Gpal000900.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- su(Hw)
- Assembly
- GCA_000688715.1
- Location
- Scaffold337:112300-117822[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0004 0.03 14.8 1.8 1 20 142 161 142 163 0.94 2 12 3.7e-06 0.00028 21.2 0.4 3 23 214 235 212 235 0.93 3 12 0.077 5.9 7.6 0.2 1 23 241 263 241 263 0.93 4 12 2.2e-06 0.00017 22.0 3.4 1 21 270 290 270 291 0.95 5 12 7.9e-07 6.1e-05 23.3 0.8 2 23 303 324 302 324 0.97 6 12 2e-05 0.0015 18.9 3.0 1 23 335 357 335 357 0.98 7 12 3.7e-05 0.0028 18.1 0.8 1 23 363 385 363 385 0.97 8 12 7.9e-06 0.00061 20.2 1.0 1 23 391 413 391 413 0.99 9 12 2.1e-06 0.00016 22.0 0.4 1 23 419 441 419 441 0.98 10 12 1.7e-05 0.0013 19.2 2.5 1 23 445 467 445 467 0.96 11 12 0.00014 0.011 16.3 3.1 1 23 481 505 481 505 0.92 12 12 1.5 1.1e+02 3.6 0.2 3 23 520 541 518 541 0.93
Sequence Information
- Coding Sequence
- ATGAGTATTAAAGAAGAGAAGAAAGCTTCGCCTTCTTCCAATATGGGAGTAGGCGTTAAAATTCTCAATGATAAGAAGAAGAAAGTACCGTCACTGCCTTTGCAGTTACCCGTTATGACATCGGTACCGTTATCGCCGCCTAAGCAGATCACTTTGTCAATTGCGAAGCCGAAGAAACCTGTGACCAAGGAAAAGAAAATGGATCATTATTTAATGCAGACGATAAAAGGTGaaaaaaaTGCTGAAGGTGTTGAAGGTCCGGAAACTATCGATTTTATATTAACTGATAACAATGAAGATGACGACGGCAACGGAGGGATCACTAAACCAAGTGGTGAGATTACCGAAGAATTACGCTTAACTGATGAGGAAGAACACGATGGTGCACAAGGAGGAAATGAAAAAACTGAAGAAATTGTAGAACATGTGTGCGGCAAATGTTTCAAGACATTCAGACGTTTAAGGGGTTTAAAAAAGCATTTAGATTATTGTCGCTTTGATAGCGGGTATCATTTGCGCAAAGCTGAAATGCTTAAGAATCTGGAGAAAATAGAAAAAGACGCCGTTATCATGGAGAATAAAGACGTTTGCTTTTGTTGCGGCGAAAGCTATGATACTTATCATTTGGGTCATATTAACTGTCCGGACTGTCCCAAATCGTTTAAAACGCAAATGAGCTACGAACGTCACATCTTCATTACTCATTCCGAATTGAATGATCACCCCTGTTCGATTTGCAATGCGAAATTGCGCAGTGCGAACTTGTTGATATTGCATGAGGAACAGCATAAGAATCGCGGCAAACCGTATGCTTGTAAAATTTGTGGTAAAGATTTTACACGTTCCTATCATTTGCATCGTCACCAGAAGTATTCATCTTGCTCGGCTAACGAGAATGACTCAATGAAGTGTAAAGTGTGCGATAAAGCCTTTTATCGTTTGGATAATTTACGAGCTCATCTCAAACAACATTTAGGTACGCATGTCACAAAAAAGCCCGAATACATGTGTCCCATTTGCAAGAATTGTTTCTATAGTTTATCTACACTAAACATTCATACTCGCACTCATACGGGAGAGCGTCCGTTCGATTGTGATTTGTGTGAGAAAAAGTTTCCATCCTTAGTAGCCCTTAAAAAACATCGACGTTATCATACCGGCGAAAAACCTTATACATGCTCTGTGTGTAAGCAATCGTTTGCCGTTAAGGAAGTGCTAAACCGTCATATGAAACGTCATACCGGCGAGAGACCGTATGTTTGCAATGAATGTGGAAAAAGTTTTATACAAGGAGTGCAACTACGTAATCACAGTAAAACTCATTTACGTCCATACGAATGCAACAAATGCCCTGAGAAGTTTAAAACCGAAAAACAATTACAACGCCATTTTAAGGATCATCAAGTTTTAAGTAAGCGCCGTGGCCGATCAAAATATCCTCATAGATGTGAAACATGCAAAGTATCGTTTAAAACTGAAAGTGAATATACCCAGCATATGAAAAAAGGCTCCCATTTAACTCCTGCTCaaaaacgaaaaattaaaaaTCGTACGGATTGCGCGGTTTGTAAACAAGATTTTGACTCGGTGCAGAGTTTACAATTTCATATACTTAAAGTGCATCAGGAAGATCCGGAAAATTTTGTTAATGAAGATCCTTTTCAACGGCCAGCCGTTAGTGTTAGTAATGAATCAAAGGAATGGGAGAGAGAAAATGATGAAGTTCCGCCGCCAGCACCGAAAATCATAAAAATCGAAAGTAACGATGACATACCCCACACTGAGATTATTCGAATCGTAGACACTAGTGTACCAAATCTTTCAGAGAAAGGTAAAGACGATATTGTTTTGTTACCACGAACACATTGGCCTAATAAGGCGTGTTATATTGAGGCAAGTAACGTTTACGCCAACAAGGACCATGATGCTGAACCATCTGAATCACCTAAACTGACCACAAGATATTTATTCGCTGGCATTTGA
- Protein Sequence
- MSIKEEKKASPSSNMGVGVKILNDKKKKVPSLPLQLPVMTSVPLSPPKQITLSIAKPKKPVTKEKKMDHYLMQTIKGEKNAEGVEGPETIDFILTDNNEDDDGNGGITKPSGEITEELRLTDEEEHDGAQGGNEKTEEIVEHVCGKCFKTFRRLRGLKKHLDYCRFDSGYHLRKAEMLKNLEKIEKDAVIMENKDVCFCCGESYDTYHLGHINCPDCPKSFKTQMSYERHIFITHSELNDHPCSICNAKLRSANLLILHEEQHKNRGKPYACKICGKDFTRSYHLHRHQKYSSCSANENDSMKCKVCDKAFYRLDNLRAHLKQHLGTHVTKKPEYMCPICKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPYVCNECGKSFIQGVQLRNHSKTHLRPYECNKCPEKFKTEKQLQRHFKDHQVLSKRRGRSKYPHRCETCKVSFKTESEYTQHMKKGSHLTPAQKRKIKNRTDCAVCKQDFDSVQSLQFHILKVHQEDPENFVNEDPFQRPAVSVSNESKEWERENDEVPPPAPKIIKIESNDDIPHTEIIRIVDTSVPNLSEKGKDDIVLLPRTHWPNKACYIEASNVYANKDHDAEPSESPKLTTRYLFAGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -