Basic Information

Insect: Glossina palpalis
Gene Symbol: -
Assembly: GCA_000818775.1
Location: Scaffold515:90680-94983[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0059 0.47 11.2 1.0 2 23 272 294 271 294 0.96

2 16 0.21 17 6.3 0.0 2 23 304 325 303 325 0.94

3 16 0.03 2.4 8.9 0.5 2 23 348 370 347 370 0.93

4 16 0.01 0.81 10.4 0.3 2 23 380 401 379 401 0.97

5 16 2.6e-05 0.0021 18.6 2.9 1 23 410 432 410 432 0.97

6 16 2.5e-05 0.002 18.6 0.6 2 23 442 464 441 464 0.95

7 16 0.0058 0.46 11.2 0.1 1 23 525 547 525 547 0.98

8 16 0.036 2.8 8.7 0.1 1 17 552 568 552 569 0.89

9 16 0.011 0.85 10.3 1.9 2 23 764 786 763 786 0.95

10 16 0.0026 0.2 12.3 0.0 3 23 797 817 795 817 0.96

11 16 1.1e-05 0.00084 19.8 0.9 2 23 827 849 826 849 0.95

12 16 0.00068 0.054 14.1 0.9 1 23 854 876 854 876 0.98

13 16 5.2e-05 0.0041 17.6 1.1 2 23 883 904 882 904 0.97

14 16 0.0052 0.41 11.3 0.4 1 23 909 931 909 931 0.96

15 16 0.0026 0.21 12.3 1.8 1 23 937 959 937 959 0.97

16 16 0.038 3 8.6 2.9 1 23 965 988 965 988 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0059	0.47	11.2	1.0	2	23	272	294	271	294	0.96
2	16	0.21	17	6.3	0.0	2	23	304	325	303	325	0.94
3	16	0.03	2.4	8.9	0.5	2	23	348	370	347	370	0.93
4	16	0.01	0.81	10.4	0.3	2	23	380	401	379	401	0.97
5	16	2.6e-05	0.0021	18.6	2.9	1	23	410	432	410	432	0.97
6	16	2.5e-05	0.002	18.6	0.6	2	23	442	464	441	464	0.95
7	16	0.0058	0.46	11.2	0.1	1	23	525	547	525	547	0.98
8	16	0.036	2.8	8.7	0.1	1	17	552	568	552	569	0.89
9	16	0.011	0.85	10.3	1.9	2	23	764	786	763	786	0.95
10	16	0.0026	0.2	12.3	0.0	3	23	797	817	795	817	0.96
11	16	1.1e-05	0.00084	19.8	0.9	2	23	827	849	826	849	0.95
12	16	0.00068	0.054	14.1	0.9	1	23	854	876	854	876	0.98
13	16	5.2e-05	0.0041	17.6	1.1	2	23	883	904	882	904	0.97
14	16	0.0052	0.41	11.3	0.4	1	23	909	931	909	931	0.96
15	16	0.0026	0.21	12.3	1.8	1	23	937	959	937	959	0.97
16	16	0.038	3	8.6	2.9	1	23	965	988	965	988	0.95

Sequence Information

Coding Sequence: ATGACATTAAACGAGGCTATCCACAAATACTTTAGCGTAAACATAAAACCGGAAGATCGTTTACCAAAAGTGTTATGTTGTTATTGCTTCAATTTAATTAGCGCCCTAATCGACTTCAATGAACGCATATTCAAAGTGCAGAAATTATTTTCAACTTTTAATTCGAATTTTAGTCAACCGTTCAGATTACATTTAATACCAGAACGCGAAATTCACGATTTCTGGAAATTGAAATCTATTAATACAGGAATGAAGGAAAATATTGGCAAACGTAAGCTTTCAGTGAAATTTAAAGATGAAATTACCGAAGAAAGTAAATCACAAGTGACTAAAAATCTTCGAGAAAAGATACAGAACAAAGAAGGAAAGATAAAAGAATTTAATAATTCCTTTAGTAACATACAAAAATTTTCTGAGAATGATAAGGATGCTTCTCAAAATAGGAGAAAGGAGaaaaaaaCTACAGTCAAAAGTAATGAGATTTTCCTtaaaaagaactcgccaaataaaaaatccgttttaatacaagaatttaaaaataaaatggaaatGGAAGAACTTATTGATACCATAGGAAATGTGTTTAATGAAAAGGTTGGAAATAAGGACGAGCCACGTCCTAAGCAAGAAAACAATAAAACGAATAGAAATGAGATAAAGCAATTTGGAGAAAAAGGATCGAATGAAACGAAAGAGTCAATTAATACTGTGACAGTAAATATGGCAAAAGATAATAATAATGACCTCCTTCAGGGAAAAAGTAAAACATTACGTAAGTCTTCCACAAGGGTAAAAGACTTTGAATTAGATATCACTTGTAAAAAGTGTGGCGAACAATATAAATCGTTTTTTCCATATCGGCAGCATTTAAGATCGGCACATTCGGAGGCATGGTGTGGTGGCAAATGGACATGTCCTGATTGCGATGCAACTGTACTGTCGAGTGCTGGCTTAGCGCGACATGTTTTGTTGCATAACAATTCCCATCACGAAAACATTTATAAATCTTCCCCGAGTTTAGGGGACATTAAAATGAAAATACCGTGCAAAAAATGCGACATACAGTTCAAATCtttttttCCATACCGTCAACATTTAAAAGCTGCGCACAACTTGGGAAAAATTCATGACGAATGGACGTGTCCCTTCTGTGGAAGAATAGTATTTTACATTTCAACTTTTCGATCTCATCTTTTGACTCACATACCAGGAGGAGCTAACAAGTCCCACACATGTTCAGTGTGCACGAAAAGTTTTCGTACGAAAAATGGACTACGAGAGCATCTTTTAAGCCATACGCCAATGGAAAAAAGCCATGAGTTGCCATGTCCAGAATGTGATAAGGACTTTTCCTCAAGGACATGCCTAAATGATCACATAAATAATGCACATAAAATAGATGATCAACGTTTACAGGGAGGAAGTGGCGTGCCCTTCACTACAAACAGTTTTTCAAAAAATGACATGTTTATCTACGACGAAAGCGCGCCATTTGAAAGCGGATTATGCaaaaaaaaaTTGAGAAACGCTGGCCAACATAAGGCACATGAAGAAACGGGCGATTCCCAAAAATTTACTTGTACTCTTTGTGGACTACGATTAAGTGCACTTAACCTTCTAAATCGTCATTTAGCAATGCATAATGACATGAAATACCAATGCGATCACTGTGAGCGCAGTTTCGGATACATAAGTGCGTTGAAGATAACGGACGAGGATAACTTGCCAAAAACGATGTGTAAAAAGTGTTTCAACTTAATCACAGCCCTAATTAGTTATAGTGAACGCATATCCAAAGCTCAAAAAATGTTTAATAACTTACTTTTAAAAGAGGAGGAGGAGTACTGTGATCTTCAATCCGTACGTTTAAAATTCGGTTTGATGGATGACGAAGTACTATCTCAATTTCCATTAGCCGAAGTTCACTACTTTGAAACAAAGCTTGAAACGACTGAAATTGAGGACAATTCAATTAAAGAGGATGTTTCAGAAATTTCTTCATCACCTATTATAAAAGGCGAACTCAGGAAAGCGAACAATATTGAAATGGATGTGGAAGTGGAAGTATGTCGCGAAGAACCATTATACGACGAAGAAAATGAATGTGAAAGTGCTGATGACGAAGAAGACCCTTTTAGCAGCGTTGGTGAAGACAAGGAATATACTTTagaagaaaatattttgaatgggaaaaagagaaaaaagttgagaagaaaagctaaacatagaaagGATAAGGGCAAGGAACAAGATATCGAAAACATTTTGGAAGATATTAAATTAGACATTACTTGCAAACATTGCGATGAACAGTTTACGTCATTTCAACCTTATCGCCAGCATTTAATAATGCAGCACGATCAATGCACAACTCCAAAAGAATGGATATGTCCGGCATGTGATAAAATACTTACGTCGAGCATTCGCTTAGAGCGTCATCTTAGAGTTCATATACCGCGAGAGGAGCCTGAGGTATTGCCTTGTCCTGAATGCGGCAAGCATTTTCCTACAAATACTCGTCTAAAAGCTCACATTAAATATAAACACAAACCTGAACGTTTTATGTGCGAAGAATGTGGAGCCTGCATAACCACGAAAGCTAACTTGCAATTTCACATGTTAACGCACACGGATAATGCTCCACTAGAATGTGAAGTTTGTAAAAAGAAATTCAAATATGCAAGACGCCTTAAGATTCACATGGAGACACATGATTCGCAGAAGCACATCTGCAACATATGCGGTCTTCAGTTAAACACACGTATAACGCTAAGAGGACATATGTCAGTGCATAACGATATTATGAAATACAAATGTGAATTTTGTGGTCGCGCTTTTAAGCTATCCAAAACGCTAAAATTCCATTTAATATCACACACTGGCCTCAAGCCATATACCTGCGATTTTTGTGATCGCGCCTTTACGAACGGAGCAAATTGTCGATTGCACaaaaaaaaaGTTCATCCGGAAGAATGGGCCGCTTTAGAAGCGGCAGGACGTACTAAAAATGTCGCACGCACCTTGCCCAATATAGAAACTTTAAAGGCACTTACAAGAGCTGCAGGAAATTTAACGTCAATAGTTAACAAGCAAGGAAACGGTGGTAAAAAGTTTCATAATCAAGATGACATCGTCTTGGCGAACACTTTGAAAATAAGCGAAAGTAAATAA
Protein Sequence: MTLNEAIHKYFSVNIKPEDRLPKVLCCYCFNLISALIDFNERIFKVQKLFSTFNSNFSQPFRLHLIPEREIHDFWKLKSINTGMKENIGKRKLSVKFKDEITEESKSQVTKNLREKIQNKEGKIKEFNNSFSNIQKFSENDKDASQNRRKEKKTTVKSNEIFLKKNSPNKKSVLIQEFKNKMEMEELIDTIGNVFNEKVGNKDEPRPKQENNKTNRNEIKQFGEKGSNETKESINTVTVNMAKDNNNDLLQGKSKTLRKSSTRVKDFELDITCKKCGEQYKSFFPYRQHLRSAHSEAWCGGKWTCPDCDATVLSSAGLARHVLLHNNSHHENIYKSSPSLGDIKMKIPCKKCDIQFKSFFPYRQHLKAAHNLGKIHDEWTCPFCGRIVFYISTFRSHLLTHIPGGANKSHTCSVCTKSFRTKNGLREHLLSHTPMEKSHELPCPECDKDFSSRTCLNDHINNAHKIDDQRLQGGSGVPFTTNSFSKNDMFIYDESAPFESGLCKKKLRNAGQHKAHEETGDSQKFTCTLCGLRLSALNLLNRHLAMHNDMKYQCDHCERSFGYISALKITDEDNLPKTMCKKCFNLITALISYSERISKAQKMFNNLLLKEEEEYCDLQSVRLKFGLMDDEVLSQFPLAEVHYFETKLETTEIEDNSIKEDVSEISSSPIIKGELRKANNIEMDVEVEVCREEPLYDEENECESADDEEDPFSSVGEDKEYTLEENILNGKKRKKLRRKAKHRKDKGKEQDIENILEDIKLDITCKHCDEQFTSFQPYRQHLIMQHDQCTTPKEWICPACDKILTSSIRLERHLRVHIPREEPEVLPCPECGKHFPTNTRLKAHIKYKHKPERFMCEECGACITTKANLQFHMLTHTDNAPLECEVCKKKFKYARRLKIHMETHDSQKHICNICGLQLNTRITLRGHMSVHNDIMKYKCEFCGRAFKLSKTLKFHLISHTGLKPYTCDFCDRAFTNGANCRLHKKKVHPEEWAALEAAGRTKNVARTLPNIETLKALTRAAGNLTSIVNKQGNGGKKFHNQDDIVLANTLKISESK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -