Basic Information

Insect: Glossina pallidipes
Gene Symbol: -
Assembly: GCA_000688715.1
Location: Scaffold187:23213-31952[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 0.95 10.1 1.9 1 23 239 261 239 261 0.99

2 9 0.00013 0.0098 16.4 0.7 1 23 267 291 267 291 0.96

3 9 0.00077 0.059 13.9 2.2 1 23 299 324 299 325 0.97

4 9 4.7e-06 0.00036 20.9 1.1 1 23 333 355 333 355 0.95

5 9 7.4e-05 0.0057 17.1 0.7 1 23 363 387 363 387 0.94

6 9 0.0014 0.11 13.1 2.3 1 23 393 415 393 415 0.97

7 9 0.00017 0.013 16.0 1.1 2 23 422 444 421 444 0.95

8 9 0.013 1 10.1 1.3 1 23 450 472 450 472 0.97

9 9 3.4e-07 2.6e-05 24.5 1.4 1 23 478 500 478 500 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	0.95	10.1	1.9	1	23	239	261	239	261	0.99
2	9	0.00013	0.0098	16.4	0.7	1	23	267	291	267	291	0.96
3	9	0.00077	0.059	13.9	2.2	1	23	299	324	299	325	0.97
4	9	4.7e-06	0.00036	20.9	1.1	1	23	333	355	333	355	0.95
5	9	7.4e-05	0.0057	17.1	0.7	1	23	363	387	363	387	0.94
6	9	0.0014	0.11	13.1	2.3	1	23	393	415	393	415	0.97
7	9	0.00017	0.013	16.0	1.1	2	23	422	444	421	444	0.95
8	9	0.013	1	10.1	1.3	1	23	450	472	450	472	0.97
9	9	3.4e-07	2.6e-05	24.5	1.4	1	23	478	500	478	500	0.97

Sequence Information

Coding Sequence: ATGCTAGAAATTCGCACAAATATAACAGTAAATAAACTAAGAGAAATGTTTATTAAAGACTTCAAGGAGTTGCAGTGCCGCACATGCCTCTCGACAGAATCTAAGGGAAAGGGAATGTATCAGATATTCGAGACGGCCGATTTTGCTAAAAAGTTAGCGTTATGCTGTTCGTTGGAGGTCGATCCCTTAGATTTATATCCTCAACATGTTTGTGGCAGTTGTTACGAAAAGATTTTGGATTTTTATGAATTTAAGCTCATGTGCAGCAATTCTTTGCAAAAATATAAAGAAACGTTAAATAAACTTCAGAATAATGCCGAAATAAAGCAAGAAGATGATCTTCAGCATTTATTAGAAGACGAAAAGCCGTTATATGGCTTACATGAAAAACTACAATTAGAGCTTGTGGAGATCAAAAGTGATATTTTGCTTCAGGATAATTTACCTATCgaagaaacaacggaaattgaaataattagaaagaaaaaaggaaaaacatccagaaagcaaacTGTTGACAAGATAATAATAACAACTGAGGATACAAAAAGATCGAGACGTGTAACAAGATTGAAAAAGAAAGGTAGTAAAAAACAAATTGTACAATCCGCCGATGAGGAGGAGGTTAGAAATCAAAAAACTGGGAAACTAAAAGAACAAGAGTGCGTGTCAGCAGTTAAATCTTCTaaaaaaaCTGCAACGTCTAAGCGAGTCTATAAATGCGATTTGTGTGAGGCACGCTTTTTTGTGGAACATCGACTAATAGCCCATAAGCGTAAACACGAAGGTCTTTCACCATATCCTTGCACTATAGAAGGTTGCGAACGTTCCTATAATCGTTTGCACAACCTGGAGCAACATTTGAAGGATCATAAAGGCGATAGGCCACGACGTTATAAATGCGACGTGGAGAATTGTGATCGTGCTTATAAGACTAAATCGGCCATAAATATGCATAAACGTAAAACGCATCATTTAGGTCCCGCCCTGAAAAAGCATATTTGTGAAATTTGTGGTAAAATCTTTAAAACTTCAGCCTCCCTCAACGATCATAGGTTTTCGCATAAAAGTGAAGCCGAATTACCGTTTGCTTGTGAAGAACCTAATTGTAATCGCCGCTTTTCAAACAAAGCGAAACTGCAAGTACACAAAATGAGGCACGCTGGCATTAAGAACTTTGTTTGTCCTCACTGTGGCATGCGTAAAACTACGCGTAACGAACTGCGCACGCATCTCAACTATCATACTTTGAAGCGAATTTGGCCGTGCCGTTTCTGTCCGAAAGAGTTTCACAGTGCCAATAATTTGAAAATGCATATACGCAATATGCATGAACAGGCAAAAGACTTTGCTTGTCGTTTCTGTGAACGCACTTTCGCCAAACCGGACACACGAAAATATCACGAGATGACACATACCGGTGAGAAACCGCACGAATGTAAAGAATGCGGCAAGCGCTTCACGCAGCCAGCTGCTTTACGTACGCATAAAAAAGTACACTTGAAGGAGATTAAACTACAAACAGTTGAACAAAATGTTGCTGGATTGATGACGGAGCAGAATAATACGGAGCCAGAGAAATTAGGTAACGACATGGCCGCCGTATTTTAG
Protein Sequence: MLEIRTNITVNKLREMFIKDFKELQCRTCLSTESKGKGMYQIFETADFAKKLALCCSLEVDPLDLYPQHVCGSCYEKILDFYEFKLMCSNSLQKYKETLNKLQNNAEIKQEDDLQHLLEDEKPLYGLHEKLQLELVEIKSDILLQDNLPIEETTEIEIIRKKKGKTSRKQTVDKIIITTEDTKRSRRVTRLKKKGSKKQIVQSADEEEVRNQKTGKLKEQECVSAVKSSKKTATSKRVYKCDLCEARFFVEHRLIAHKRKHEGLSPYPCTIEGCERSYNRLHNLEQHLKDHKGDRPRRYKCDVENCDRAYKTKSAINMHKRKTHHLGPALKKHICEICGKIFKTSASLNDHRFSHKSEAELPFACEEPNCNRRFSNKAKLQVHKMRHAGIKNFVCPHCGMRKTTRNELRTHLNYHTLKRIWPCRFCPKEFHSANNLKMHIRNMHEQAKDFACRFCERTFAKPDTRKYHEMTHTGEKPHECKECGKRFTQPAALRTHKKVHLKEIKLQTVEQNVAGLMTEQNNTEPEKLGNDMAAVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00750690;
90% Identity: iTF_00750690;
80% Identity: -