Gpap017588.1
Basic Information
- Insect
- Glossina palpalis
- Gene Symbol
- bab2
- Assembly
- GCA_000818775.1
- Location
- Scaffold234:246677-248497[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-07 0.00042 20.1 0.0 5 37 374 407 370 413 0.84 2 4 3.2e-13 7.1e-10 38.6 0.0 1 44 429 472 429 473 0.95 3 4 0.013 28 4.6 0.0 27 37 502 512 501 517 0.90 4 4 5e-17 1.1e-13 50.8 0.1 4 41 541 578 541 580 0.92
Sequence Information
- Coding Sequence
- ATGAACCATCTTAAATGGATGGGCCACTCGGCCACCATATTGGATATACAAAAGAATCTGCGCAGCGATTTGGAAAGTTGTGAAGTAACATTAGTTGCCAAGGGTCATTCGGTGAAAGCTCACCGCTTTGTACTATCATCCTGCAGCGATTTAATGCGTTCTTTGTTAACGGATATACCCTTGGGCCAAGAGTGCACAGTGATGGTGCCAGACATTGAAGGCGTTTTGTTAGATAGTGTCTTAGCGTTCATTTACTTGGGCGAAGCATGCATATCTGCTGGTAATTTATCTGTATTTTTGGAAGCAATTAATATTTTAGGCATCAAATCGGCGATTAGCTTCGAATGCCACTCAAATTCTTCACAAAATGCCAGCACTGACACTGTGTCATCCAGTTCCCCGTCTCCCGTGGTGACGCGAGTTTTAGGCAGTAGCCTGAATTTAAGTCATGAAGAAATGATCACCCACGACAGCATAACGCAAAAATTGGAACCGTCAAATGTTATTCCGGCCGAATCGCCATCGACAGCGACCAACACATCTAACAGAGATTTGGAATTTTTAGACGTCTACCATGATCCCCAAAATAAAATTACTTATTCCATAGAACATGTGTCAGGCGTTGCGGGTGGCAATGAATTTATATTAACCGAAAATTCAGGCACTTATACATTGACACAAAATCCAAAATTAGAAACCGCTTCAAGTACAGCTTCCGCAAATATGGACACCAATGAGGATGAAGGTGTCGAAATTCATATTAGCGAAGAGTACAGTAGTAATGATGAGAACCTTATGCAATTAGATGACTCAGCACCTGAAGTTACGGTTACAAATGCAAATTCTTCAGCTGCTCACAGCGGTAATACTATTAATAACGTAGTTGAGGTAAAGCCaaaaataaaaacaataaaattaaaaGCCCGACCTGGCACAGCCAACGCTGTTAAGCTGGACACTCCAATGGATACGGCGAATGTCTCGGAAGATCCTATCTCTATAATAGAAGCACATGATGAAAACTTTACTATTCTTAAAGAGAATGGAAACAATGAAAATGCAGGAGACAATGAGTCAGGTGCAACCGATTTAGTAAATTGTAGCTCATCGCAGACGCCGATTGACTTAGCTTATCAAGCCATGATAAACGAAGGGATAAGCTTGCCTAAAGCGGCTTCCAAATTTAATGTATCCAAAACAGAGTTGTGGTGTCGAGTACGCAGCACAGGTGTCGAAAACTATATGTCATCGACGTCAGAGTCTAATTCAGTTCGCCCAATaaaaaaaGAAGATGCTATCGAAATGGCATGCAAAGTTGTCATTTCTGACGGTTTGAGTTTGCAGAAAGCAGCGATGAAATTTGACATATCGAAAACGGTTCTTTGGCGCCGTGTACGTAAGCATCCTGATTATATGAAAACTGCCCGCGAAAATCCCATAGTTACTAAAGCCTATGAACGCTTAAAAAGTGGTGAATCTTTGAAAAGCATCAGCCTAGATTTGGATATACCTATGTCGACTTTACATCGTCATAAGGTGCGACTATCGCAACAGGGTCAATTGCCCGATTTTGTTACATGCAAAAGACGCGATTCCACCTCAAAGGATGATCTCAAGCTTAAATTGGCCAAGGCGGTGCAAGCTTGCGTGCAAAATGGCATGTCCCAAAATCATGCTGCCAACGTGTACGGGATATCTAAGAGCACATTATGGCGCCACCTTCAAAAACGTGTCGCAGAAGCTGAAGCATCTGAAGCTGCTGAACACTCTACCGGATCTATGGAAGAAGACGAAATCAAAGAAGAAGTTATACTTTCATAA
- Protein Sequence
- MNHLKWMGHSATILDIQKNLRSDLESCEVTLVAKGHSVKAHRFVLSSCSDLMRSLLTDIPLGQECTVMVPDIEGVLLDSVLAFIYLGEACISAGNLSVFLEAINILGIKSAISFECHSNSSQNASTDTVSSSSPSPVVTRVLGSSLNLSHEEMITHDSITQKLEPSNVIPAESPSTATNTSNRDLEFLDVYHDPQNKITYSIEHVSGVAGGNEFILTENSGTYTLTQNPKLETASSTASANMDTNEDEGVEIHISEEYSSNDENLMQLDDSAPEVTVTNANSSAAHSGNTINNVVEVKPKIKTIKLKARPGTANAVKLDTPMDTANVSEDPISIIEAHDENFTILKENGNNENAGDNESGATDLVNCSSSQTPIDLAYQAMINEGISLPKAASKFNVSKTELWCRVRSTGVENYMSSTSESNSVRPIKKEDAIEMACKVVISDGLSLQKAAMKFDISKTVLWRRVRKHPDYMKTARENPIVTKAYERLKSGESLKSISLDLDIPMSTLHRHKVRLSQQGQLPDFVTCKRRDSTSKDDLKLKLAKAVQACVQNGMSQNHAANVYGISKSTLWRHLQKRVAEAEASEAAEHSTGSMEEDEIKEEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746630;
- 90% Identity
- iTF_00746630;
- 80% Identity
- iTF_00750605;