Basic Information

Insect: Glossina palpalis
Gene Symbol: grau
Assembly: GCA_000818775.1
Location: Scaffold404:86928-97439[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.69 55 4.7 2.4 6 23 260 277 260 277 0.98

2 18 2.3e-05 0.0018 18.7 2.2 1 23 283 306 283 306 0.94

3 18 0.00038 0.03 14.9 1.0 1 23 314 336 314 336 0.96

4 18 0.086 6.8 7.5 0.6 1 23 344 369 344 369 0.95

5 18 4.4 3.5e+02 2.1 4.6 2 23 375 396 375 396 0.96

6 18 0.62 49 4.8 0.1 2 23 405 428 404 428 0.84

7 18 0.00011 0.0085 16.6 3.4 1 23 435 458 435 458 0.95

8 18 5.3e-06 0.00042 20.8 0.4 1 23 463 485 463 485 0.97

9 18 0.00022 0.018 15.6 4.0 1 23 491 514 491 514 0.98

10 18 4.9 3.9e+02 2.0 0.6 6 23 789 806 789 806 0.96

11 18 3.3e-05 0.0026 18.3 2.5 1 22 812 833 812 835 0.90

12 18 0.02 1.6 9.5 0.5 1 20 843 862 843 865 0.93

13 18 1.1 90 4.0 0.5 1 23 873 898 873 898 0.90

14 18 0.0071 0.56 10.9 1.1 2 23 904 925 904 925 0.97

15 18 3.2 2.5e+02 2.6 0.4 2 23 934 957 933 957 0.83

16 18 3.4e-05 0.0027 18.2 2.8 1 23 964 987 964 987 0.97

17 18 1.2e-05 0.00093 19.7 0.4 1 23 992 1014 992 1014 0.97

18 18 0.00022 0.018 15.6 4.0 1 23 1020 1043 1020 1043 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.69	55	4.7	2.4	6	23	260	277	260	277	0.98
2	18	2.3e-05	0.0018	18.7	2.2	1	23	283	306	283	306	0.94
3	18	0.00038	0.03	14.9	1.0	1	23	314	336	314	336	0.96
4	18	0.086	6.8	7.5	0.6	1	23	344	369	344	369	0.95
5	18	4.4	3.5e+02	2.1	4.6	2	23	375	396	375	396	0.96
6	18	0.62	49	4.8	0.1	2	23	405	428	404	428	0.84
7	18	0.00011	0.0085	16.6	3.4	1	23	435	458	435	458	0.95
8	18	5.3e-06	0.00042	20.8	0.4	1	23	463	485	463	485	0.97
9	18	0.00022	0.018	15.6	4.0	1	23	491	514	491	514	0.98
10	18	4.9	3.9e+02	2.0	0.6	6	23	789	806	789	806	0.96
11	18	3.3e-05	0.0026	18.3	2.5	1	22	812	833	812	835	0.90
12	18	0.02	1.6	9.5	0.5	1	20	843	862	843	865	0.93
13	18	1.1	90	4.0	0.5	1	23	873	898	873	898	0.90
14	18	0.0071	0.56	10.9	1.1	2	23	904	925	904	925	0.97
15	18	3.2	2.5e+02	2.6	0.4	2	23	934	957	933	957	0.83
16	18	3.4e-05	0.0027	18.2	2.8	1	23	964	987	964	987	0.97
17	18	1.2e-05	0.00093	19.7	0.4	1	23	992	1014	992	1014	0.97
18	18	0.00022	0.018	15.6	4.0	1	23	1020	1043	1020	1043	0.98

