Basic Information

Insect: Glossina pallidipes
Gene Symbol: -
Assembly: GCA_000688715.1
Location: Scaffold168:545777-563460[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.3 1e+02 3.7 0.2 1 23 1742 1765 1742 1765 0.93

2 12 0.4 31 5.4 3.0 1 23 1938 1960 1938 1960 0.92

3 12 0.00035 0.027 15.0 2.2 2 23 1963 1984 1963 1984 0.96

4 12 7.4e-05 0.0057 17.1 0.2 3 23 1992 2012 1990 2012 0.98

5 12 3e-06 0.00023 21.5 5.8 2 23 2019 2040 2018 2040 0.97

6 12 6.1 4.7e+02 1.7 0.1 5 23 2054 2072 2053 2072 0.96

7 12 0.00098 0.075 13.6 0.2 2 23 2111 2131 2110 2131 0.97

8 12 5.5e-05 0.0042 17.5 0.6 1 19 2137 2155 2137 2159 0.95

9 12 3.1e-05 0.0024 18.3 1.7 1 23 2167 2189 2167 2189 0.98

10 12 0.00013 0.0098 16.4 6.5 1 23 2195 2217 2195 2218 0.96

11 12 6.6e-05 0.0051 17.3 6.1 1 23 2223 2245 2223 2245 0.98

12 12 0.00057 0.044 14.3 6.2 1 23 2251 2273 2251 2274 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.3	1e+02	3.7	0.2	1	23	1742	1765	1742	1765	0.93
2	12	0.4	31	5.4	3.0	1	23	1938	1960	1938	1960	0.92
3	12	0.00035	0.027	15.0	2.2	2	23	1963	1984	1963	1984	0.96
4	12	7.4e-05	0.0057	17.1	0.2	3	23	1992	2012	1990	2012	0.98
5	12	3e-06	0.00023	21.5	5.8	2	23	2019	2040	2018	2040	0.97
6	12	6.1	4.7e+02	1.7	0.1	5	23	2054	2072	2053	2072	0.96
7	12	0.00098	0.075	13.6	0.2	2	23	2111	2131	2110	2131	0.97
8	12	5.5e-05	0.0042	17.5	0.6	1	19	2137	2155	2137	2159	0.95
9	12	3.1e-05	0.0024	18.3	1.7	1	23	2167	2189	2167	2189	0.98
10	12	0.00013	0.0098	16.4	6.5	1	23	2195	2217	2195	2218	0.96
11	12	6.6e-05	0.0051	17.3	6.1	1	23	2223	2245	2223	2245	0.98
12	12	0.00057	0.044	14.3	6.2	1	23	2251	2273	2251	2274	0.96

Sequence Information

Coding Sequence: ATGGTGAAGAATATACAGTGCCCCGTTTGCACGCTTTACCTGCACGCAGGTATGAATCTATGTGATCATTTGGAAACACATCCCAAAGAGCAGGTAATTAAGGCTCTGGTCGAAATGACAATATCTGGAAATGAAAATCGTTTGCTGACTACTCAGTTAATGGAAGAAACTAAGAATATAAGAGAGAAAGAGAGAAACTCTGCCGAAATTGCGAACAACCATTCTCCACCGATTAAAGATCATGACGTGAGCAGTAATTGCAGTATCTCTGCCAGTATTAGTTCGTTATCAAATCAAAGTTCAAATcacacacacacaACTTTATCTAACGCTATTAACTTTGGTGAAAGTAATGCGACAGATGGATGTTCTACTTTCTCATTGACTTCTTCCAAAACGGCAATAAAATTTAATTCGGATTCTGGCAGTGACCTTAAAAATCCATTAGCCGAGCCTCCTGGTGAGGCAAGCGGCGAATTTATAAAGCAAACTTTTAATCAATCTTCAAATACGAATATCAATCAAGTGTATCAATCCCAAACGACAACTATGTTGTCTAATGTGCCGACTGATTTTTCAATATTTGGTAGCCAACGGTATCAACATGCGCCATTGCCAAGTCAGCAGAATAGCGGGCAAAGTAGTACCACTGGTCACTTACATGCTCCCACTCAGCTGGTATCTTCTCAGCATCATGTTCAATATCAGGAATATACACGTGGCAGCTTACCGCAAAACAGCCCAACGCAACTACCTATCTTACGTGCAGAGTCAATATCTTCAGGGACTGTTCCATATCATAGCCAACAAAAACAACAATCACCCAGTGAATTGCCGATGCCAATGCAATTAAACACTGTTTCAAACAGTCAACGTCAGCCGCAGATGtatcctagccatcatcatcaacaagaacagcagcaccaaccacaaccgcaacaacaaccacaacaacaacagcaagaagaacagcatcatcagcaacagcagcaacaacgacagcagcagcagcaaccacaacagcagcagcaacaatcgcttgctcagcaccaccatcaaaggcaacagcCTCACATTTTCCCAGCGGAATTACCTCCCCCACCGCCTTTACAGATGTTTGCTTATCAATCGACTGTTCCACCACAATATCAGAAACCCCCACCGGCCTATGGCACAGCAATTAGTCAAATTCGATCTCAAAGTAAACAAAATAagtatcaacagaactcaactgtatcacagctgcatcatcaacaacaacaacagcagcagcagcagcagttgcagttgcagcaacaaacttcaccggtaccatcttcacATAGTTTGCAACAGTCATCACAACATTTGTCCCTTGAAAGTCCAAGTCAAAATCAAAATGTTCAACGTCAGCTCTTCAATTTCTCTCACATTCAGCAGCAAAGCCTAAATTCCATTGCTCAGCATCTAGCAACACCGTCCAAGAGGCAAATACTTTCCTTAAAAACGGAAACAAAAAACGGAACACCAACTCCATCTCCAGTGATACGATCGCAGCATTCGTTACCGCAAGATAAACATTTGGCGGATCAACAAACAAACGTGCATGCCCAAGATTCTAATGGAAGCCATACAAAACCTGGCAGTGGATTATACACTACATCGAATTCATCGACAAGTGCCCAACCATCGCTATCGACTACTACTTCTGCAAGCAATGCTGGGAATTCTATATTCGGTCGAAGCCCACTTGTACCATATCCTATTTTGTTATCGTCTGCTACTTCGACACTTGCTTCGTCGGCGACTTCTGTGTTACGATATGCTGAATCACCCGTTGCTCATTACCTTGAACGCGAAAATGGTGACTTTATTGTTCAAGAAACGCCGAAGCACGTAATGGAATATGTTGAAGAAGAAGACGGCGAATTCTCCGTCATTGAGCGCATCTATCAATCACCTCCTAGTGTTCTTCATATTCATGACGAAGACGACGTTGATGGAGATGTCAGTAGCAAAGAAGCACTATCTCCTAAAGTTAGTGGAAACAAATCCAAATCGTTTGATAATGAACAAAAATCTGAGAAAGTTGATAATTCTGATAACGAAGAAGATTTCATGAGTATTTCAGGCGAAAGTGACCAGGAAGAGTTTGTGGCGAGTAATCATCCAAAAAGTAAGAAACCCGGCGTTGATTCCATGTCCAAGCAATCAGATGTGAGTTTAACTAATGAAACAGAAACACTGTCGATTTCAAAAATAACTCCGTCGACGAATGCAAGTAGTCCTCTCAGTCAGGATTCAATACGTAAAAAATCACCCAAAAATACTATCACAGTGTTAAGTGATGTTCAGTTAAATTTAAACGAATACTTGGACTTAGTGGGCAACATCATAGCTTCTAGCAAGATATCTCCTCAACGAAAAACTCTTTCGGCCATAGCACCGGTACCTTTAGTAAAAATTGAAAAGGAAGAACCATTAGACGACGATGAGGACCAAATACAAGAACATTCAACGGATGAAGGCACATCTACTAAACCACCACTGAAAGCCGACAAACATGAGACTGAAAAACCAACTGACACCTCAATTCAACCCACTGAGGAAGATGAGAAGAAACCCGACATTTTCGAATGCAATATTGAAAGTGACAATAGCAAATGCGGCACACCATATTCCAGTAATTGTTCTGGTCACGCAACTAGCGTAATACGCATGGCAACAACTTCTACTAGTCAGCAAATGCAACAAACGAGCCATGTAAACGACGGTCTGTTGGGGGAGGGGCTACTAGTGAAGCAGAAGGAAAAGGAGACTGTATATGCAGATAAAGAACCAAAAAGTATTACCATACGAAGAGACTCAGATAGAGCTGAGGATCTCTCAAAACCGCAGCCCAAAATTCAACATAATCTGACGGGTTTCACTTCAGACTATTTACGGAAACCTTTTGCTACTGCCATAGGACGTAAGGTTCCTAAAAAGTTAGTTATCAAGCCCAAATCCTCAAAGACTGAAATATCGGCAACAAATGCTTGTGCATCCTCACCGACGGGTGACGATCAAAAACCCTCAACTTCAGCCAAAGCTCAAGAAGAATATGCTAAACTTAAACAACGAATATCAACTGACAGTTCTAATGAAACAACGCCTTTAGTGCAACAAAAAGGTATGTTGTTTGCACAGTTGGATGAAAATTATAAAGAAAGAAATCGTTGTAATAAAACGGCAGATTGTGATAAACTACAGTTGAAATCTTCGCGCGAATTTGACTACATTGAAGATAATGAGCGTGAGCAGTTATCTGTTGCAGAGAAATTATCGAACTTAAGTAAAACTACGACAATAGTTGAGAAAGAAATCAATAAGTCTTATGCATCAGCAGAAAAATGCAAAAGGCTAGAGGAATTGCATCAACACGTTATAATGGATAAGAGATCCAATGAGCGGCCAACTTTAGCTACAACAAATTCTTCAAATTTGACGCCAACGCAAGATGATCGTGAGAAACGAGTGAAGAAAAATTTGGAATTAATATCATTTAGAGAGCATGGAGAAGGTCTAAAACAGAAACAACGGACGATTATTGAGGATATAGTAAAAGTGAAAAGTGAGCCTTTAAGCGGTGGAAACTATGAAAATCAATTGCCAGAAACTGACTTGAATATCGTTGACCAGCAACTCGAGTGTAGTTCTGCACACACCGTAATGGAGTGCAAAGAGGAGAAACCCTGTCTTACGGAAACTTGTCTACCATCAAGTACTCCGCACTTAAAAACCGAAAGTAACATTGCCGACGACGCTCGAGTCTTATATGATTTTGCCAATTCAAAGAAAGTCACCGCGACTGAAACTTCAAGAAAAGAATTTTTATCATCCTCCGTGGCTTTTTCAAAACAGAAAATGCAGGATTTCCCAAACAGTTCAAATATTGATTTTAGCTCCGCTCAGTCCGAAAAGGAGAATAAATCCGAAATGGTTGTTATAAACTCTTCCTATTCTTCAGAATCCGCCGTCGATGTTAATTTGCAGAACTGTTCATTTCCGCAAAGTTCTTCTGTGCTTCCGTTCACTAACGCTCAACCAAATCAAGCGCAAAATTATATCGACTATCCCTTCGGATTTCTATACAATAGCAACAACAGCAATAATAATCACGTGTCACAACAAGAGGATATTAAACGTTCTCAAACTTTTTATTCAAATATGGCACACAGTGTTTCAGTCTCAAATAGTAGTAATTCGAATTTGCTCGAAGATAGTTCCGCAACGAAACAGGATCAGAGTCTTATATCTAATCAACAGCATAATCAAAATCGAAACGTGGCGGAATGGTTTAATAGCACCGATGCGAATAATACTTCATCAGTCTCTACGGCAGTCACGAGCAACATTGAAGTTAGTTTTAATTCGCCTTTGTCGGTTGATTGCAATGCATCCCTCGATGGCGGCGACGTTAGTAAATATTTAGATTTAGATGCTTGTAAACGAGAACAGAACTTCGATATAATAGATAGCAGCAGAAGCCAAAATCCGCCTCAGCCACCTCCTTCCTCGCCAAATTCATGTTCGTTTGCTGGAGCTACTGACAATAGTTTAAGTGGCGTTTGCCCTGTATCTGCCGCTCTTAACATACGAACTGATGAGAAAATGCCTGCCAAGGGCGAAATCTCTGAACAGGAAAGCAATTGTGATATAGAAAATTCGTGGAGTCAGCCGATGTACGGCGACATATCAGCGCGATTTTTTAGAACATCCTTTCCGGGCATGTTCACCCATGACAGTGATTGGCACCACGAAGACTATTTTACAGTTCAAGACTTGAGTGCATCGACCACAGCACCTGCGACGAATGGCAGCAGTCGGACTAGAAGTTTTGACCTCCGCCTGCCGTCGGAAACAACTAGTGCAGTAGCAGATAATTTTATTTCTAGCGGTTTACAAATCTTTTCTCAGAATAGCCAGGATAACATTAGAGGTAACGCAGACATATTACCTTCTACATCAGGCAGAGGCAAAAAGAAACGTAAGCGAATTTCGCAAGACGATAAATTAAATGTGACCACTTCACTGACGCAAGTTCAACATATTCAAGAAACGAGGGAGCCGGAATCAACTGATTTTGAGCTACCGCAAGCATCAGCAGTACCATCATCGTCCGAATTTTTAGCTGGACCTGTCGTCCTAGGAGATTCTGCGCTTGTACAAAATTTAGGTCAACAAAAGCCGCGCGAAAAGACGTACGAATGCGCACGCTGCTTCGCCAAATATTCCAAATTAAAAGATCGGAATGCTCACATGATTGCAGCTCACAATTATGTACGTCAAAATCGGAAACTTGTTTGTCCCCAAACGATTATCACTTCAACTATAACAAGCAACGAAGCTGACGTGACCGATTTGACGCCAAGTACCAGTGAGGGTGTCATACTATCAAAATCCCTTCAAATAGAAGATCTACCTGAAGATTCAAAGCATGGCATTGTCAAAATCGAAACAGAGCCACACGCCGCTGACGTAAATCCTGTAAATAACGACTTGGTGACAGAAATGCCAAAAGAACTCGATGATAATAAACAAAATGTGTCCATAGTACCGGTGGAGTCTTCCTACGCTGCTACGGAATCTAATGTTACAACGTCAATTGAAAAAGAGGAACAAACATCGACGCTAGATATTAAATATCCTGGTTTGCAACGTTTATCTCTTAATGCGCCCACCACTAAGTTGACTACACTCTATCGAATGCTGGTCACGTACAATATGAGCAATTTGAAAATAAAACAGGATCTAACGGAATTAGATGAGAAGCTAATGGAATCGTTGATATTCTATTGTCATGTTTGTCGACAAAGTTTTTCGTCGGTGAAATTTTATGACATTCATTTAACTGAGCATCCTGCTGAATGCTTTTCATGTGGAAAGAAATTTCAAAGATGGAAAAACCTATCATTACATTTAAAACGTCATATGGGTTGGAAAGAGTTTGGTTGCAATGTTTGCGaaaaaaaaTTCGTTGTACGTAGTGCGCTAGTGGAGCATATGCGAATGCATTCTGGTCAATCACCTTTGAAATGTAAAATATGTGGTAAACACTTTAAGCGATATTCGAATTTAACACAACATCGTAAACGCCATACTAAACAGCAGTTAGTGAGaaaaaaaGAATATGTATGTTATTGCGGTGAAGTGTTGCCATCGAAGGCGAGATTTTTATGGCACAAAGAAACACACGATTCAAAGCCGAAATGCTGCCCACATTGCTGTGATCGTTTCGTTCATGTTAATTCTCTTAAACGACATATACGTCTCGCACATTCGGACAAGTTCGATTACGTTGAACCAATGGAGTGTCCGATATGCAAGCAAGTATTTTCGAAGGCATCAATGAAATCGCATATGGCCACTCATTCGACCGAAAGTCAATATGATTGCACTATATGCAGTAAATCATTCTCTACTAAATGGAACTTGAAAATACATTCGTGGGTGCATGCGAATCGTACCGCTAAACCGTTTAAATGCGAACACTGCCCTAAGGCATTCGTGCGCGAGCTTGATTTCAAGAATCACATCAATTCGCACAAACAAATCCGACCATACACATGCGAAGTTTGTGGATGCAAATTTATAAGGAAATATAACTATATGCGGCATCGTAGGGAACATCATGGGGATAAAAAGTTTACATGTCAAATATGTAAGAAATCGTTTCATCGCCATTACTATCTTATTGAGCACATGCGGATACATACTGGCGAAAGACCCTTCCAATGCACCATTTGTGGTAAAAGTTCCACTACAAAGACGAATCATAACAAACACATGAAAATTCATCATTCTCGCGACCCATTTACAGTGGAAGTATAA
Protein Sequence: MVKNIQCPVCTLYLHAGMNLCDHLETHPKEQVIKALVEMTISGNENRLLTTQLMEETKNIREKERNSAEIANNHSPPIKDHDVSSNCSISASISSLSNQSSNHTHTTLSNAINFGESNATDGCSTFSLTSSKTAIKFNSDSGSDLKNPLAEPPGEASGEFIKQTFNQSSNTNINQVYQSQTTTMLSNVPTDFSIFGSQRYQHAPLPSQQNSGQSSTTGHLHAPTQLVSSQHHVQYQEYTRGSLPQNSPTQLPILRAESISSGTVPYHSQQKQQSPSELPMPMQLNTVSNSQRQPQMYPSHHHQQEQQHQPQPQQQPQQQQQEEQHHQQQQQQRQQQQQPQQQQQQSLAQHHHQRQQPHIFPAELPPPPPLQMFAYQSTVPPQYQKPPPAYGTAISQIRSQSKQNKYQQNSTVSQLHHQQQQQQQQQQLQLQQQTSPVPSSHSLQQSSQHLSLESPSQNQNVQRQLFNFSHIQQQSLNSIAQHLATPSKRQILSLKTETKNGTPTPSPVIRSQHSLPQDKHLADQQTNVHAQDSNGSHTKPGSGLYTTSNSSTSAQPSLSTTTSASNAGNSIFGRSPLVPYPILLSSATSTLASSATSVLRYAESPVAHYLERENGDFIVQETPKHVMEYVEEEDGEFSVIERIYQSPPSVLHIHDEDDVDGDVSSKEALSPKVSGNKSKSFDNEQKSEKVDNSDNEEDFMSISGESDQEEFVASNHPKSKKPGVDSMSKQSDVSLTNETETLSISKITPSTNASSPLSQDSIRKKSPKNTITVLSDVQLNLNEYLDLVGNIIASSKISPQRKTLSAIAPVPLVKIEKEEPLDDDEDQIQEHSTDEGTSTKPPLKADKHETEKPTDTSIQPTEEDEKKPDIFECNIESDNSKCGTPYSSNCSGHATSVIRMATTSTSQQMQQTSHVNDGLLGEGLLVKQKEKETVYADKEPKSITIRRDSDRAEDLSKPQPKIQHNLTGFTSDYLRKPFATAIGRKVPKKLVIKPKSSKTEISATNACASSPTGDDQKPSTSAKAQEEYAKLKQRISTDSSNETTPLVQQKGMLFAQLDENYKERNRCNKTADCDKLQLKSSREFDYIEDNEREQLSVAEKLSNLSKTTTIVEKEINKSYASAEKCKRLEELHQHVIMDKRSNERPTLATTNSSNLTPTQDDREKRVKKNLELISFREHGEGLKQKQRTIIEDIVKVKSEPLSGGNYENQLPETDLNIVDQQLECSSAHTVMECKEEKPCLTETCLPSSTPHLKTESNIADDARVLYDFANSKKVTATETSRKEFLSSSVAFSKQKMQDFPNSSNIDFSSAQSEKENKSEMVVINSSYSSESAVDVNLQNCSFPQSSSVLPFTNAQPNQAQNYIDYPFGFLYNSNNSNNNHVSQQEDIKRSQTFYSNMAHSVSVSNSSNSNLLEDSSATKQDQSLISNQQHNQNRNVAEWFNSTDANNTSSVSTAVTSNIEVSFNSPLSVDCNASLDGGDVSKYLDLDACKREQNFDIIDSSRSQNPPQPPPSSPNSCSFAGATDNSLSGVCPVSAALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYGDISARFFRTSFPGMFTHDSDWHHEDYFTVQDLSASTTAPATNGSSRTRSFDLRLPSETTSAVADNFISSGLQIFSQNSQDNIRGNADILPSTSGRGKKKRKRISQDDKLNVTTSLTQVQHIQETREPESTDFELPQASAVPSSSEFLAGPVVLGDSALVQNLGQQKPREKTYECARCFAKYSKLKDRNAHMIAAHNYVRQNRKLVCPQTIITSTITSNEADVTDLTPSTSEGVILSKSLQIEDLPEDSKHGIVKIETEPHAADVNPVNNDLVTEMPKELDDNKQNVSIVPVESSYAATESNVTTSIEKEEQTSTLDIKYPGLQRLSLNAPTTKLTTLYRMLVTYNMSNLKIKQDLTELDEKLMESLIFYCHVCRQSFSSVKFYDIHLTEHPAECFSCGKKFQRWKNLSLHLKRHMGWKEFGCNVCEKKFVVRSALVEHMRMHSGQSPLKCKICGKHFKRYSNLTQHRKRHTKQQLVRKKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLKRHIRLAHSDKFDYVEPMECPICKQVFSKASMKSHMATHSTESQYDCTICSKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVRELDFKNHINSHKQIRPYTCEVCGCKFIRKYNYMRHRREHHGDKKFTCQICKKSFHRHYYLIEHMRIHTGERPFQCTICGKSSTTKTNHNKHMKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00748471;
90% Identity: iTF_00748471;
80% Identity: -