Gpal011890.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- grau
- Assembly
- GCA_000688715.1
- Location
- Scaffold352:97844-104772[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8 2.1e+02 2.7 1.8 2 23 251 273 250 273 0.92 2 10 0.0045 0.35 11.5 1.3 6 23 282 299 282 299 0.99 3 10 0.00057 0.044 14.3 1.2 2 23 306 328 305 328 0.94 4 10 0.00064 0.049 14.2 0.7 1 23 336 359 336 359 0.95 5 10 0.0032 0.25 12.0 0.6 2 23 380 402 379 402 0.94 6 10 0.034 2.6 8.7 0.1 6 23 411 428 411 428 0.98 7 10 0.00028 0.022 15.3 0.5 1 23 434 457 434 457 0.96 8 10 0.049 3.7 8.3 0.3 1 23 465 488 465 488 0.91 9 10 0.0011 0.086 13.4 0.3 2 21 494 513 494 514 0.95 10 10 8.6 6.6e+02 1.2 0.6 3 23 518 538 516 538 0.87
Sequence Information
- Coding Sequence
- ATGATTTGCCGATTATGTTTACAAGAAATTTGTGATTTTAAAAGTGCGTTCGACTCGGCAGACAATGAACGGACTATCGCGTCAATAATTGAAAAATATTTCTGGTTTGAGTTCCAGCAAAACGATCCAGTATCAACAGTGATTTGTAACAATTGTTGGTGTAAAGTTTCTGACTTTCATGAATTCTATAAAAGTGTTGAGGAAGCTCAAAGCCGCCTGGGCGAAAATGTCGTAGTGAAAATTGAAAATATTAGTGTGGAGCATTCCATAGAAAACGTAATAGTTCAGTCGATCCCTTTTTCTAGCAAGCAAGAGCCCACCGATTTTGCAGAAGCCACTGATGAGGATCCTTTTGATATGCCAATAGTAGATAATAATCCGTCATTACTCCTAAAAGGAAAAGATAATTCCAATGATAAATTAAGGACACAAACTTATAGTATTAATTCTATGGAAACGGTTGAGAATGCTGGTGATGGCAAAGACGAAAAATCTAGTGACCATAACGGCAAAAAGGCAGCGGTTAAGAAGTCTTTGAAAAAGAAAAAGCCTGTAAAATCTTCCACAACGGGTAGAACTAAAAATCCTACGCCTAAATTACAACGGAATGTAAACTTATGCTTAAcaaaaaatacaagaaaattgggcaaaactgaaaacaataattcaaaaaaaggaaatgtgaaaaaaCCGATTGAAGATCCCAAAAGTGTAGCCTTCGATGAAGAGATAGCTAAGTTTATGTCCTTGCATTGTGATCGGTGCAAATTAGAGGCCAAGAATTTTAATGCTCTGCACAGTCATATGCTCGCAGAGCATAACATCAAAGGTTACGCAAGATGTTGCAATAGGAGATTTTCTTCACGCTTTTTATTACTTGACCATATACGCCGACATTCTAATCCTGACAGTTTGAAATGCGAGCCATGTAATCGTGTTTTTGCCGATCGCAATTCTCTGCGTCATCATTTACAAATTAAACATCAAAAAGATGAAGATAAAATGTTTTCTTGTTCTCGTTGTCCAAAGAAGTTTGTTAAAATGTATTTGTTGCGACAACATGAGCTAGTAGGCCATAGCGATCATAAAAACGCTTGTCTAGCTGTTGATGAAGAGATAGCCAAGTTTATGTCGTTGCATTGTGAACAATGCAATGAAGAGGCGACCAACTTTACAGCCCTTAATCGTCATATGCGCGCTGAACACAACGTGCGAGGCTACGTCAGATGTTGTAATAGGAAATTTCGTGAGCGTGGTTTGCTTGTTGAGCACATACGCGCACATTTAAATCCTGCTTGTTATAAATGTGAAGAATGTAGTCTTGTTTTTCCCGATCGCAAATCTATGCGTAATCATTTTCTTATGATTCATCAAAAGGAGGAAGATAAACCTTTTGCTTGTTCTCAGTGTTCCAACAAATTTGTTACAGTATACCTGTTACAACTACATAAAGTGGTTGCTCATGGTGATCCCACAAATACTTGCAAAAGCTGCAGTAGAAAGTTCAATACTTCAGCTGAACTGTCTGCTCATATCAAAGAGCAATGCCTGTGTGATACGTGCGCAGAAGTTATATGTGGAGTTGCTGCTTTTCAAAATCATATGCTCGGTCACGaaaaaaaTCTTACGGGTTCAAAAAGTTCCCATATTTGCGATGTTTATACTCACAAACCTATTCGTAATTACGAATGCAAAGTCTCCTCACTGCATGAAAATTTTCCATTCCCTTACCAGTATGCGTCTACATCGCAAGAAAACGCATCGAAAACTGCGAACGCGAATGCATACCCGATTTCATCAAACCGTCATTGA
- Protein Sequence
- MICRLCLQEICDFKSAFDSADNERTIASIIEKYFWFEFQQNDPVSTVICNNCWCKVSDFHEFYKSVEEAQSRLGENVVVKIENISVEHSIENVIVQSIPFSSKQEPTDFAEATDEDPFDMPIVDNNPSLLLKGKDNSNDKLRTQTYSINSMETVENAGDGKDEKSSDHNGKKAAVKKSLKKKKPVKSSTTGRTKNPTPKLQRNVNLCLTKNTRKLGKTENNNSKKGNVKKPIEDPKSVAFDEEIAKFMSLHCDRCKLEAKNFNALHSHMLAEHNIKGYARCCNRRFSSRFLLLDHIRRHSNPDSLKCEPCNRVFADRNSLRHHLQIKHQKDEDKMFSCSRCPKKFVKMYLLRQHELVGHSDHKNACLAVDEEIAKFMSLHCEQCNEEATNFTALNRHMRAEHNVRGYVRCCNRKFRERGLLVEHIRAHLNPACYKCEECSLVFPDRKSMRNHFLMIHQKEEDKPFACSQCSNKFVTVYLLQLHKVVAHGDPTNTCKSCSRKFNTSAELSAHIKEQCLCDTCAEVICGVAAFQNHMLGHEKNLTGSKSSHICDVYTHKPIRNYECKVSSLHENFPFPYQYASTSQENASKTANANAYPISSNRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -