Gpal014337.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- -
- Assembly
- GCA_000688715.1
- Location
- Scaffold105:560586-563343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9 4.6e+02 1.7 0.7 1 14 83 96 83 99 0.83 2 13 5.2 4e+02 1.9 0.6 1 10 175 184 175 196 0.77 3 13 0.28 21 5.9 0.3 1 21 215 235 215 236 0.92 4 13 5.3e-06 0.00041 20.7 0.7 3 23 251 271 249 271 0.98 5 13 4.6e-06 0.00036 20.9 0.3 3 23 294 314 292 314 0.97 6 13 0.0001 0.0077 16.7 0.9 1 23 340 361 340 361 0.98 7 13 0.00042 0.033 14.7 2.2 1 23 367 389 367 389 0.98 8 13 3.1e-05 0.0024 18.3 0.2 1 23 416 438 416 438 0.98 9 13 7.3e-07 5.6e-05 23.4 0.4 3 23 446 466 444 466 0.98 10 13 1.9e-05 0.0015 19.0 3.1 1 23 472 494 472 494 0.99 11 13 6.6e-06 0.00051 20.4 1.8 1 23 500 522 500 522 0.98 12 13 0.0004 0.031 14.8 0.3 1 23 526 548 526 548 0.96 13 13 0.014 1.1 10.0 0.6 2 23 562 584 562 584 0.94
Sequence Information
- Coding Sequence
- ATGACAGAATTCACAGATGAAACAATTAATACACAAATCATTGAAGTCGACGGGAACGAGCACGAGTTCATATCAGAGGATGAAGCTACAAATACAAATCAGAAAGATTCTTTGAGCTGTTTAGTGGAACTCGTCGGTTTAGATACTGAAAGCTTGACTACGGAGAATGAGTTGACAGATGACTTAACCAAGCATAATTTGATATTAAGTGAATGTTTGGACGAAGATGAGCAAATGACTCAAATTTATCACTGCTATCAGTGTAAAACGGAATTTGCAAGCGTGCATGAATTTGTGGAAGCCCATCCTGGTATTGCTGAAGATGAACAGAATTCAGAGAACGTGAAAGAATCCGACCATAAATTTCCAGGAGATATGATGGATAATTTAATAATTATCCGAGATCAAGATACAAACCGAATAGATTACCAAAATGAAGAGATTAATGACGATCGAGAAAGTGAAAGCAATGAATATACAGAAAAAGACGATAAAGATGAAATGACTTTGGATGCGGAACGATATTTTTGTTATGACTGTCAGGAAGTTTTTCTGAATTTGGCAACTGCAGAGCAACATGAATGTTCCTTTGGCATGCAAAACTCTAACCAATCGGTCAATAAAGAACCTGACGAAAAAGATTTTACCTGCGCATATTGCCATCAGTCTTGGGAATCCTATGACGAATTACTAAATCATGTTTTGAAATGCGAGCTAAAGAAAGCAGATGTAATGAGTGATAATTTTGGTTGCGATATATGTGAAAAAGTGTTCACTACTTTGCGTTCTCTCAATGTCCATAAACGCACCCATAAGCATACAAATTCACTTGTTAAGCCTAATAATGGTTTTGCAGCGACTGTGCCCAGTAATGTTATATGTGAAATTTGTAGCACACAGTTTTCGTCACCTAAGAATTTAAAATTACACATGAAAATTCATAATAAGCGTACCGCTAAAACTATACAGGATGCCTTACCAGCTGGTGCTCAAAGCGAATACGGAGAATTGAATTTGTTCTATTGTGAGATATGTAATAAAAGTTTCGATCAAAACTTGCTGGAAATACACAAAAATATGCACCAAAATATTGTAGAATACAACTGCGGGAAATGCAATCGTCATTTCGACACATTGGCCAATTACGATATGCATATGCAAATGCATGCTGAAAACTCCGTAGGGAGGAAAACGTTAACAAAAGTGTTCCAAGAAACAAAGCAAGCAGAGACAGGACGCTCCAAATATCCATGTCAGTATTGCGGGCGAGAGTTTCCACGGCCTTACGAAAAGGTGAAACATGAACGTATACATACAGGGGAAAAGCCGTATGGATGCGAGGTGTGCGGGAAGACATTTCGTGTTTCCTACTCATTAACATTGCACTTAAGAACGCACACGGATATCAGGCCTTATGTATGCACAGTCTGCAATAAACGATTTAAATCGCAGTCCGTGTACGTCCATCATTTGAATACACATGAAACCGAACGTCCTTATAAGTGCGACATTTGTCCCAAAGCATTCCGTACTTCGGTACAACTTTGCGGCCACAAAAATAGTCACAGAAAGCCATTTACTTGCATTGAATGTAATCGCCCTTTTGCAACATTGTATGCCGTCAAAATTCACATGAAGACTCATAGTAATGGTTCAGAGATGTTGAATAAGAGTTCAAAAAATCGTTGTGATATATGCGGTGCGACATATGCTCGCGCGTTTGCTCTGCGTTGTCATCTAAGAGATCAACACGCGACGGATGTGCAAAATTTTCAATTGTCAAACGAAACTGAGACCTCCCCACAAGATCACGATgatttaatagaagatttaatagaagaAAATATAATGACTGGTGGACCGGTTGGGGCTCCAAGAAGTACGGAATTTAGTGAAGTGCAAATTGCTACTAAAACTATTACAAGCTTAAATGATGTTGAAATGAATAAATCTTTATATTAG
- Protein Sequence
- MTEFTDETINTQIIEVDGNEHEFISEDEATNTNQKDSLSCLVELVGLDTESLTTENELTDDLTKHNLILSECLDEDEQMTQIYHCYQCKTEFASVHEFVEAHPGIAEDEQNSENVKESDHKFPGDMMDNLIIIRDQDTNRIDYQNEEINDDRESESNEYTEKDDKDEMTLDAERYFCYDCQEVFLNLATAEQHECSFGMQNSNQSVNKEPDEKDFTCAYCHQSWESYDELLNHVLKCELKKADVMSDNFGCDICEKVFTTLRSLNVHKRTHKHTNSLVKPNNGFAATVPSNVICEICSTQFSSPKNLKLHMKIHNKRTAKTIQDALPAGAQSEYGELNLFYCEICNKSFDQNLLEIHKNMHQNIVEYNCGKCNRHFDTLANYDMHMQMHAENSVGRKTLTKVFQETKQAETGRSKYPCQYCGREFPRPYEKVKHERIHTGEKPYGCEVCGKTFRVSYSLTLHLRTHTDIRPYVCTVCNKRFKSQSVYVHHLNTHETERPYKCDICPKAFRTSVQLCGHKNSHRKPFTCIECNRPFATLYAVKIHMKTHSNGSEMLNKSSKNRCDICGATYARAFALRCHLRDQHATDVQNFQLSNETETSPQDHDDLIEDLIEENIMTGGPVGAPRSTEFSEVQIATKTITSLNDVEMNKSLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746885;
- 90% Identity
- iTF_00746885;
- 80% Identity
- -