Basic Information

Insect: Glossina pallidipes
Gene Symbol: -
Assembly: GCA_000688715.1
Location: Scaffold9:919792-937595[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-07 1.4e-05 25.3 1.9 2 23 156 177 156 177 0.97

2 9 2.6e-07 2e-05 24.9 1.6 1 23 183 205 183 205 0.98

3 9 9.7e-08 7.5e-06 26.2 0.6 1 23 211 233 211 233 0.98

4 9 5.4e-06 0.00041 20.7 0.5 4 23 244 263 239 264 0.92

5 9 5.5e-05 0.0042 17.5 2.9 1 23 269 291 269 291 0.97

6 9 2.7e-05 0.0021 18.5 3.6 1 23 297 320 297 320 0.98

7 9 0.00053 0.041 14.4 2.0 1 23 326 348 326 348 0.98

8 9 7.2e-06 0.00055 20.3 1.2 1 23 353 375 353 375 0.98

9 9 0.0018 0.14 12.8 0.2 3 23 383 406 381 406 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-07	1.4e-05	25.3	1.9	2	23	156	177	156	177	0.97
2	9	2.6e-07	2e-05	24.9	1.6	1	23	183	205	183	205	0.98
3	9	9.7e-08	7.5e-06	26.2	0.6	1	23	211	233	211	233	0.98
4	9	5.4e-06	0.00041	20.7	0.5	4	23	244	263	239	264	0.92
5	9	5.5e-05	0.0042	17.5	2.9	1	23	269	291	269	291	0.97
6	9	2.7e-05	0.0021	18.5	3.6	1	23	297	320	297	320	0.98
7	9	0.00053	0.041	14.4	2.0	1	23	326	348	326	348	0.98
8	9	7.2e-06	0.00055	20.3	1.2	1	23	353	375	353	375	0.98
9	9	0.0018	0.14	12.8	0.2	3	23	383	406	381	406	0.92

Sequence Information

Coding Sequence: ATGGAAAGCATTTGTAGATTGTGTTTCCAACCAGCAGCGTTGTTTCAAGTCCCTGGTTATAATATACCCACCTGTGTTAAGTGCTCCGAACATTTGACCAGTACCGGTAACGGCTTTTATCCAACTGTTACCGGAACGACGGCCACACAAGCGGCAGCAGCCGTAGCTAGTGTAGGTGCAGTGGCCACAGCTGTAGCGGCGGCAGCAGCAGTTAATGCTGCTACTACTAACGGCACAACCACGGCCAGTTTAAATCAGCAGCAACAACAGCAATTACAACAATTGCAAAACGCTGTTAACGAAAATTTACAAAATACCGAAGAAAGCGAAGAGCCGCAGCGTCAAACGCGCCGTCCTCGCCAGAACGGTATTAAAAACAAATTACAACAAATCACCATGTCCTCCTTCGAATTGGAGAAGACCATACAACAATTAGATGTGGATTTAATATTTAATGAAGAGGGCTCTTGCCCTCTGTGCAATAAAACATTTTCTCGTAAATCTTCCCTTTCAACGCACATACGGAATCATGCCATCGAAAGAAAATTTGTGTGCACTTATTGTCATAAAGgatttaCTCAAGCGGCCAATTTAAGAAACCATGAACGCATACACACCAACGATCGTCCCTACGTATGTGGTGATTGTGGTAAAACGTTTACCCAAATCACAAATTTAAATAATCATCGTCGTTTGCATACGGGTGAACGACCTTTCGTATGCATCGAACCGGAATGCGGTCGTTCGTTTGCTCAGGTTACAAATCTCAATAATCATATGAAGACCCACCATAAAGTTCAACAATACTGTTGCAATCAGTGCCCGAAGAAATTTACGCAAGTCACGTCGCTCAATCAACATTTGCAGGCACACGCCGGCATAACCGGGTACTATTGTCCGCGCTGTCCGGAAAAAACCTTTAAACAACAATCGCAACTGCACACTCACATGAAATCGCATGGTCTGGCCTTTCCCTTTGAATGCTCGAAATGTGATGAGAAATTCTTGCAGCAAGCCCATCTGGACCAGCATTTAAAAATGCATGATGAGTTTAAATTCAAATGCAATATATGTCCTAGTTCTTTTAATCAGGAATCGTTGCTGAAAAAACATGAGCAACGTCATTTAGAGGGCAGATACATCGCTTGTCCTGTGCCCAATTGTAATGAGTCGTTTGCTGTACGCCAACATCTCTCCAAACATTTGTTAAATAGTCACTCGCACACAGAGCTGCCGCCGCCAAAACGTTCGAAAAAACCAATAACTCTGCAACCTCCACAACCTCAGCCTGTCACCATGATCGGTCAGCCATTGTCGCTGCAACATGCGCCACAACGTGGTCGTCCTCCtaaaaataaaaataagAATGCTGTTAACAACGTTAGCGGTTTATCTATACCCcagcaattaaatcagcatctgcagcaacagcagcaacagcagcaacaacaacagcaacaattgctacagcaacaacaacagcaacatcagcaacaCTTGGCGTTAGTTAATCAAACGAAAGTGCGTTTTATTCCTAATAATCaaattaaataa
Protein Sequence: MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTSTGNGFYPTVTGTTATQAAAAVASVGAVATAVAAAAAVNAATTNGTTTASLNQQQQQQLQQLQNAVNENLQNTEESEEPQRQTRRPRQNGIKNKLQQITMSSFELEKTIQQLDVDLIFNEEGSCPLCNKTFSRKSSLSTHIRNHAIERKFVCTYCHKGFTQAANLRNHERIHTNDRPYVCGDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPFECSKCDEKFLQQAHLDQHLKMHDEFKFKCNICPSSFNQESLLKKHEQRHLEGRYIACPVPNCNESFAVRQHLSKHLLNSHSHTELPPPKRSKKPITLQPPQPQPVTMIGQPLSLQHAPQRGRPPKNKNKNAVNNVSGLSIPQQLNQHLQQQQQQQQQQQQQLLQQQQQQHQQHLALVNQTKVRFIPNNQIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00748401;
90% Identity: iTF_00748401;
80% Identity: iTF_00746890;