCCCGTGCTGGGTCCTCACAACCACATGCAGGATCACAACATGCAACAGGAGTCGCAGAGACACTTGTACTCCGTGTACCATCACCCGCTGGCCATGCAGCTGCCCATCCACGACCACTCCGAGCCCAACAATGTCCCACACAACAACCAAGACTGCATCCCCATAAGCTAA
- Protein Sequence
- MTGHPDSPALSPSGAGGAESHEDIRSSEECGAAAAMHTMATAQSPHQPLLYQLQNVGNTSEISNCIESEYALPVPMAPTATPVQVSSITLDPNESSTLRQDAALGNDSTKDIKIKFETLRSLDHKVTLDMDSHMNQLTHNPITKLESHSSILITSELLGLIPGEHDMSNEGAPGNDDCSELSGDGMHNMGGLMGQHGLGSGPKTWSQQDMENALDALRNHNMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHSALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYEGEIISGVESSLQPHVSHDHLTNHQIKQMTECPYQIIQQPVLGPHNHMQDHNMQQESQRHLYSVYHHPLAMQLPIHDHSEPNNVPHNNQDCIPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -