Gpap009117.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- grau
- Assembly
- GCA_000818775.1
- Location
- Scaffold113:216699-227032[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.7 2.9e+02 2.4 5.2 2 23 255 277 254 277 0.95 2 19 0.069 5.4 7.8 1.2 6 23 286 303 286 303 0.99 3 19 0.0024 0.19 12.4 1.2 1 23 309 332 309 332 0.95 4 19 6.4e-05 0.005 17.4 1.7 1 23 340 363 340 363 0.95 5 19 0.37 30 5.5 1.0 2 23 384 406 383 406 0.94 6 19 0.011 0.87 10.3 0.1 6 23 415 432 415 432 0.99 7 19 0.0013 0.1 13.3 0.8 1 23 438 461 438 461 0.96 8 19 0.018 1.4 9.6 0.4 1 23 469 492 469 492 0.91 9 19 1.4 1.1e+02 3.7 1.2 3 23 528 548 526 548 0.95 10 19 0.16 13 6.6 1.9 2 23 869 891 868 891 0.93 11 19 0.055 4.3 8.1 2.5 6 23 900 917 900 917 0.99 12 19 0.0025 0.2 12.3 2.1 1 23 923 946 923 946 0.95 13 19 0.003 0.24 12.1 2.8 1 23 954 977 954 977 0.91 14 19 0.02 1.6 9.5 0.2 2 23 998 1020 997 1020 0.95 15 19 0.056 4.4 8.1 0.3 6 23 1029 1046 1029 1046 0.98 16 19 0.00099 0.078 13.6 0.4 1 23 1052 1075 1052 1075 0.96 17 19 0.057 4.5 8.1 0.8 1 23 1083 1106 1083 1106 0.94 18 19 0.01 0.81 10.4 0.3 2 21 1112 1131 1111 1132 0.94 19 19 1 82 4.1 1.6 3 23 1136 1156 1134 1156 0.96
Sequence Information
- Coding Sequence
- ATGATTTGTCGATTGTGTTTAAAAGAAGTTGATAAATACATCGCAGGCAATATACTGGATGTGCCGTATGTAATTGGAAAATATTTCTGGTTTGAGCTTCAACAAAACGACCCAATATCAGCAGCAATTTGTGATAATTGTTGGGGTAAAGTTTCTGATTTTCATGAGTTCTACAAAAGTATTGAAAAAGTTCATGGCAGGCTAAGCGAAAATGTTATAGTTAAAATTGAAAGCCCTGGTAAAGAACACGCGATAGAAAGTGTAATGATTCAATCATTTCCATTGTCAAGTAAAAAAGAATCTGATGATTATTACACCAAAGTTAATGACGAAGTTCCTTTTGATATGTTGATTGAGAGCACTGATGACAGTATTCGTAATCAAAGAATTGAAGATTCACGTGATATATTAGGAACCGAAAGTTTTGATGCAAACGATTTAGAGGATGCTGATGGTGCCGCTACTTGCAAAGATGAAAAATATTGTAGCAATAGTGATAACCCATCTAATGTTGAAGATATCATGAAAGATGGAAAAGATAATAAGCTAACGAAAAAGAAGAAATTTACTAAATCCGTGAGAACAACTGCAACTAAGATTTCTTTGACCAGGTTACGACaaaataatacggatggtaaaataaaatcagagaaaactcaaaaacgcaatttaaaaaaagcaaagaaatcatcggaacaatcaaaaGCAGATAGTGACCAAAGTATAGCAATCGACGAAGAGATAGCGAAGTTTATGTCATTACATTGCGATTTGTGCAAGTTCGCGGCTACGAATTTTAACTCCCTTCATAGCCATATGCATACAGAGCATAAAATCAAAGGTTACGTGAGATGTTGTAATAAGAAATTTTCCAAACGTTTCTTATTGCTGGATCACGTACGCCAACATTCAAATCCTGAGTGTTTCAAATGTGAACAATGTAATCGTGTGTATGCTGATCGCAATTCTATGCGCATTCATTTCCTCAGTAAACATAAAAAAGACGAAGATAAAATGTTTACTTGCTCTCAGTGCCCCAAAAAATTCTTTAGAAGATATTCCCTAAGACAGCATGAATTAGTTGGTCATAGTGATCACAAGAACGCATGTTTAGCCGTTGATGAAGAGATAGCAAAGTTTATGTCGCTGCATTGTGAACTATGCAAAACAGAAGCAAACAATTTTACAAGTCTTAAAGGTCATATGCGTGCTGAGCATAAAATCAAAGGTTATGTAAAATGTTGTAATAAAAAATTTCGTGAACGTGGTTTACTTGTTGAGCACATACGCGTACACTTCAATCCCGCCTGTTACAAATGTGAAGAATGCAGTCTTGTTTTTCCCGATCGACAATCTATGCGTAATCATTTCCTTATGAAACATCCAAAAGTCGAAGACAAGCCTTTTGCTTGTTCGCAGTGTTCCAACAAATTTGTTACAGTATATTTATTACAGCGACATAAAGCGCTCGCCCACAGTGATCAATCGACAACTTGTAGCAGTTGTTGTAAGAGGCAAGTTGTTCGTGAAATGTTTGACAGTGCAGCTCAGCTGTCTGCTCATATCAGAGAGCAGTGCTTGTGCGATACATGCGCGGAAGTTGTATGTGGGACTGTTGCCCTTCAACGCCACCTTCTAAAACATaaaaaaaGCTTTACTGAAGGAAAGGAAACTGAAATTCCTGATATTTCTAACAAGACATCACCTAGTCAACAAGGCAAATCAATTCGTAAATCCTGCTTTCTCAATTCTTTAAGTGCAAGTGAATGCAATACGCCGTCGGTGCACGAAAAGTTTCCATTACAATCAACAATGATTTGTCGCTTGTGCTTAAAAGAGGTTAATGAATTTAAAAGTGCATTTGCCGTGACGGAGAATAAACCAACCATGGCTTCAGTAGTCAGAATTCATTTCTGGTTTGAGCTGCAACAAAACGATCCCATATCAACAGTAATTTGCAATAGTTGTTGGTGTAAGGTTTCCGATTTCCATGACTTCTATAAAAGCGTTGAGGAAGCTCAGAGTCATCTGGGAGAAAATGTCACAGTGAAAATTGAGAACATTAGCGCGGAGCATTCCATAGAAAATGTGATGATTCCATCATTTTCATTGTCGAGTAAACAGGAACCCGAAGTCAATTTCGACGAAGTTAATGATGAAGTTCCTTTTGACATGACGACGGTTGAAACTCCTAGTACGCGTACAGATCTCAGAACCGACGACTCCCATGACATATGGAGAAGCCaaaaaaaCAGTGATAACAATGCCATTGAGGATATCAAAGACATCATTGACTATAAAGATGAAATATTCAGTGATCATAACTCCGACCCGGTTAACAGAACAACTTTTGCAgaaaatgaagaaagtaataaagtaaccataaacaaaaaaggaataaataaaactaataaatTGTCAGTTAAGGCACAACGGAAAGTCCCGCTAGCACAGAAAATTCATTGCAAAAACGGACGTGCAGCAAAAGTGCCTGAAGTAGAAAAGAGCAATGTCaaaaaaaCGAAGGAACTCTCTGAACAAGCTAAAGCTATTCGTGAGCAGGGTTTAGCCTTTGACGGAGAAATCGCCAAGTTTATGTCATTGCATTGCGAACTGTGTAAAGTAACGGCTACGAATTTTAGCTCCCTTCATACCCATATGCTTGCAGAACATAAAATCAATGGTTACGTGAGATGTTGTAATAAGAAATTTTCGAAACGTTTCGCACTTCTGGATCACATACGGCATCATTCAAATCCTGAGCGTTTCAAATGTGAGCAATGCAATCGTGTTTATGCTAATCGAAATTCAATGCGCACTCATTTCCTTAGCAAGCACAAAAACGACAAAGAGAAAGTATTTACTTGTTCTCAGTGCCCTCAGAAATTTTTCAAAAAGTATTTACTAAGAAAACATGAACTGTTCGGGCATAGTGATCATAAAAACGCCTGCATAGCCGTCGATGAGGAGATAGCCAATTTTATGCCATTGCGTTGTGAGCTGTGCAATGAGGAGTCTACGAATTTTACAGCTCTTAAAGGACACATGCGCGATGAACACAACGTCAAAGGCTACGTCCGATGTTGTAATAAGAAATTTTCTGAGCATGGTTTACTTGTTGAGCACATACGCGCCCATTTAAATCCTGCATGTTATAAATGTGAAGAATGTAGTCTTGTCTTTCCCGATCGCCAGTCTATGCGCAATCATTTCCTTATGGAACACGGAAAGATGGAGGATAAACCCTTTGCTTGCTCTCTGTGCTCTAGCAAATTTGTTACAGTATATTTGTTACATCGACATACAGCAGTTGTTCATGGTGACCATAGCAAAACCTGCAGCAGTTGTCGGAAAAAATTTGAAACTGCCGCTCAATTATCGGCTCATGTTAAGGAACAATGCTTATGTGATACATGCGCGGAAGTTGTATGCGGCGCTGCTGCCCTTCAACATCACCTATTAAAACATAAGAAGAATTATGTTGAAATGGAAGAAGAAGAATGTTCATGA
- Protein Sequence
- MICRLCLKEVDKYIAGNILDVPYVIGKYFWFELQQNDPISAAICDNCWGKVSDFHEFYKSIEKVHGRLSENVIVKIESPGKEHAIESVMIQSFPLSSKKESDDYYTKVNDEVPFDMLIESTDDSIRNQRIEDSRDILGTESFDANDLEDADGAATCKDEKYCSNSDNPSNVEDIMKDGKDNKLTKKKKFTKSVRTTATKISLTRLRQNNTDGKIKSEKTQKRNLKKAKKSSEQSKADSDQSIAIDEEIAKFMSLHCDLCKFAATNFNSLHSHMHTEHKIKGYVRCCNKKFSKRFLLLDHVRQHSNPECFKCEQCNRVYADRNSMRIHFLSKHKKDEDKMFTCSQCPKKFFRRYSLRQHELVGHSDHKNACLAVDEEIAKFMSLHCELCKTEANNFTSLKGHMRAEHKIKGYVKCCNKKFRERGLLVEHIRVHFNPACYKCEECSLVFPDRQSMRNHFLMKHPKVEDKPFACSQCSNKFVTVYLLQRHKALAHSDQSTTCSSCCKRQVVREMFDSAAQLSAHIREQCLCDTCAEVVCGTVALQRHLLKHKKSFTEGKETEIPDISNKTSPSQQGKSIRKSCFLNSLSASECNTPSVHEKFPLQSTMICRLCLKEVNEFKSAFAVTENKPTMASVVRIHFWFELQQNDPISTVICNSCWCKVSDFHDFYKSVEEAQSHLGENVTVKIENISAEHSIENVMIPSFSLSSKQEPEVNFDEVNDEVPFDMTTVETPSTRTDLRTDDSHDIWRSQKNSDNNAIEDIKDIIDYKDEIFSDHNSDPVNRTTFAENEESNKVTINKKGINKTNKLSVKAQRKVPLAQKIHCKNGRAAKVPEVEKSNVKKTKELSEQAKAIREQGLAFDGEIAKFMSLHCELCKVTATNFSSLHTHMLAEHKINGYVRCCNKKFSKRFALLDHIRHHSNPERFKCEQCNRVYANRNSMRTHFLSKHKNDKEKVFTCSQCPQKFFKKYLLRKHELFGHSDHKNACIAVDEEIANFMPLRCELCNEESTNFTALKGHMRDEHNVKGYVRCCNKKFSEHGLLVEHIRAHLNPACYKCEECSLVFPDRQSMRNHFLMEHGKMEDKPFACSLCSSKFVTVYLLHRHTAVVHGDHSKTCSSCRKKFETAAQLSAHVKEQCLCDTCAEVVCGAAALQHHLLKHKKNYVEMEEEECS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -