Basic Information

Insect: Glossina pallidipes
Gene Symbol: -
Assembly: GCA_000688715.1
Location: Scaffold78:426858-442374[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.6 1.2e+02 3.5 0.2 3 23 454 475 452 475 0.92

2 18 0.64 49 4.7 0.2 6 23 484 501 484 501 0.98

3 18 0.0013 0.098 13.2 0.9 1 23 507 529 507 529 0.99

4 18 0.00061 0.047 14.2 1.2 1 23 540 562 540 562 0.97

5 18 0.19 14 6.4 0.3 1 23 570 591 570 591 0.79

6 18 6e-05 0.0046 17.4 0.2 2 23 598 619 597 619 0.97

7 18 0.022 1.7 9.3 0.2 3 23 629 650 627 650 0.94

8 18 0.0085 0.66 10.6 0.0 1 23 658 681 658 681 0.96

9 18 1.5 1.2e+02 3.6 0.1 1 8 687 694 687 700 0.88

10 18 0.097 7.5 7.3 1.2 2 23 1003 1025 1002 1025 0.96

11 18 0.0021 0.16 12.6 0.3 1 23 1057 1079 1057 1079 0.98

12 18 0.00069 0.053 14.1 0.2 1 23 1087 1109 1087 1109 0.97

13 18 4.7e-07 3.6e-05 24.0 0.3 1 23 1117 1140 1117 1140 0.97

14 18 0.00041 0.031 14.8 0.2 2 23 1147 1168 1146 1168 0.96

15 18 0.0098 0.75 10.5 0.1 2 23 1177 1199 1176 1199 0.95

16 18 0.0003 0.023 15.2 0.1 2 23 1208 1230 1207 1230 0.94

17 18 3.1e-06 0.00024 21.5 2.7 1 23 1236 1258 1236 1258 0.98

18 18 3.7e-05 0.0028 18.1 1.2 1 23 1264 1287 1264 1287 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.6	1.2e+02	3.5	0.2	3	23	454	475	452	475	0.92
2	18	0.64	49	4.7	0.2	6	23	484	501	484	501	0.98
3	18	0.0013	0.098	13.2	0.9	1	23	507	529	507	529	0.99
4	18	0.00061	0.047	14.2	1.2	1	23	540	562	540	562	0.97
5	18	0.19	14	6.4	0.3	1	23	570	591	570	591	0.79
6	18	6e-05	0.0046	17.4	0.2	2	23	598	619	597	619	0.97
7	18	0.022	1.7	9.3	0.2	3	23	629	650	627	650	0.94
8	18	0.0085	0.66	10.6	0.0	1	23	658	681	658	681	0.96
9	18	1.5	1.2e+02	3.6	0.1	1	8	687	694	687	700	0.88
10	18	0.097	7.5	7.3	1.2	2	23	1003	1025	1002	1025	0.96
11	18	0.0021	0.16	12.6	0.3	1	23	1057	1079	1057	1079	0.98
12	18	0.00069	0.053	14.1	0.2	1	23	1087	1109	1087	1109	0.97
13	18	4.7e-07	3.6e-05	24.0	0.3	1	23	1117	1140	1117	1140	0.97
14	18	0.00041	0.031	14.8	0.2	2	23	1147	1168	1146	1168	0.96
15	18	0.0098	0.75	10.5	0.1	2	23	1177	1199	1176	1199	0.95
16	18	0.0003	0.023	15.2	0.1	2	23	1208	1230	1207	1230	0.94
17	18	3.1e-06	0.00024	21.5	2.7	1	23	1236	1258	1236	1258	0.98
18	18	3.7e-05	0.0028	18.1	1.2	1	23	1264	1287	1264	1287	0.97

Sequence Information

Coding Sequence: ATGGATAAGTGTTTACTTTGTTTCGAAACCGATTTGGAATTTGAGCCAAACATCAAGGTGGACTCAAGACAATGGAAGGAATTAAATATAGAATATATTATAGAAAAACATTTATGGCCAATAAACAATATTCAGTCCTACCAATGGATGTGTCATACGTGTTGGAAAGAGTTACATGATTTTCATAAGTTCTATACACGCCTGGAAACTGTTCGTGTAAGTCTACTTAAGGTTAATTCAGAAAATATAAAATTAGAGACATCGCGTAATGGATCACCCTCACTAGCACCTCTGCCAGCGGAACAAACTGAGCAAATGGTCTCCGAAACTAAAGAAATTGATAAAGAAGCTTTATTTGAAGATAGCTTAGAAACGGAAATGTTAATAAATCCAATACCCACTTGTGAATTAATTATTGAAGAAAATAAATTACCTATCGATGAAACTTTGTCGGATACTGAACCGATTGTACAAAAGAAGCGTAGGGGTCGACCACGAAAACAGCAAAGTGCGGAGAGTTGCTCACaaaaagtaaaaaagaaggtcaaaatattgaaacgccaaggtctaaaaagaaagcgaaaaaaTGATTCTCCTTCCCGTACAATTGTTGGTAAAACAAGCATCACATCTGATAAAATTATTGAGGTAAAGCCAGAAATCAAGGAAGAACCTGAACTGTTAATAACGAACACAGAACCTAAATTAAACGTGGATGTACTGAGTAATAACGGTCCATCTGGCAATTCCCTAGAAGTAACGGAAACGCCAATAAATCCACTCTCTCCACCCTATCGATTACCAAATGAAGAGGAAATAAAATCTAAAGCGCAGGAATCTATGCAAAAAGGTTCCGTTTTGCCGCGGAGGCCAAGAGGACGTCCTCGTAAAAAACCAGAGGTTAGAGAATTTTTGAAAAATGAAATGAAACGAACTAGCACATTGAAAACAAAAGTAAATGGTGAGAATGGCGATCTCACAGAGTCGAACTCAAATAACAACATCGAACCTGAAAAAAAACCTTCTTCTTCAAGCGTAAGATCCAAGAGACCTTGGTTATCCAGAGATCCAGAGCTATCGCCTGCTTCTGAAATAACAAAAAACGTTCCTGAGCCGGAAATCACCGCGAATCTCGAATTAAAGCTAATATATACATCGAAACTAGCTATTCAATCAGAAAATTTAGAAGAAGCATTGACTGATCATTCTAATATTGATTCCTATTCAGTTTGTAGTCCAGCCAATGATACCGATTCTACGACACATAAAAAGAAGGGaaaaaaaTGTGTTTCTAGTCGAAGCAAAAAATTGGAGCCAAATCAAATTGAACAATTTATAACCGATAACATAAAAATTATCTGCGCTGTGTGCGACGAACCTCAAGCAAATTTTAGCAAATTACAACGCCACTCTCAAAAGCAACATCAAAAACGCGGTTATGTCTTATGTTGCGAAAAGAAATTCATTAAACGCGCGTTCCTTGTTGATCACATAAACCAACATCTTAATCCAGATCATTTCAAATGTGAACAGTGCGGGAAGATAATGGGTAACCGACGATCAATGAAATCACACATAAGAATGCACGAGATTTATGACGGCAAACGGGAGAAGCTACATAAATGTCATATATGCGGTAAAGCTTTTGCTGCTCGAATAGTAATGAAAACTCACATGTTGATACATATTCCGGAAGAGGAAAGAAAATTTCGATGTACGGAATGTGGGAAAAGTAGTCAACTATTGCTTAATAACCATTTGCAAGGTGTGCATCTGCACAAATATGCAAAGGTCTGCGAGATTTGCGGTAAAACGATACGATCAAGTATAGCCTTTGAACGTCACATGCGAGAACACACCGGCCAACCTCCGCCCGAAATTAATTGCGATATCTGTGGACTTAAACTAGCCAGTCTACGGGGATTAAAACGTCACAAGATACGCCAACATCCACAGGGTGGaaaaaaaGGATTTGAGTGTCCAATATGCCCAAAAGTGCCACCGAATCTCAATGCTCTGAAAGAACATATAAAATATACTCATGAAACAGGATTTGATCATAAATGTACAATTTGCGGCAAAGATCTAGTTCCACAAGCGACCAGTGAAATGGATAAGTGTTTACTTTGTTTGGAAACGAATTTTGAATTTGAGCTAAACATCAAGGTGGATTCAACACAATGGAAAGAACTAGATGTAGAGAGTGTTATAGAAAAACATTTATGGCCCATAAGCAATATTGAATCCTACCAATGGATGTGTCATATTTGTTGGAAAGAGTTATATGATTTTGATAAGTTCTATTCACGCCTTGAAAACGCTCATGCCAATTTGCTTACTGTTAATTCAGAAAATATAAAATTGGAGACATCACATAATGGATCACCCGTACTAGAGCAAATGTTCCACGAAACCAAAGGTATTGATAAGGAAGCTTTATTTGAAGATAGCCTAGAAACGGAAATGTTAATAAACCCATCAATACCCAACTGTGAATTAATTATTGAAGAAAATAAATTACCTATCGATGAAACTTTGTCGGATACTGAACCGATTGTACAAAAGAAGCGTAGGGGTCGACCACGGAAGCAGCAAGATGCGGAAAGCTGTCTACCGaaaggaaaaaaaaaggtaaaaatagtaaaacgccaaggtgtaaaacgaaagcaaaaagATAATATCCCTTCCCGCATAACGGCTGGTAAAACGATCGTAGCATCTGATAAGAGTTTTGAGATAAAGCCAGAAATCAAGGAAGAACCTGAACTCTTAATAACAAATTTAGAACTTAAACAAAGCGCAGATTTGATAGATTACTCGTTTAATGATCATTCGAACACCGATTACGATTCTGATTACAATCCTTCAGATACTCAAAATATTGCTTCACCTGATGCTAACTGCGAAGAGGTTAAGCGCTCGAATAGCAAACGCTCTCGCTCTCTAAGCTATCGAACAACTAAACAAAACGAAAGCGACAAATTTATTGCTGAAAATTTTAAAATCACTTGCGGTGTATGTCAGGAACCATTGGAAAATTTTAACGAACTGCAACGACATTTTAGAAAATGCCATCAAAGGCGCGCGTACGTGTTATGTTGCAAGAAAAAATTATTCAAACGCAGCTATCTTGTTGATCATATACATCAACATCTAGATCCAAATTACTTCAAATGTGAACAATGCGGTAAAGTAATGGGCAATCGACGTTCTCTAGAATTGCATGCGAAAATGCACGAAAGTAATCGGGAGAAAATACACAAATGTCCTGTATGCGGAAAAGCATTCGCTGCTTGGAAAGTTATGCGAACGCATACATTAATACATATCCCCGAAGAAGAGAGGAAATTTCGGTGTGGTGAATGCGGAAAAAGTTTTGGTGATCAATATTTACTTAATAATCACATACGAAATGTTCACTTAAATAAGTATGCGAAGGTATGCGATATATGCGGAAAATCTATAAGGAGCAGCGATGTCTTTGAACGTCATATGTTAGAACACACGGGGCAACCACCGCCGGAAGTAAGCTGTGACATCTGCGGCCTTAAATTAAGCGGGCCACGGGGCTTGAAACGTCATAAGATGATTCAACATCCTGAAGGTGGTAAACAAGAATCAGTTTGCCCAATATGTTCGAAGGTATCACCGAATCCATTCGCTCTGAAAAGACATATCAAATTTAACCATGAAATGGCTAACAATCATAAATGCACTATTTGTGAAAAGGCTTTCAAACGGCAGACAACGCTAATCGAACATATGACTACACATACAGGCGATGTTCTTTATATTTGTACCTGGTGTCCAAAAACTTTCAACTCTAATGCGAACATGCATGCTCATCGCAAACGTGCGCATCCTAAAGAATGGGCAGAACATCACCgcaaaaaatatgcagacaacttcgcccttagtttcctgccaacagacccaaatactacggaggagttgcaaaaaAGAACCATAAAGAAAATATCTTGGATATGTAGGAGTCGCTGGAACGCAATATACCGTTTTCACAATTTCTGTAAGCGAATAGACAAAATTCTTAAAAGCAGTGACTTTGGTTTACTTTCGTCTAATGCAGCAAAGTTCCAGATTGTCGAAGAAGAGGGGCCCTTTCCTAATATAATAGATAATTTAACTGGCAGCAATATTCAGGAATGTAAAGAAGACTTTAATAAACACGTTTCGATTGACACTATTCCAGAAGAAAAAGTGATGACGTATTCATTGCACAGAACATTACCATTGTTCTTGCTGTTAGTATTGCCAAAAATGACAAATGACCCCAAGACAAAGAAAGAACTGGAAAATATTTCATTCCCCAAAATTAACGACGACTTGCCAGAAATTAGCGAAATAATAACGTCGTTCTTTACTGGCGCGAAACGTCCAGAAAATCCAAAACCCAGCACTTCCAATAAGCAGAACaaaaaaaGAAATTAA
Protein Sequence: MDKCLLCFETDLEFEPNIKVDSRQWKELNIEYIIEKHLWPINNIQSYQWMCHTCWKELHDFHKFYTRLETVRVSLLKVNSENIKLETSRNGSPSLAPLPAEQTEQMVSETKEIDKEALFEDSLETEMLINPIPTCELIIEENKLPIDETLSDTEPIVQKKRRGRPRKQQSAESCSQKVKKKVKILKRQGLKRKRKNDSPSRTIVGKTSITSDKIIEVKPEIKEEPELLITNTEPKLNVDVLSNNGPSGNSLEVTETPINPLSPPYRLPNEEEIKSKAQESMQKGSVLPRRPRGRPRKKPEVREFLKNEMKRTSTLKTKVNGENGDLTESNSNNNIEPEKKPSSSSVRSKRPWLSRDPELSPASEITKNVPEPEITANLELKLIYTSKLAIQSENLEEALTDHSNIDSYSVCSPANDTDSTTHKKKGKKCVSSRSKKLEPNQIEQFITDNIKIICAVCDEPQANFSKLQRHSQKQHQKRGYVLCCEKKFIKRAFLVDHINQHLNPDHFKCEQCGKIMGNRRSMKSHIRMHEIYDGKREKLHKCHICGKAFAARIVMKTHMLIHIPEEERKFRCTECGKSSQLLLNNHLQGVHLHKYAKVCEICGKTIRSSIAFERHMREHTGQPPPEINCDICGLKLASLRGLKRHKIRQHPQGGKKGFECPICPKVPPNLNALKEHIKYTHETGFDHKCTICGKDLVPQATSEMDKCLLCLETNFEFELNIKVDSTQWKELDVESVIEKHLWPISNIESYQWMCHICWKELYDFDKFYSRLENAHANLLTVNSENIKLETSHNGSPVLEQMFHETKGIDKEALFEDSLETEMLINPSIPNCELIIEENKLPIDETLSDTEPIVQKKRRGRPRKQQDAESCLPKGKKKVKIVKRQGVKRKQKDNIPSRITAGKTIVASDKSFEIKPEIKEEPELLITNLELKQSADLIDYSFNDHSNTDYDSDYNPSDTQNIASPDANCEEVKRSNSKRSRSLSYRTTKQNESDKFIAENFKITCGVCQEPLENFNELQRHFRKCHQRRAYVLCCKKKLFKRSYLVDHIHQHLDPNYFKCEQCGKVMGNRRSLELHAKMHESNREKIHKCPVCGKAFAAWKVMRTHTLIHIPEEERKFRCGECGKSFGDQYLLNNHIRNVHLNKYAKVCDICGKSIRSSDVFERHMLEHTGQPPPEVSCDICGLKLSGPRGLKRHKMIQHPEGGKQESVCPICSKVSPNPFALKRHIKFNHEMANNHKCTICEKAFKRQTTLIEHMTTHTGDVLYICTWCPKTFNSNANMHAHRKRAHPKEWAEHHRKKYADNFALSFLPTDPNTTEELQKRTIKKISWICRSRWNAIYRFHNFCKRIDKILKSSDFGLLSSNAAKFQIVEEEGPFPNIIDNLTGSNIQECKEDFNKHVSIDTIPEEKVMTYSLHRTLPLFLLLVLPKMTNDPKTKKELENISFPKINDDLPEISEIITSFFTGAKRPENPKPSTSNKQNKKRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -