Gpap016900.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- -
- Assembly
- GCA_000818775.1
- Location
- Scaffold515:97520-109819[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.012 0.98 10.2 0.1 2 23 203 225 202 225 0.95 2 10 0.00082 0.065 13.9 1.8 2 23 285 307 284 307 0.96 3 10 0.0034 0.27 11.9 0.1 3 23 318 338 316 338 0.96 4 10 0.00019 0.015 15.9 1.2 1 23 347 369 347 369 0.95 5 10 2.6e-05 0.0021 18.6 1.3 2 21 379 398 378 401 0.93 6 10 2.2e-06 0.00017 22.0 1.8 1 23 420 442 420 442 0.98 7 10 0.0041 0.32 11.7 0.7 1 17 448 464 448 465 0.90 8 10 8e-05 0.0063 17.0 0.8 1 23 493 515 493 515 0.97 9 10 1.3e-05 0.001 19.5 4.3 1 23 521 543 521 543 0.98 10 10 4.9e-05 0.0038 17.7 3.3 1 23 549 572 549 572 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAATGGCAATTGTGGTGTCGTTTATGTGCTGACCGGAATTCGGAATGTTACACTAATGCTTTCCATTGCGGAGCTCTGAAGGCTGCCAATCCAAATATGATTTTAGTCCAATTCATTGAAAAATGTTTTTCGGTGAAAATAACTCCGGAAGATGATTTGCCCAAAGTAGTATGTTCCGAATGTCTACGCCTCATTAATAGCATTATCCACTTTAGTGAACGTGTTATTAAAGTACAGGAAATGTTCAATCATTTAATATATGACGCTAAACAGAGTCAACTTAATATTGATGTAAATGATGTCAAATTTGAGCCTGGAAAGTCTACTCTAACGGCTGGCGAGCAAAGCCCAACATATAGTAGAATATCTGAAGCATCTATACATATTAAAGATGAGCCCGAAGGAGAAGAGGACAAAAACATTGACGAGATTAGAGGGCTAGTGAGAGAAGAACATGTTTATGAACCCAATGCGGACCCAAAAGATAGCTCGTGCTGTGGTTCGGATCTGTTTAGTAGCATGGAAGAGGAAAAATTTAATCATCTTCGTAACCGAAGGGAAGACAAAAACGTAGTAATACAAGATGTTATAGCCAGTATAGAATGCAACGAATGTGCTAAAGAATTTGAGTCTTTTGATTCATATGACGAACATCTGAGGCTAATACATAGTAAAAGAAATTCGAAAGGTAAATGGCAATGTTACAAATGTGAAAAAATTGAAACGGAGATATCATTTTTTAAAACTCGTCTTACAGATCTGCATTTCGACGAGAAATCGCACAAAATAAAAAATAGAAGATCACGTGGGTTGCAAGCTAAAGCAGGAGACATTAGCTTAAATATGTCGTGCAATGATTGTGGACAGCAGTTCGAAACATTTCATGCGTATAAAGAGCATTTGAAATCCATGCACGGCAAAGGTAAAGCTCGTGAAAAATGGGATTGCCCCCTGTGCGACGTCATTGTGCAAAACAGTTACAGCTTTAGACGCCATCTCATGAGCCATATATCAGATAAAGAACAAAGAACCCATTCGTGTTCATTGTGCGATAAGAGTTTCGAAACATATTCCGGAATGCGTATTCATCTATCCGCTCATGAACCGCCGGGAGAACGAAATTTGATACCATGCCCACATTGTGACAAATACTTTTCATCAAATGAGTTGCTGCAAGCACATATCCAGTGCATGCACGTTAACTGGAGACGAAAACGAGTAACGACAAAAAAGTTTCAAGACGAAAAGCATTTTGTCTGTGAAGAATGCGGCTTGTGCTTGCGCAATAAAACCAATTTAAAAATTCATATGCAAAGACATAGTGATAATGCACCGTTCGAATGTGAAATATGCAAGAAGCGTTTTAAGAATTCTAGGCGGTTGAAGGTAATCAATCGTGTACGTGAAGTAGGATATTTTCAATTCATTGGTTTCTTCCAGATACATAGTGAAATTCATGATTCACAAAAACACGTTTGCAACGTTTGTGGTCAAGAATTAAATACCCGCAACACATTGAAACAACATATGCTAGTACATACTGGTAACAAACAACACAAATGTGATTATTGTGGTCAAGGTTTCCATAGTTCATCAACCTTGAAAAGACACTTAATATCCCACACCGGTCTTAAACCATACGCCTGCAATTTTTGTGATCGAACTTTCACAAATCGGACCAATTTTCGTGTACACAAAGAGAAAAAGCATCCTGGGGAATTGGCTGCTTTAGAAGCTGCTGGTGTGGGCAAACATATTGCCCAAAAATTACCAACCTTGGAAACCTTAAAGGCTCTTACCAAGGCAGCTAGTAATTTAAAGCCGGTCGCAAAGCCAAGAGACTGA
- Protein Sequence
- MSEWQLWCRLCADRNSECYTNAFHCGALKAANPNMILVQFIEKCFSVKITPEDDLPKVVCSECLRLINSIIHFSERVIKVQEMFNHLIYDAKQSQLNIDVNDVKFEPGKSTLTAGEQSPTYSRISEASIHIKDEPEGEEDKNIDEIRGLVREEHVYEPNADPKDSSCCGSDLFSSMEEEKFNHLRNRREDKNVVIQDVIASIECNECAKEFESFDSYDEHLRLIHSKRNSKGKWQCYKCEKIETEISFFKTRLTDLHFDEKSHKIKNRRSRGLQAKAGDISLNMSCNDCGQQFETFHAYKEHLKSMHGKGKAREKWDCPLCDVIVQNSYSFRRHLMSHISDKEQRTHSCSLCDKSFETYSGMRIHLSAHEPPGERNLIPCPHCDKYFSSNELLQAHIQCMHVNWRRKRVTTKKFQDEKHFVCEECGLCLRNKTNLKIHMQRHSDNAPFECEICKKRFKNSRRLKVINRVREVGYFQFIGFFQIHSEIHDSQKHVCNVCGQELNTRNTLKQHMLVHTGNKQHKCDYCGQGFHSSSTLKRHLISHTGLKPYACNFCDRTFTNRTNFRVHKEKKHPGELAALEAAGVGKHIAQKLPTLETLKALTKAASNLKPVAKPRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749877;
- 90% Identity
- -
- 80% Identity
- -