Gpal012655.1
Basic Information
- Insect
- Glossina pallidipes
- Gene Symbol
- RpL30
- Assembly
- GCA_000688715.1
- Location
- Scaffold111:417527-430954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.023 1.8 9.3 0.1 2 23 290 312 289 312 0.94 2 19 0.12 8.9 7.1 3.5 6 23 322 339 316 339 0.96 3 19 8.7e-05 0.0067 16.9 2.7 1 23 345 368 345 368 0.97 4 19 0.00012 0.009 16.5 1.4 1 23 377 399 377 399 0.98 5 19 0.00096 0.074 13.6 0.5 1 23 406 429 406 429 0.96 6 19 0.00015 0.012 16.1 1.1 2 23 434 455 433 455 0.95 7 19 0.3 23 5.8 0.5 2 23 464 486 463 486 0.90 8 19 0.083 6.4 7.5 0.6 1 23 493 516 493 516 0.89 9 19 0.0001 0.0079 16.7 0.0 1 23 522 544 522 544 0.97 10 19 2e-05 0.0016 18.9 6.2 1 23 550 573 550 573 0.98 11 19 1.4 1.1e+02 3.7 0.2 3 23 982 1003 980 1003 0.92 12 19 3.1e-06 0.00024 21.4 4.8 1 23 1036 1059 1036 1059 0.97 13 19 0.00078 0.06 13.9 1.0 1 23 1068 1090 1068 1090 0.97 14 19 6.4e-05 0.0049 17.3 0.4 1 23 1097 1120 1097 1120 0.97 15 19 0.018 1.4 9.6 2.1 2 23 1125 1146 1124 1146 0.95 16 19 0.039 3 8.6 2.0 1 23 1154 1177 1154 1178 0.94 17 19 0.016 1.2 9.8 0.0 1 23 1184 1207 1184 1207 0.95 18 19 0.00022 0.017 15.6 0.1 1 23 1213 1235 1213 1235 0.97 19 19 0.00014 0.011 16.2 8.1 1 23 1241 1264 1241 1264 0.98
Sequence Information
- Coding Sequence
- atGTCTATATGCCAACTATGTGCGGGAAGTTGCGAAGAATGTAGGAACTTATATGACGAGCATGGACAAGGCACAGAAGTTTACGATATTACAGTCAAATATTTTGATCCAATGTTATTGAGCTCAAATATGGACCACGACAGTAGAGTTATATGTGGTAAGTGCTGGCGCCATATCAGTGAATTTTATGACTTTCAACGTTCGGTACTAACAATTCAAAATAAATTGGAAACTGAATCTAAGCATTTGATACCCTTGATTAAACTTGAGGACGAAATCTTATTGGATCAAGAATTTCTCCCGAAAAATGAGTGTGAGCTCTCGTTGAACGATGTACTGGACGGTGAATTCCTTAATATACGAGGGGATGATATCTTAAATGATACTGaaaaaaaTCAGCCCACTAATTCTGAAGACGAGAAACCCTTGATAATACGCGCAAAACGTAAAAGTAGGACAAATTCTGAGAATATTaaaaagtgcagtgctaaaaagaaaatttgcaaaaaaaccccttcaaaaaGACGGCAACAACGTACTGAGGCAGTGaaaaaaaGTAAAAGGACAATCGGAACAATTGGAACAATAGATAAAAATTATTATAACAATCCAGATAACAATGaaaaaaaaTTCCTCAATACTGAAAATGTAACGAACCCAAACCACAATATTGAGATGACTAAGAAAAGTAAAATGGACATGGATTTAAGCTTTCAGACATCAAATGAAATACCCAATAACATCGAGAATACATCCTCAAATTATGATAGTGAGGATAACAGAGCTGCTTCGACCGACGGGCAACAGTCACATTTCAATAGGTCGCAAGATTATGATGCTTTTATTTCGGAATGGAAACAAGACTTAAGCTGCGTCGTGTGCAATGCCGAGTTTGCAACCTTAGCTTTACTGCGTTCTCATTTCAGACAAGAGCATCCAAATGACAAATGTTACGTACTATGTTGCCAGCGCAAGTTCTTTCATCGTTATCAACTAGTAGAACATATACGAGTACACATTAAGCCCGATATTTTCAAATGTGAAGTGTGTGGAAAATGTGCTCCGCATAGTCGAGGTTTAAGGAAACACATAAGGGAAAGGCATACGAAAGAAGGACAGGAGCGGCAGTATGAATGCAATGTTTGCCACAAGCGTTTCACCAAAAAACCTATACTTAAAGCACATATGGAAATCCATGTTACAGGCAGTAAAGATCACATTTGCAAGGAGTGTGGTAAAGGTTTCGTACTAGAAACACGCCTTAAAGCTCACGAACGTTCTGTTCATAACATAGCCTGCGTATGTGATCAATGTGGGAAAACGGTGCGGGGAAAGTACGCACTTAAAAGGCATTTATTGGAACACGCTGGCGTTACGAAACGTAAATGGACTTGCGATCAATGTGAAGCCCAACTAAATTCTCATTATGCTTTGAAAAGGCATAAAGAAGCCATACATCACGATGGTACAACGGTATACGTGTGCAAGGATTGTGGAAAAATTGCACCATCCGCTCAAGCATTACGCTGCCACAAAAAATATGTTCATCAAGCGGAGCGTAAGTACAAATGTAGCATATGCGATAAAGCGTTTAAGGTAGCAATTGTGTTAAAAGAGCATATGGCTGCACATACAGGTGAGGACCTATATCAATGTCCATATTGTCCAAAAACATTTAAAGTAAGTTCAAATATGCATCATCATCGAAAGAAATCCCATCCGATAGAATGGGCTGAAGCAAGACAAAATAAACAACAAACAAACAAAGTTGATGTTAATTTAGTTTCAAATGAAAAAAAAGCCCTAGAATCGACCAATGCTCGCTTGGCTTTGGTTATGAAATCAGGCAAATATTGTCTGGGATATAAGCAAACATTAAAAACTTTACGTCAAGGCAAAGCTAAATTGGTATTGATCGCCAGTAATACGCCAGCGTTGAGAAAATCGGAAATTGAATATTACGCGATGTTGGCCAAAACTGAGGTGCAACATTATATTGGTACAAATATCGAATTAGGTACTGCATGCGGCAAATACTTTCGTGTATGTACCATGTCTATCACAGATCCCGGCGACTCTGACATTATTCGATGTTGGAACGATAGGGGGAGTATAGTTTCCAATCGATTTCATGAACGTCGCGTACAATTATGCCTTACAAAGACCAATGATTTTAAGCATCTGTGTGATGAAAATGGAGAGGATAGCGAAATATACCATATTACCGTCAAATATTTTGATCCCATGATGCTATTAAGCTCGACTTCTGCACAGGATTGTAAAGTTATATGTGATAATTGTTGGCATCATATTAGTGAATTCTATGAGTTTCAACGTTCGGTGTTAGTGATTCAAACGAAACTGGAGGATGAGCTGAAGCCTTTAGTTAAACTCGAAAATGAAATTTTACTAAGTCAAGAAACTCATCCGAATAATGAATACAGTTTGCCCTTCAATGATATAATGGAGAATGAGTTGCTTGCTGTCGATGTTGATAATTCCAATCATGTGAAAGTGCTTGGGACGATTAGTACTGATGATGAAAAACCTTTGCTATTACGCACTAATTTAAGGCCaaaaagaaaatttaaaatcgataaaactacaaccaagcaaaaatcggccaaggcaatggcaaaaaTTTGTAAAAGTTCCAGAAGTGTGAAGAAAATTAAAACAACTGAAAAAACTAGAATCAATAAGAAAGGTAATTCGAACGGTTTAATAAATGCAGAAAAAGAATCTACGAAACCAGAAAATCAAACTGATTTTATCGATAAAGAAATCTTAGATTTACATGAAGTAATGCATAATGTTGACAATGCTTCTTCGAATTATGATAGCGATGATAATCGATTGGTTTCAAACGAAGAACAAGAAAAGCGTTTAAAGAAATCTCAACGGTATGATGCATTTATTGCTGAATGGAAACGAAACTTGGACTGTCCTGAATGCAGTGATACCTTTTTAGATCTAAGCTTATTACGTGTACATTTCAAAGAAAAGCATCCAAAGCAAAAATGTTACGTCTTATGTTGTCAGCGTAAGTTGTATTTCCGCCGTCAAATGGTTGAGCATATACGTCTGCACATCGATCCAAGTATTTTTAAGTGTGAATTATGTGGCAAGTGTTTTACACAAAGTCGAAGTGTaaaaaaaCATATGCGTGAAAAACATACTGAAGAAGGACAGGAGAGACGATTTGAATGTAATATATGCCACAAACGTTTTGCCAAAAAAGCTATACTTAAAGGTCATATGGATATACATGCTACTGGCAGCAAAGATCACGTTTGCAAAGAATGTGGTAAGGGGTTTGTTCTCGCATCCCGACTTAGAATACATGAACGTACAGTTCATAATGTTGATTGCGTTTGTGATCAATGTGGAAAGACGATTCATGGTAAATATGCTTTAAAACAGCATTTATTGGAGCACGCTGGAATAATGAGACGTAAATATCCATGTGATCAATGTGAAGCTCAGTTGAATTCACATTCCAGTCTAAAAAGACATAAACAGGCCGTTCATCATGACGGCACAACGGTGTATGTGTGCAATGAATGTGGAAAAATTGCACCATCCGAACCTGCTCTGCTTAGCCATAAAAAGTACGTGCATCAAGCGGAGCGTAAGTATAAATGTAGTATATGTGATAAAGCCTTTAAAGTTGCACTTGTATTGAAGGAGCATATGGCGGCTCATACGGGCCAAGACCTGTATCAGTGTCCCCATTGCTCTAAAACATTTAAAGTCAGCTCAAATATGCATCACCATCGGAAAAAAGCCCATCCTGTCGAATGGGCAGAAGCAAGACGCAATAAACCACAAACTAGCAAAATCGATGTTAATTTAGTTTCAAATGAATATTCTTATGATTATATATAG
- Protein Sequence
- MSICQLCAGSCEECRNLYDEHGQGTEVYDITVKYFDPMLLSSNMDHDSRVICGKCWRHISEFYDFQRSVLTIQNKLETESKHLIPLIKLEDEILLDQEFLPKNECELSLNDVLDGEFLNIRGDDILNDTEKNQPTNSEDEKPLIIRAKRKSRTNSENIKKCSAKKKICKKTPSKRRQQRTEAVKKSKRTIGTIGTIDKNYYNNPDNNEKKFLNTENVTNPNHNIEMTKKSKMDMDLSFQTSNEIPNNIENTSSNYDSEDNRAASTDGQQSHFNRSQDYDAFISEWKQDLSCVVCNAEFATLALLRSHFRQEHPNDKCYVLCCQRKFFHRYQLVEHIRVHIKPDIFKCEVCGKCAPHSRGLRKHIRERHTKEGQERQYECNVCHKRFTKKPILKAHMEIHVTGSKDHICKECGKGFVLETRLKAHERSVHNIACVCDQCGKTVRGKYALKRHLLEHAGVTKRKWTCDQCEAQLNSHYALKRHKEAIHHDGTTVYVCKDCGKIAPSAQALRCHKKYVHQAERKYKCSICDKAFKVAIVLKEHMAAHTGEDLYQCPYCPKTFKVSSNMHHHRKKSHPIEWAEARQNKQQTNKVDVNLVSNEKKALESTNARLALVMKSGKYCLGYKQTLKTLRQGKAKLVLIASNTPALRKSEIEYYAMLAKTEVQHYIGTNIELGTACGKYFRVCTMSITDPGDSDIIRCWNDRGSIVSNRFHERRVQLCLTKTNDFKHLCDENGEDSEIYHITVKYFDPMMLLSSTSAQDCKVICDNCWHHISEFYEFQRSVLVIQTKLEDELKPLVKLENEILLSQETHPNNEYSLPFNDIMENELLAVDVDNSNHVKVLGTISTDDEKPLLLRTNLRPKRKFKIDKTTTKQKSAKAMAKICKSSRSVKKIKTTEKTRINKKGNSNGLINAEKESTKPENQTDFIDKEILDLHEVMHNVDNASSNYDSDDNRLVSNEEQEKRLKKSQRYDAFIAEWKRNLDCPECSDTFLDLSLLRVHFKEKHPKQKCYVLCCQRKLYFRRQMVEHIRLHIDPSIFKCELCGKCFTQSRSVKKHMREKHTEEGQERRFECNICHKRFAKKAILKGHMDIHATGSKDHVCKECGKGFVLASRLRIHERTVHNVDCVCDQCGKTIHGKYALKQHLLEHAGIMRRKYPCDQCEAQLNSHSSLKRHKQAVHHDGTTVYVCNECGKIAPSEPALLSHKKYVHQAERKYKCSICDKAFKVALVLKEHMAAHTGQDLYQCPHCSKTFKVSSNMHHHRKKAHPVEWAEARRNKPQTSKIDVNLVSNEYSYDYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -