Gpal018678.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- -
- Assembly
- GCA_000688715.1
- Location
- Scaffold143:49237-62486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 8.3 7.2 0.3 1 23 591 616 591 616 0.89 2 17 5.7 4.4e+02 1.8 4.7 2 19 628 645 628 647 0.94 3 17 0.54 41 5.0 0.2 3 23 690 711 689 711 0.92 4 17 0.00055 0.042 14.4 2.3 3 23 719 739 718 739 0.97 5 17 0.00098 0.076 13.6 5.5 1 23 744 767 744 767 0.97 6 17 0.00043 0.033 14.7 5.1 2 23 775 796 774 796 0.96 7 17 2.6 2e+02 2.8 0.0 1 20 805 824 805 826 0.91 8 17 0.017 1.3 9.7 0.7 1 21 846 866 846 871 0.93 9 17 0.82 63 4.4 3.3 1 23 876 898 876 898 0.97 10 17 0.039 3 8.6 0.5 1 23 914 939 914 939 0.97 11 17 0.042 3.2 8.5 2.1 1 23 952 975 952 975 0.96 12 17 0.0069 0.53 10.9 4.1 2 23 981 1003 980 1003 0.93 13 17 0.059 4.5 8.0 2.4 2 23 1007 1029 1006 1029 0.94 14 17 0.0026 0.2 12.3 3.9 1 23 1035 1058 1035 1058 0.95 15 17 0.013 1 10.0 0.6 1 23 1063 1085 1063 1085 0.98 16 17 6e-05 0.0046 17.4 5.7 1 23 1091 1114 1091 1114 0.98 17 17 4.3 3.3e+02 2.1 2.6 1 19 1119 1137 1119 1142 0.94
Sequence Information
- Coding Sequence
- ATGGATAATTCTGCTGAATCGGTTAAAATGTTGTACAGCAAGCAAATCTTAATATTCCGTTTAGTGTCTATATGGGATTTAGCCACGAATGCTGGCTACTATAAGCGTTTAGCATTTGCGGTCTACTTCTGGATCGTTGCTATATTCTTAGTAGCACTCTTCGCCTCACTGCTGATAATTGAAATCTTCTGCGATATTAATAATATAAGCGAAGTAATACGAGTAATGTTTAATTTGGCCAGCTCTCTGACAGTATTGGGAAAGTTTTTAACAGTGAAGATGAAGAATCGTTCATTTCAACAATTATTCGATTTGTTACACAGCACCGAGTACTTGCCCAGAGATTTAAAAGAGGATAAGCTTTTCAAAAGAGCTCTGCAATTGTCAAAGACGGTTTTGAAAGTCTACGGAGGCATGTCCTTGATATCAATAAATACAACATTTTTGATACAATTTGCGAAAGATACCACGGAATTGCCTTTGCCCATTTACGAACCGATCGACGCGACTGTGCCATGGAAGTATTTCATAATGTATTTCTATGAGTATCTGGGTTTTGGCCTATGTTGTGTCATGAATATAGCTTACGATTCGTTAGGCGCCGCTTTTTTCATTCACATCAAAGGACAAGTGGATATATTGAGTAAACGCTTGGAGGAGATTGGCCATAAATCCAGCTCTAAGCAGAGTCACTCACATATTAATGAGGAATTGAAAGCTTGCGCTATCTACTATGATCGCATACTGGAGCTAACTCATATGATGGAGGATTTAATAAGTAAAAACATATGCACTTATGGAAAGATGACCGTGAAATCAGATATTGACGTTTGTCTGCATTGCAATTTCACTAATTGCGAATCGGCAGATGAAAGCAGGCAGTTTCAGGATTTATTCGATGAATTGGGAACGGAATTGCAACTAGTAAAATTAGTGGAAAAGTTTTTCCATTTAAAAGTATTGGAAACTACTAATCAAAAATTATGTGAAGATTGCGTGAATCATTTAATTGAACTAGTGGATGTGGAAGAGCATGGCAGAAGATCAGACGAGAGGCATTCGCAGATAGTTTTGGAAACCAAGTGCGAATTTGAAAGTGCGGATGACGATGATCAGTTGTCTAATGAATTCTGCGAAGTAATACTATCGGATGACAACGAAGACACCGAAAGTTTTCAATTTGAAAGCGTACTCATAGCAACTGAAGATGGGAGCATTGATAACGTGACAAATGAAGCTAACTCGGTGAAGACCTTATCTCCGGAAAGTAACATCGCAAGCAAAGACGAACCTGATTATCATGATGCTTACCTTAAAGATGCATTATTTGAAGAAATGGCAGAAAATTCATGCAGTAATGAAGCAAACACGGATGATGTGGATGAAAAAGAGCTTAGCGAAGAATACATAGTACAAGAAGAAACCCAGAGCTCCGATATTGATTTTGCAGATACTGACTGTGACGAAGTTGAAGCTGAAAATGAAAGTTGTTCTACAGATTATGTGGAAGCTCAAGAATTGTTCAATGGTAATTTTTATTTTAATTATATTGAAAGAATTATGGATTACATAAAATTTCCAGAAATTCCTTGTTCTTTGGTTGTCGATCGTGTTGATTTTAACGGTTACTTAGATTTAGCACTAACTACCGAATTCGAAAATTTGGAGTTACGCTGGACTACCGAGTGCAAGTTGTGTTTGGGCAAATACGAGACACTGCAAGAGCTCTTAACGCACACTTGCCTCACGAAACAAGCCACTGAAGAAAATTTCGTGTGTCTGTTCAAAGGTTGCGATGAAGTTTTAACAAATATTAAGCATTTAGCTAGACATGTGGTTATAAGGCATTATAAAAACTTGGAAAGCTTGAAAATCTACGGAAGCTGTCCTGAATGCGAATGTAACTTTTCAGAGTTTACACAATATAACAAGCATTCTTGCTGCCGTCATTTAAGACGAATACCGGGCGTAGGTAACACATGCAAATTTTGTGATTTAAGTTTTCAATCAGTCAAAAGATACATTTTTCATATGCAATTTCATTTGCAAAAACATCGGCCAAAAATTTGCCTGATATGTTCGGCAACATTTGATGATCTCAATGAATTCTTTGAACATGTTAGCTATAAACATGAAATGGGCAATCTTAAGGCTTGTCTAAAGTGCGATCGtttttttAAAGATGAAAAACTATATAAAAGCCATATGAAAAAACATAACAAGCCTTCGTACGATTGTTCACAATGTCATAAGAAATATGAATACCGCCATAATTTGCTAACACATATGGCAACCTATCACAATTACAAAACCAAATACTTGCAGTGTGAGTATTGCCATAAACAATTTGTCAGCAATAATAGTTACCGCAAGCATCAGAAATTTCATTTGCCCGAAACGGAGGTCCATGCCTACGTTTGTATTGAGTGCGGACTAGTTGGCAGTGAAAGTGATACGTTGAAAATGCACACGGAAATCGATTCATCGTCTCCGTGCTTCAATGCTGATATTGTTGAGCAGATAGTTACtgtagtttataattgtgaaaattgtagtttagattttgaaaatGTAAAACAGCTGAAGAAACATCGTTTATCGTCGCCCTCGCATCGTGATGATTTATTTAAGTGCTCACTCTGTGATAAAGCACACGACGACTACAGACGTATGCGCAATCATGTGAAAACTCATAAAACTTATGAGAATTGGCAGGAAAATTTTCCAGTGTGCCGTTTGTATGTGTGCAATAAACAGAACTGTGAGGAATCTTATCCTCTGTGGTCGTCTCTTTATTATCACAAAAAGCGTCCTCATCGAAAGCTAAATGCTGATAAAATTTCTAAACTTGATTTCAAATGTCAGTTTTGCAAAAAACTTTGTCCCACCAAAATGTCTTTAGCTGTACACGTGGCCCGCAGCCACAATAACAAATACCTGAAATGCTCTTATTGCCATTACTCGTACAAGGACGAAAGATGCCTACAGGAGCACATTGACTATATGCACACGCCCGTAACATGTGATCAATGCTTTAAAACCATAAAAAATCGTAAAAACTTTGAAATCCACAAGCATGTCGTCCACCAGCATACGCAACGGCATTTTTGCAGTGTTTGCCAGAAAGGCTTCTATCATCGCAGCGAAATGGAAAACCATGAAAAGACAGCGCATACACAAGTAACGTATAACTGCGAACTGTGCGGGTTTACCACCAATTACCAAAAATCTATGGACATTCACATGGCTAAACATAATAATCAACAGGAATTTCGTTGCGAATTGTGTTCAAAGCAGTTCACCCGCAAACACGTTCTAAAGCAACACATGCGACGATATCATGAAAATAAAGAATTCTTTTGCCTTCACTGCGAAGATGCTTTTATTAATCTCCGATTGTTACAAAAACATTGTGCAGAAAACCATAAAGGATTAGGTAATGAACCTCTAAAGAAAAGATTTAAGAAATCGTCAGACTCTCAAATGACATTACGAGAGCAGCGTTCATTAGAAGCAGATTCAAGCGAGACCCTAGAAATTAAAGAACTGATTGAAGAAATTTATGTGGATGACAATCTTCAAGTGAATGATTTCGACGATTTGAGTTATACTGTATAA
- Protein Sequence
- MDNSAESVKMLYSKQILIFRLVSIWDLATNAGYYKRLAFAVYFWIVAIFLVALFASLLIIEIFCDINNISEVIRVMFNLASSLTVLGKFLTVKMKNRSFQQLFDLLHSTEYLPRDLKEDKLFKRALQLSKTVLKVYGGMSLISINTTFLIQFAKDTTELPLPIYEPIDATVPWKYFIMYFYEYLGFGLCCVMNIAYDSLGAAFFIHIKGQVDILSKRLEEIGHKSSSKQSHSHINEELKACAIYYDRILELTHMMEDLISKNICTYGKMTVKSDIDVCLHCNFTNCESADESRQFQDLFDELGTELQLVKLVEKFFHLKVLETTNQKLCEDCVNHLIELVDVEEHGRRSDERHSQIVLETKCEFESADDDDQLSNEFCEVILSDDNEDTESFQFESVLIATEDGSIDNVTNEANSVKTLSPESNIASKDEPDYHDAYLKDALFEEMAENSCSNEANTDDVDEKELSEEYIVQEETQSSDIDFADTDCDEVEAENESCSTDYVEAQELFNGNFYFNYIERIMDYIKFPEIPCSLVVDRVDFNGYLDLALTTEFENLELRWTTECKLCLGKYETLQELLTHTCLTKQATEENFVCLFKGCDEVLTNIKHLARHVVIRHYKNLESLKIYGSCPECECNFSEFTQYNKHSCCRHLRRIPGVGNTCKFCDLSFQSVKRYIFHMQFHLQKHRPKICLICSATFDDLNEFFEHVSYKHEMGNLKACLKCDRFFKDEKLYKSHMKKHNKPSYDCSQCHKKYEYRHNLLTHMATYHNYKTKYLQCEYCHKQFVSNNSYRKHQKFHLPETEVHAYVCIECGLVGSESDTLKMHTEIDSSSPCFNADIVEQIVTVVYNCENCSLDFENVKQLKKHRLSSPSHRDDLFKCSLCDKAHDDYRRMRNHVKTHKTYENWQENFPVCRLYVCNKQNCEESYPLWSSLYYHKKRPHRKLNADKISKLDFKCQFCKKLCPTKMSLAVHVARSHNNKYLKCSYCHYSYKDERCLQEHIDYMHTPVTCDQCFKTIKNRKNFEIHKHVVHQHTQRHFCSVCQKGFYHRSEMENHEKTAHTQVTYNCELCGFTTNYQKSMDIHMAKHNNQQEFRCELCSKQFTRKHVLKQHMRRYHENKEFFCLHCEDAFINLRLLQKHCAENHKGLGNEPLKKRFKKSSDSQMTLREQRSLEADSSETLEIKELIEEIYVDDNLQVNDFDDLSYTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -