Gpap012310.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_000818775.1
- Location
- Scaffold293:272704-278063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00058 0.046 14.3 1.8 1 20 170 189 170 191 0.94 2 12 5.4e-06 0.00043 20.7 0.4 3 23 242 263 240 263 0.93 3 12 1.1 91 4.0 0.2 1 23 269 291 269 291 0.90 4 12 3.2e-06 0.00025 21.4 3.4 1 21 298 318 298 319 0.95 5 12 1.2e-06 9.2e-05 22.8 0.8 2 23 331 352 330 352 0.97 6 12 2.9e-05 0.0023 18.4 3.0 1 23 363 385 363 385 0.98 7 12 5.4e-05 0.0043 17.6 0.8 1 23 391 413 391 413 0.97 8 12 1.2e-05 0.00092 19.7 1.0 1 23 419 441 419 441 0.99 9 12 3.1e-06 0.00024 21.5 0.4 1 23 447 469 447 469 0.98 10 12 1.1e-05 0.00083 19.8 2.3 1 23 473 495 473 495 0.97 11 12 0.00021 0.016 15.8 3.1 1 23 509 533 509 533 0.92 12 12 0.25 19 6.1 0.3 3 23 548 569 546 569 0.93
Sequence Information
- Coding Sequence
- ATGTGCGAGAAgaaatacagaaaaaatatggaaaaaattccatcagAAATCTTATCCCTTAAATTCAATTCGCATTTCCCGATGAGTATTAAAGAAGAGAAGAAAGCTTCGCCTTCTTCCAATATGGCAGTAGGTGTTAAAATTCTCAATGATAAGAAGAAGAAAGTACCGTCACTTCAGTTGCCCTTTATGACATCCGTTCCGTCAGTACCGTTATCGCCGCCTAAGCAGATCACTTTGTCAATTGCGAAGCCGAAGAAACCTGTGAGCAAGGAAAAGAAAATGGATCATTATTTAATGCAAACGATAAAAGGTGaaaaaaaTGCCGAAGGTGTTGAAGGTCCGGAAACTATCGATTTTATTTTAACTGATAACAATGAAGATGACGACGGTAGCGGAGGGATTACTAAACCAAGTGGTGAGATTACTGAAGAATTACGCTTAACTGATGAGGAAGAACACGATGGAGTGCAAGGAGGAAATGAAAAAACTGAAGAAATTGTGGAACATGTGTGTGGCAAATGTTTCAAGACATTCAGACGTTTAAGGGGTTTAAAAAAGCATTTGGATTATTGTCGCTTTGATAGCGGTTATCATTTGCGCAAAGCCGAAATGCTTAAGAATCTGGAGAAAATAGAAAAAGATGCCGTTATTATGGAGAATAAAGACGTTTGCTTTTGCTGCGGCGAAAGCTATGATACTTATCATTTGGGTCATATAAACTGTCCAGACTGCCCCAAATCCTTTAAAACGCAAATGAGCTACGAACGCCACATCTTCATTACTCATTCCGAATTGAATGATCACCCCTGTTCGATTTGCAACGCGAAATTGCGCAGTGGGAACTTGTTGATATTGCATGAGGAACAGCATAAAAATCGTGGCAAACCGTATGCTTGTAAAATTTGTGGTAAAGATTTTACACGTTCCTATCATTTGCATCGTCACCAGAAGTATTCATCTTGCTCGGCTAATGAGAATGACTCGATGAAGTGTAAAGTGTGCGATAAAGCCTTTTATCGTTTAGATAATTTACGAGCTCATCTCAAACAACATTTAGGTACGCATGTCACAAAAAAGCCCGAATACATGTGTCCCATTTGCAAGAATTGTTTCTATAGTTTATCTACACTAAACATTCATACTCGCACTCATACGGGAGAGCGTCCGTTCGATTGTGATTTGTGTGAGAAAAAGTTCCCATCTTTAGTGGCCCTTAAAAAGCATCGTCGTTATCATACCGGCGAAAAACCTTATACATGCTCTGTGTGCAAGCAATCGTTTGCCGTTAAGGAAGTGCTAAACCGCCATATGAAACGTCATACCGGTGAAAGGCCATATGTATGCAATGAATGTGGAAAAAGTTTCATACAAGGAGTGCAACTACGTAATCACAGTAAAACTCATTTACGTCCTTACGAATGCAACAAATGCCCCGAGAAGTTTAAAACCGAAAAACAATTACAACGTCATTTTAGGGATCATCAAGTTTTAAGTAAGCGCCGTGGGCGATCAAAATACCCTCATAGATGTGAGACTTGCAAAGTATCGTTTAAAACTGAAAGTGAATATACTCAGCATATGAAAAAAGGATCGCATTTAACTCCTGCTCAGAAACGAAAAATTAAAAATCGTACGGATTGCGCGGTTTGTaaaaaaaaTTTTGACTCTGTACAGAGTTTACAATTTCATATACTCAAAGTGCATCAGGAAGATCCGGAAAATTTTGTTAATGAAGATCCTTTTCAACGGCCAACCGTTAGTAATGAATCAAAGCAATGGGAGAGAGAAAATGATGAAGTTCCGCCACCAGCACCGAAAATTATAAAAATCGAAAGTAATGATGATATACCACATACTGAGATTATTCGAATCGTGGATACTAGTATACCAAATCTTGTAAGCAGCAATCTTAAGACATTTAATGATAAACAACCCATAATAAAAGCGGATGAAGGAACAATTGCTTCGTCCGATAAAGTCCAAATTTTGCAAGAATTTGTAATTCATGACCAGCCAACCACATCGTCGGTTGTCTCCGCCAATACTGGACAAACCATTATACTATCGAACGAAGCATTTACGGTTATACCTTTGGAATCAGATGGTGGTATTATTGAGCCTATAACCACTCACACTTTGCCAAATAGTGTAATTGTACCGGCATCCACTAAAAAATCTCAGAAAAAATCGTTGGCAGAAAGTTTAGCTGCTGCCATTGCTGATAATGATGAATTAACAACGTTTGCTGAAGAGGATGAAGAGCTAAGCGAAGATGACTATAAACTCAAAGATAATGTTTATAAACTACTCGATATGTTAGTGGATAATGTTACATTaaaaaaaTTCGGTTGGCCTGAAACTACAGAGGAGAAAGTCCTATGCAAGGTCATTGAAAATTGTGGTCACGATTTATCAAAAGATCCTTACAATTATCAGGAGTGGGATTACGGTACCCGGATGCGCGAATATGTCAAGTTATTGTTTACCGTGGTTATACATAACGACTCAATCAAACAACTTTTAAATAACTATCCCATTGATGAGGTAATTGAATACGTTTTAggcaacgatgacgatgacgaggacgacgacgatgatgatgatgagaacgatgataataccaatgagaacaaagaggagaaaaaaaCAGACAAATCTGCTAATAGTTCgaaacaaattaacaaaacggataataataaaaccgtaaaaagcgaaaaagaaaaattgaaaaactaa
- Protein Sequence
- MCEKKYRKNMEKIPSEILSLKFNSHFPMSIKEEKKASPSSNMAVGVKILNDKKKKVPSLQLPFMTSVPSVPLSPPKQITLSIAKPKKPVSKEKKMDHYLMQTIKGEKNAEGVEGPETIDFILTDNNEDDDGSGGITKPSGEITEELRLTDEEEHDGVQGGNEKTEEIVEHVCGKCFKTFRRLRGLKKHLDYCRFDSGYHLRKAEMLKNLEKIEKDAVIMENKDVCFCCGESYDTYHLGHINCPDCPKSFKTQMSYERHIFITHSELNDHPCSICNAKLRSGNLLILHEEQHKNRGKPYACKICGKDFTRSYHLHRHQKYSSCSANENDSMKCKVCDKAFYRLDNLRAHLKQHLGTHVTKKPEYMCPICKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPYVCNECGKSFIQGVQLRNHSKTHLRPYECNKCPEKFKTEKQLQRHFRDHQVLSKRRGRSKYPHRCETCKVSFKTESEYTQHMKKGSHLTPAQKRKIKNRTDCAVCKKNFDSVQSLQFHILKVHQEDPENFVNEDPFQRPTVSNESKQWERENDEVPPPAPKIIKIESNDDIPHTEIIRIVDTSIPNLVSSNLKTFNDKQPIIKADEGTIASSDKVQILQEFVIHDQPTTSSVVSANTGQTIILSNEAFTVIPLESDGGIIEPITTHTLPNSVIVPASTKKSQKKSLAESLAAAIADNDELTTFAEEDEELSEDDYKLKDNVYKLLDMLVDNVTLKKFGWPETTEEKVLCKVIENCGHDLSKDPYNYQEWDYGTRMREYVKLLFTVVIHNDSIKQLLNNYPIDEVIEYVLGNDDDDEDDDDDDDENDDNTNENKEEKKTDKSANSSKQINKTDNNKTVKSEKEKLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746884;
- 90% Identity
- iTF_00746884;
- 80% Identity
- -