Basic Information

Insect: Glossina palpalis
Gene Symbol: Pdf
Assembly: GCA_000818775.1
Location: Scaffold81:169053-176592[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.29 23 5.8 1.0 1 23 32 55 32 55 0.95

2 8 1.8e-06 0.00015 22.2 0.2 3 23 164 184 163 184 0.99

3 8 7.5e-05 0.0059 17.1 0.9 1 20 190 209 190 212 0.95

4 8 0.0059 0.47 11.2 4.8 3 23 232 252 231 252 0.98

5 8 4e-05 0.0032 18.0 0.0 1 20 258 277 258 278 0.95

6 8 3.9e-06 0.00031 21.2 0.8 1 23 287 310 287 310 0.93

7 8 6.6e-05 0.0052 17.3 0.8 1 23 317 339 317 339 0.97

8 8 8.8e-05 0.007 16.9 4.0 1 23 344 366 344 366 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.29	23	5.8	1.0	1	23	32	55	32	55	0.95
2	8	1.8e-06	0.00015	22.2	0.2	3	23	164	184	163	184	0.99
3	8	7.5e-05	0.0059	17.1	0.9	1	20	190	209	190	212	0.95
4	8	0.0059	0.47	11.2	4.8	3	23	232	252	231	252	0.98
5	8	4e-05	0.0032	18.0	0.0	1	20	258	277	258	278	0.95
6	8	3.9e-06	0.00031	21.2	0.8	1	23	287	310	287	310	0.93
7	8	6.6e-05	0.0052	17.3	0.8	1	23	317	339	317	339	0.97
8	8	8.8e-05	0.007	16.9	4.0	1	23	344	366	344	366	0.99

Sequence Information

Coding Sequence: ATGGCCGTGTGCGAGATGCTAGAGCTTTCGGTCTTGCAAAAATGCGGAGAGATTTTTTGCGATACTTTGACGTCTTCAAACGTGGATGTGAGTTTTCAGTGCACTTTTTGCCGGAAAACTTTAATGGAACTAAATACATTTTTGCTACATTTACAAATCGAACATTGCAAACCGCCGATAACTACagaagagtttcgtatagaaagtgtagaagaaataaaagaagaagaagacacggaagatggggaaattgaagatgcggaagaaTTTCTCTTCGAAACGGAAGAAGTGCTTTTTGAAGCGGCAGATATCCCCATTGTAGGAGAAGATGATGTCAGCCAATACGAGTTAGATAAAGATGAAGAAATACCTATTCCATTGGAGCATGTCTTGAAAAGCACCGAAATTGAAATGAAAAGTGGCTACAATTCCaaaaaaaGCGTACGTTCTACATCGCTGGCGGTGAAGCGTAAACGTCGGGAACACGGTTGTCCCTATTGCGATAGAATATTTAAGAGAGCCTGGGATTTAAAGGACCACTTAAACACGCACGATCGCCCAAAGCCATTTAGGTGCGATATTTGTCCAGCGTCATACTTTTACAAATCAAATCTTACAAATCATATGACATGCCATAAAATTTGTAAAAGTCGGAAGAATCGAAGCCCGCAAAAACCAAAAGAACGTAAATTATGCCGCTTTTGTCCAAAGACTTTTACTACGACGACCCATCGGCGCCGTCACGAACGCATTCATACTGGCGAGCGACCTTATATTTGCGAGATCTGCGGCAGAAGTTTTGCTTCATCTGCTGAATTAAGTAGTCACCGCAGTTGTCGGCATTTACATGAACGAAATTTTGTTTGCTATATATGCGACAAACGTTTTAACCGACGTAGTCAACTGAACATACATAAAGCAAATATCCACATTGCAAGGCCGGCCACTCATATATGTACAATCTGTAAAGCGGCTTTCAAAAGGATAACCGAATTAAAAACCCATATTAATGTTCATAAAGTGAAAGTTTACAAATGTACCGAGTGCAACAAATTGTTCGCTCACCATTCCGGTTTGTATGTGCATCAAAAAATCCATAAAAGACAAAGAGACGAATGGCTAACGGATTCATCGGTGATGTTTTCAAATAAAACAAATTTATTAAAAATTCCCATTAAACAACAAAATATCCGTCACATTTGCACTACGTTGACCAGATCAAAATCATTTCGACAATGGTATCGTGATTTATGGATACCAAATCACCCTTGCCAACCACCCTACTGGCATTTTACCCAAATTGGTGACCCCATATTAAGAACTAAAGCTAGTATTGTGCCAGAGGAGGCCATTAAGGAGCCAGAAATTGCCGACTTTGTAAACCAAATGATTAAAATGTTGCGTAAATATAATTGTGTGGGTATAGCTGCACCACAAATTGGGGTATCGCTGCGAATTATTGTCATGGAATGTAAAGAAAATTTGAAAGAAAAATTCTCCAAAGAAGTGTACTTGGCTAGAGAAATGTCAACCCTCCCCTTAACGGTTATGATTAATCCGACTTTAAAAGTTCTAGATTATGATAAACGTAAATTTTTGGAAAGTTGTATGAGTGTAAAAGGTTATTCTGCAGAGGTGGAACGCTATCGAAGCGTTTCTTTAACTGGTGTAGATGACAGAAATAACAAACAGGTATTAACATTGAAAGGCTGGAATGCGCGCATAGCCCAGCATGAAATGGATCATTTAGATGGTAAACTATATATCGATCATATGGATCCTTCAACATTTCATTGTACGTGCTGGGAGGTTGTTAATAGAAAAGCTGGTCGTGTTGAAATACCTTTCTATAAGTGA
Protein Sequence: MAVCEMLELSVLQKCGEIFCDTLTSSNVDVSFQCTFCRKTLMELNTFLLHLQIEHCKPPITTEEFRIESVEEIKEEEDTEDGEIEDAEEFLFETEEVLFEAADIPIVGEDDVSQYELDKDEEIPIPLEHVLKSTEIEMKSGYNSKKSVRSTSLAVKRKRREHGCPYCDRIFKRAWDLKDHLNTHDRPKPFRCDICPASYFYKSNLTNHMTCHKICKSRKNRSPQKPKERKLCRFCPKTFTTTTHRRRHERIHTGERPYICEICGRSFASSAELSSHRSCRHLHERNFVCYICDKRFNRRSQLNIHKANIHIARPATHICTICKAAFKRITELKTHINVHKVKVYKCTECNKLFAHHSGLYVHQKIHKRQRDEWLTDSSVMFSNKTNLLKIPIKQQNIRHICTTLTRSKSFRQWYRDLWIPNHPCQPPYWHFTQIGDPILRTKASIVPEEAIKEPEIADFVNQMIKMLRKYNCVGIAAPQIGVSLRIIVMECKENLKEKFSKEVYLAREMSTLPLTVMINPTLKVLDYDKRKFLESCMSVKGYSAEVERYRSVSLTGVDDRNNKQVLTLKGWNARIAQHEMDHLDGKLYIDHMDPSTFHCTCWEVVNRKAGRVEIPFYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00749958;
90% Identity: -
80% Identity: -