Sequence Information

Coding Sequence: ATGCTGCAAACTACAGTTTGTTTTGAAAGAACCCATGATAATATGGACATATTTGGTGAAGGAAATAAACATTTGCAAATTGCGGAAACTATACAGAAACATCTAGGATTTAAGCCTCTTTTTGATGATACTATCTCGAAAGTCGTTTGTGTAAAATGTTGGCTTAAAATATTCGAATTTCATCAATTTTTCAAATCTGTGGAATACGCTCAGAATAATTATAATTTGCTGAAATTGCAAGACGGTAACGTTGACAACGTAAATGAGAAGGTACTTAATGTCAAAGTTGAATTGGACGATCAATTACAAGAACAAATCATGGAAGTTGATTTTGATAATACATCTGCATTAGTTCGAAAGAATGAACAAGAACCCAATAATCaaaaaaaTCCTTTAGATGAAATTGAAATTAATGAGACAGCTTATTTTAGTGATCCAGTAAAAGATGATGAATCGTTTTCCATTGAGGATGCGCTGGATGAAGCCCAAAATGCTTTTAGTTCATCTGACGAAGAGTTTCTAGCGGCTTTGAAAAAGAGAAACAAAATTACAAAGAGAAAGATAAAGCTGAAACCCGATCGGCAAGTTACAAAATCCAGTAAAGGGATTAAATCGACAAAGTGTGGAGTTAGACAGGATACTGCGCACATTGAAGCTCTTATaaaaaaaCACATACCAATGGTTTGCAGTTTGTGCATATTTGTTGGCCAGGTATTCTCTGATATAGTTCAACATTTTCGAAAATCTCATCCTAAACAAAAGCCGTTTGTCACCTGCTGTGAGCGCAAATTTAGCAAACGTTGCTATCTAACTCAGCATGCATTAAAACATGAAAATCCGGATCATTTTAAATGTCACGAATGCCAAAAAACCTTTTCTAATGATAGCGGTTTACGAGTTCATACTTTAGCTTATCATGCGCCTGAAGAGCAAAGGCTTTATGCGTGCGACGAATGCCAGCAAAGATTTGCAACAAAACACCTGTTGGAATTACATAAAGCTTCACATATCCCACGTGAAGAGAGATCGTATTTTTGCGATAAGTGTCCAACaaaaaaaGCCTTTGCTAGCGAATACTTGCTTCAAATTCATAACAACATGAGACATAAAAGAGAAGCCAATGTCTGCCACGTATGCGCAAAGTCGATACGTTGTAAGCGCTCATTCGAAAAACATGTACGTCTACATTTTGAGGATAGTGGGCCACGTGTTAAATGTCCATACCCGGACTGCGAAAGTTGGCTTAAAGATGAAGAAAATCTGAAGCAACATCTCAATCGTCACAATCCTGAGGGTAAAATTTATAAATGTCCCCAATGTGATAAAGTTTGCAAAAATCGCAGAGCCTTGACTAGTCATAAACTATATAGCCATTCAAATGAAATATTCCCCTGTGATCAATGCGGCAAAACATTTAAAAAAGCTATAACATTGAAGGAGCATATGGCCCAGCATACGGGAGAAACTCTATATAAATGCCCTTTTTGTACAAGAACATTCAATTCGAACGCCAACATGCACGCCCATAAAAAGAAAATGCATCCAGTTGAATGGGACGAGTGGCGCAAATCAAAACGCGGCAGTTCTCAATTATTTATTAACAATAACAATATAATTTATTTGGATAAATTGATTATAATATGTTTGGAAAAATCGCAAAACACAATGGCAATTTTTGCTGAGGGAAACAAGCATTTAAAAATTGCTGAAATTGTTACGAAGCATCTTTGGTTAAAGCCTCTTCCAGATGACACTATATCTACAGCAATATGTGAAGTCTGTTGGTTGAAAATATGTGATTTTCATAGATTTTTTGAATCTGTACAAAATGTCCAAAGCTGCTATCTCTTGCATTTAGAAAGTAACACAGCAAATGTTGAAGGAATGTTATTAAACATTAAAGTGGAAATAGACGATAAGCTGCAAGAACAGGTAATGGAAATAGAGAAACCTTGCCTTGAAACCAACATCGCAAATAGCATAGAGGAGCAAAAGAACCCTTTAGATGATTGCGAATTGAAATCAAAAGACGATCTAAGTGACGCTTCAAATGACTTAAATTTACTGAACGCTGGTGAAACTGATTCATCTTCCGATGGAGAATGTTTAGCAGTGCTAAAAGGCAGCAATAGATTATCAAGaaaaaaaGGAAGCCGAAAGTCTTTCAAACGAAACAAGAAGCCTTCGACAGAAACTAAACCAAAAACAACCAAACTTAAGACAGATCAAACACTTATAGAGAACTTGATAAACAAGCATATTCCCATGGCATGCAGTTTGTGCGTTTTTATGGGACAAAAATTTTCCGATATTGTACAACATTTTCGAAGTATTCATCCTAAACAGAAACCTTTTGTTATGTGTTGTGAACGTAAATTGTCTAAGCGTTACTATTTAAGTCAGCACGCTTTGAAGCATGAGAATCCAGAACACTTCAAATGTCACGAGTGCCAAAAAACCTTTTCCAGTAACAGAGGTTTACGAGCCCATAATTTAGCTTACCATGCATCAGAGGAGCAAAAGCTTTACGCTTGCGCAATATGCCCGCAAAGATTCGCTACAAAACATTTACTAGATTTACATCACCCGGCGCATATATCGCGAGAGGAAAGAAGttttttttGTACCAAATGTCCAACAAAGAGGGCTTTTGCTAGCGAATACCTTTTAGCGATACATAATAGCATGAGGCATAATAGAGAAACAAATGTTTGTCATGTCTGCGCAAAGGCAATACGCGATAAACGATCTTTTGAAAAGCATGTACGTTTGCATTTCGAAGACAGCGGGCCTCGTGTTAAGTGCCCCTATCCGGATTGCGAGAGTTGGCTTAAAGACGAAGAAAATTTGAAACTGCACCTTAAACATCATAACCCAGAGGGAATAATATACAAATGCACGGAATGTGGCAAATCATGTAAGAGTCGCGTAGCTTTGGCTAGTCACAAAAGGTACAGTCATTCAAATGAAACATTTCCTTGCGAGCAATGTGGGAAAACTTTCAAAAAAGCGTTAACCCTGAAGGAACATATGGCTCAGCACACGGGTGAAACATTATATAAATGTCCCTTCTGCACAAGAACATTCAATTCGAACGCTAACATGCACGCGCATAAAAAGAAAATGCATCCAAAAGAATGGGATGAATGGCGAAAATCGAAACGAGGCAGCTCTCAATTATTGATCAGCCATAGCAGTAGTATATTTTAA
Protein Sequence: MLQTTVCFERTHDNMDIFGEGNKHLQIAETIQKHLGFKPLFDDTISKVVCVKCWLKIFEFHQFFKSVEYAQNNYNLLKLQDGNVDNVNEKVLNVKVELDDQLQEQIMEVDFDNTSALVRKNEQEPNNQKNPLDEIEINETAYFSDPVKDDESFSIEDALDEAQNAFSSSDEEFLAALKKRNKITKRKIKLKPDRQVTKSSKGIKSTKCGVRQDTAHIEALIKKHIPMVCSLCIFVGQVFSDIVQHFRKSHPKQKPFVTCCERKFSKRCYLTQHALKHENPDHFKCHECQKTFSNDSGLRVHTLAYHAPEEQRLYACDECQQRFATKHLLELHKASHIPREERSYFCDKCPTKKAFASEYLLQIHNNMRHKREANVCHVCAKSIRCKRSFEKHVRLHFEDSGPRVKCPYPDCESWLKDEENLKQHLNRHNPEGKIYKCPQCDKVCKNRRALTSHKLYSHSNEIFPCDQCGKTFKKAITLKEHMAQHTGETLYKCPFCTRTFNSNANMHAHKKKMHPVEWDEWRKSKRGSSQLFINNNNIIYLDKLIIICLEKSQNTMAIFAEGNKHLKIAEIVTKHLWLKPLPDDTISTAICEVCWLKICDFHRFFESVQNVQSCYLLHLESNTANVEGMLLNIKVEIDDKLQEQVMEIEKPCLETNIANSIEEQKNPLDDCELKSKDDLSDASNDLNLLNAGETDSSSDGECLAVLKGSNRLSRKKGSRKSFKRNKKPSTETKPKTTKLKTDQTLIENLINKHIPMACSLCVFMGQKFSDIVQHFRSIHPKQKPFVMCCERKLSKRYYLSQHALKHENPEHFKCHECQKTFSSNRGLRAHNLAYHASEEQKLYACAICPQRFATKHLLDLHHPAHISREERSFFCTKCPTKRAFASEYLLAIHNSMRHNRETNVCHVCAKAIRDKRSFEKHVRLHFEDSGPRVKCPYPDCESWLKDEENLKLHLKHHNPEGIIYKCTECGKSCKSRVALASHKRYSHSNETFPCEQCGKTFKKALTLKEHMAQHTGETLYKCPFCTRTFNSNANMHAHKKKMHPKEWDEWRKSKRGSSQLLISHSSSIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -