Gpal011893.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- grau
- Assembly
- GCA_000688715.1
- Location
- Scaffold352:89043-97119[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 1 10.0 1.8 2 23 261 283 261 283 0.95 2 19 0.0029 0.22 12.1 2.8 1 23 291 314 291 314 0.91 3 19 0.053 4.1 8.1 0.1 2 23 335 357 334 357 0.95 4 19 0.15 12 6.7 1.0 6 23 366 383 366 383 0.98 5 19 0.00094 0.073 13.6 0.4 1 23 389 412 389 412 0.96 6 19 0.055 4.2 8.1 0.8 1 23 420 443 420 443 0.94 7 19 0.0098 0.76 10.4 0.3 2 21 449 468 448 469 0.94 8 19 4.4 3.4e+02 2.1 2.4 3 23 473 493 471 493 0.95 9 19 0.23 18 6.1 2.1 2 23 774 796 773 796 0.93 10 19 0.02 1.6 9.5 1.2 6 23 805 822 805 822 0.99 11 19 0.017 1.3 9.7 1.3 1 23 828 851 828 851 0.94 12 19 8.6e-05 0.0066 16.9 1.2 1 23 859 882 859 882 0.95 13 19 4.6 3.5e+02 2.0 0.2 2 23 903 925 902 925 0.88 14 19 0.0043 0.33 11.6 1.3 6 23 934 951 934 951 0.99 15 19 0.00056 0.043 14.4 1.8 1 23 957 980 957 980 0.96 16 19 0.012 0.89 10.2 0.2 1 23 988 1011 988 1011 0.91 17 19 0.015 1.1 9.9 0.2 2 21 1017 1036 1017 1037 0.95 18 19 0.015 1.1 9.9 2.1 3 23 1041 1061 1039 1061 0.97 19 19 0.044 3.4 8.4 0.1 2 20 1073 1091 1073 1092 0.93
Sequence Information
- Coding Sequence
- ATGGAAGCAACAATGATTTGTCGCTTGTGTTTAAAAGAGGTTAATGAATTTAAAAGCGCGTTTGCTGTGACAGAGAATAAACCAACCATGGCTTCAGTAATCAGAATTCATTTCTGGTTCGAGCTGCAGGAAAACGATCCCATATCAACAATGATTTGTAACAATTGTTGGTTTAAAATCTCCGATTTCCATGAGTTCTATAAAAGCGTTGAGGAAGCTCAAAGTCACCTGGGAGAAAATGTCACAGTGAAAATTGAAAATATTAGCGCGGAGCACTCTATAGAAAATGTGATGATTCCGTCATTTTCATTGTCCAGTAAACAGGAACCTGAAGTCAATTTCGACGAAGTTAACGATGAAGTTCCTTTTGACATGATGACGGTTGAAACGCCTAGTACGCGTACAGATCTAAGAACCGACGATATATGGAGAAACCAAATAAACAGTGATAATAATGCCATAGAGGATGTTAAGGACGTTATTGACTACAAAGATGAAGTCTTCAATGAGCATAACTCCGACCCAGTTAACAAACCAATTTTTGCAGAAAATGAAGAAAGTGATAAACTAACCGTAAACAAAAAAGGAATAAGTAAAACTACCAAATTGTCAGTTAAGACACAACGGAATGCCCCGCTAGCACAGAAAATTCATTGCAAAAACGTACGTGCAGCAAAAGTGCCTGAAACAGAAAAGAACAATGTCaaaaaaaCGAAGGAACTTTCTGAACAAGCTAAAGCTATTCGTGAGCAGGGCTTAGCCTTTGATGGAGAAATAGCCAAATGCGAGCAATGTAATCGTGTTTATGCTAATCGCAATTCAATGCGCACTCATTTCCTTAGCAAGCATAAAAACGACAAAGAGAAAGTATTTACATGTTCCCAGTGCCCTCAGAAATTTTTTAAAAAGTATTTACTAAGAAAGCATGAACTGTTTGGACATAGTGATCATAAGAACGCTTGTATAGCCGTCGATGAGGAGATAGCTAATTTTATGCCATTGCGTTGCGAACTGTGCAATGAGGAGGCTACCAATTTTACAGCTCTTAAAGGTCACATGCGCGATGAACATAACATCAAAGGCTACGTCAGATGTTGTAATAAGAAATTTTGTGAGCACGGTTTACTTGTCGAGCACATACGCGCTCATTTAAATCCTGCATGTTACAAATGTGAAGAATGTAGTCTTGTCTTTCCCGATCGCCAGTCTATGCGCAATCATTTCCTTATGGAACACGGAAAAATGGAAGATAAACCTTTTGCTTGCTCTCTGTGTTCTAGCAAATTTGTGACAGTGTATCTGTTACATCGACATACAGCAGTTGTCCACGGTGACCATAGCAAAACCTGCAGCAGTTGTCGGAAAAAATTTGACACTGCAGCGCAGTTATCGGCTCATGTCAAGGAACAATGCTTATGTGATACATGCGCGGAAGTTGTATGTGGGACTGCTGCACTTCAACATCACCTTTTAAAACATAAGAAAAATACCGTTGAAATGGAAGAAGAAGAAGCAAGAATGATTTGCCGCTTGTGTTTAAAACAGGTTAATGAATTTAAAAGCGCATTTGAAGTAACGGATAATAAACCAACCATGGCTTCAGTAATCAAAAAACACTTCTGGTTTGAACTGCAGCAAAACGATCCAGTATCAACAGTAATTTGCAATAATTGTTGGTTTAAGGTTTTTGATTTCCACGAGTTCTATAAAACCGTTGAAAAAGCTCAAAGTCAATTGGGTGAAAATGTCGTCGTGAAAATTGAAAACATTAGCGCGGAACATTCCATAGAGAATGTGATGATCCCGTCATTTTCATTGTCCAGTAAACAGGAACCTGGTGTTAATTTCGACGAAGTTAATGATGAAGTTCCTTTCGATATGGTTGCGACGAATGACAACACGCGTACAGATGTCAGAGCAGATGATTCCCATGATATATTGGGAACTCAACAAGGTTGTACTAATAACGCCATAGAGGATGTTAAACATGTCGATGTTTGCAAGGATGATAGATTTAATGATCACATTGTTGACCCATTTAACAAGGAAGaaaatgacaaaaataataaaataaacaaaaggaaaaaaGCTGTTAAATCTTCAGGAAAGACTAGAACTACCAGATCTTCGTCTAAGGTACAAAGGAACGATTCATTGGCACAGAATATTCATTCCTcaaaaccagctgcaacaaaagtgcgcaagattgaaaagagcaaagtcaaaaaagtgaaaacaaaagAATTGTCTGAACAGGCTAAAGCAATTCGCGAGCAAGGTTTGGCGTTTGACGAAGAGATAGCGAAATTTATGTCTCTACGTTGCGAGCTATGTAGCCTTGAAGTAAAGAATTTTCATGATCTTGAAAGTCATATGCACGCAAAACACAAAGTCAAAGGTTACGCCCGATGTTGCAATAAGAAATTTTCTAAACGCTTTTTGCTGCTGGATCACATACGCCAACATTCAAATCCCGATTGTTTCAAATGCGATCCATGTAAGCGGGTTTTCGCAGATCGTAAATCTATGCGCAATCATTTCCTTATCAAACATCAAAAGGATGAAGATAAAATGTTCTCGTGTTCTCAATGTTCTAAGAAATTTGTTAGAAGATATTTATTGCGACAGCATGAATTAGTGGGTCATAGCGATCATAAAAACGCTTCTTTAGCTGTTGATGAGGAAATAGCCAAATTTATGTCATTACATTGTGAACTATGCAGCGTAGAGATAGAAAATTTTACTGCTCTGCGCAATCATATGGTCGCAGAGCATAACATCAAAGGCTACGTCAGATGTTGTAATAAGAAATTTTCCAAACGTTTTTTACTTTTGGAGCACATACGGACGCATTTAAATCCTGCTTGCTACAAATGTGAGAACTGTAGTCGTGTATTTCCCGATCGTAAGTCCATGCGTAACCATTTTCTTATGAAACATCAAAAGGATGAAGACAAAACATTTGCTTGTTCTCAGTGTCCCAGCAAATTTGTTACTGTGTACCTATTACAGCGCCACAAAGTGATTGCTCACCGTGATCGTACTAACACTTGCAAAAGTTGTAACAGAAGGTTTAGTACGGGTGTTCTGTTGTCTGCTCATATCAAGGAGCAGTGTTTGTGCGATACCTGCGGGGAAGTTGTGTGTAACACAGCTGCATTTCAACGACATCTATTGAGACATAAAAACTGCCTTGCGGAATCCAAAGAATTGCGCACCTGTGATATTTGCCAAAAGGTATCGACAAGTCAAAAAGACATGTTGGCTCACAAACTTTGCGCTCATAATCCCTTACGTACTTACGAATGCAATACGTCCTCTGTGCACGATAACTTTCCATTTCAATATCCATATGCAATCACATCCCAAGAAAATGCATCCACAATGCTCGCGTACCCGAACCATCCGTATTCCGTCAATCGTCGTTGA
- Protein Sequence
- MEATMICRLCLKEVNEFKSAFAVTENKPTMASVIRIHFWFELQENDPISTMICNNCWFKISDFHEFYKSVEEAQSHLGENVTVKIENISAEHSIENVMIPSFSLSSKQEPEVNFDEVNDEVPFDMMTVETPSTRTDLRTDDIWRNQINSDNNAIEDVKDVIDYKDEVFNEHNSDPVNKPIFAENEESDKLTVNKKGISKTTKLSVKTQRNAPLAQKIHCKNVRAAKVPETEKNNVKKTKELSEQAKAIREQGLAFDGEIAKCEQCNRVYANRNSMRTHFLSKHKNDKEKVFTCSQCPQKFFKKYLLRKHELFGHSDHKNACIAVDEEIANFMPLRCELCNEEATNFTALKGHMRDEHNIKGYVRCCNKKFCEHGLLVEHIRAHLNPACYKCEECSLVFPDRQSMRNHFLMEHGKMEDKPFACSLCSSKFVTVYLLHRHTAVVHGDHSKTCSSCRKKFDTAAQLSAHVKEQCLCDTCAEVVCGTAALQHHLLKHKKNTVEMEEEEARMICRLCLKQVNEFKSAFEVTDNKPTMASVIKKHFWFELQQNDPVSTVICNNCWFKVFDFHEFYKTVEKAQSQLGENVVVKIENISAEHSIENVMIPSFSLSSKQEPGVNFDEVNDEVPFDMVATNDNTRTDVRADDSHDILGTQQGCTNNAIEDVKHVDVCKDDRFNDHIVDPFNKEENDKNNKINKRKKAVKSSGKTRTTRSSSKVQRNDSLAQNIHSSKPAATKVRKIEKSKVKKVKTKELSEQAKAIREQGLAFDEEIAKFMSLRCELCSLEVKNFHDLESHMHAKHKVKGYARCCNKKFSKRFLLLDHIRQHSNPDCFKCDPCKRVFADRKSMRNHFLIKHQKDEDKMFSCSQCSKKFVRRYLLRQHELVGHSDHKNASLAVDEEIAKFMSLHCELCSVEIENFTALRNHMVAEHNIKGYVRCCNKKFSKRFLLLEHIRTHLNPACYKCENCSRVFPDRKSMRNHFLMKHQKDEDKTFACSQCPSKFVTVYLLQRHKVIAHRDRTNTCKSCNRRFSTGVLLSAHIKEQCLCDTCGEVVCNTAAFQRHLLRHKNCLAESKELRTCDICQKVSTSQKDMLAHKLCAHNPLRTYECNTSSVHDNFPFQYPYAITSQENASTMLAYPNHPYSVNRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -