Gpal004808.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossina pallidipes
Gene Symbol
-
Assembly
GCA_000688715.1
Location
Scaffold107:903870-910596[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 8.6 6.6e+02 1.2 0.8 1 18 61 78 61 78 0.85
2 14 0.059 4.5 8.0 2.3 1 23 122 145 122 145 0.95
3 14 0.00012 0.0089 16.5 0.9 2 23 152 174 152 174 0.97
4 14 8.8e-06 0.00068 20.0 6.5 1 21 183 203 183 206 0.96
5 14 3e-05 0.0023 18.4 4.6 2 23 467 488 467 488 0.97
6 14 2.5e-06 0.00019 21.7 6.0 1 23 494 517 494 517 0.95
7 14 0.002 0.15 12.6 5.8 1 23 522 545 522 545 0.97
8 14 1e-05 0.00079 19.8 2.0 1 23 555 577 555 577 0.97
9 14 1.7e-06 0.00013 22.2 2.2 1 23 582 605 582 605 0.98
10 14 2.9e-05 0.0022 18.4 0.8 1 23 611 633 611 633 0.96
11 14 8.9e-05 0.0068 16.9 1.9 1 23 639 661 639 661 0.98
12 14 4.6e-07 3.5e-05 24.1 1.6 3 23 669 689 668 689 0.99
13 14 4.1e-07 3.2e-05 24.2 0.4 1 23 695 717 695 717 0.99
14 14 0.0026 0.2 12.3 0.0 1 23 722 745 722 745 0.95

Sequence Information

Coding Sequence
ATGGATATTAAAGTGCAACCTAATCACAATATCATATGTCGGATATGTTTGCAGGAGAACATTAATTTATATCCTATTGAGGACCAAGTTCAAGTTCTTGAGGATAGAATAGCTACGTTGGCTGAAATTATAACAGAATGCACAAAATATCCAGTGTTGGATAGCGATCAGTTGCCCACGCACATCTGTAATGTTTGTAAGGAGGCGGCACGCACAGCATACTGCTTTAAAAGGCAAACAGAAAAAGCATATTGTCGTTTAAAAGCCTACTACGACAAAACATGGATGCCGAAGGATGAAAAACGGATTTCTAAAGCTCCAAGCACACGCGAACAATTTACCCAAACGGAACACAAGAATTGTCATCAATGTGAATCGTGTCCAAGAAAATTTTTTAAGGGACGAGAACTGCGCGAACATAGAATGCAGGAACATAGCAACGATAATGGCCGTAAGTGCCGCGTTTGCGGCGAGAAATTTATACATTTGGGTCAATTGAAAGTTCACCTATCCACTGAACATCCCAATGAAGGTATACATTGCGACTTCAAATGTAGTACTTGTTCGAAAGTATTTTCGCGTAAAGATCATCTGAAACGGCATTTACGTTGCGTACACAAATACGAGTTGGAAGACGATAAAATTAATAATAGCGTTCAGTTAACTCTCGATGAACCAGAAATTGAGTTTGAAAAGCAAGTGAATCCGACAAACAGTACCACTGCTATTACTGCTACTACTTTGATAGGAGTTGATACTGATACTAATTTAAACAATCACAGCAGCCATTGGTTGGACTATGAGGATGAGGAGGAAGCTTTACCTCAAGTAAGTGATGAACAACACGCTAGCGTGGCTGCAGTTAATCCATTCTCTAGCGATGACGATGAAGAAAATGTGTACCAGATaaaaaaaTGTGATAGCTTAAGCAGCGAGGAACAAGAAGATATCAAAGAGTTTGCGGAATATGTAGTACAGCCCGAGATATCAATAAAAGTGGAAAATACGGAAGACAGTTTTAATTTTAATGAATTCGTGAAAGAAATCGACGCACCGAGAGAAAAACGTTTAATAACAACAATAGCAAGTCTAACAGATTTAAAACATGAAAAACCTCTTTCCGAGGACGAAGTGCAAGAAGAAAACCAGCAACACTTGGGTGATGAGAACAATGATCACGATTGTGGACCAATTTCTGATACTGAAAATATGGTTGAAGAGAATTCTAATAATGATAAGAAAGTTTTAAAATCAACGAAAAACTTAAGAGCTTTTAAAACAATGAAGAAAGAGGCGAAAGAGACTGAAAAAAGTATACGTAAAAATAATAATTTTGTTAGCAACGTGAAGGGCCACACCACGCGACGACGTTACGGTGCATCCAAGAATGAAGAAAATCGTTGCTTACAATGCAATCGAACTTTTTCACGTTACAATCATTTATTACGTCACATGTTAACACACAGCGATGAAAAACCGCATGTATGCTGTTATTGCGGTAAGCGTTTCTCGCGTAGCGATCATCTACAAAAGCATATCGCCAGTCTGCACACTGAAAAACAATTCAAATGTGATCAGTGTTCATGTGCCTATGGACGCAAAGACCATTTGCAGCGTCATAAAGAAACACGTCATGGTAACAATCCGCCCCCACCCAAACTATTTGAGTGCGATATGTGTGAGAAGAAATTTACAACAAAAGCATATCTGATGAAGCACAAACAATTGCATGGAGCTAGACTGTATGTCTGCAAGCACTGTCCTGAAACATTTAACGATAAAGACCTACTTAAGGAACATCAAAAGAAAATGCATACGCAACCGCGAAATTTCCTATGCAGTATATGCGGCGACAGTTTTCAACGTAATGAATACCTTAAAATACATATGCGTAGGCACACCGGCGAAAAACCTTATAAATGTCGTTTTTGCGAAAAAGGTTTCCCGCGCAGCACTGACTTAAAAATGCATGAAAGATATCATATCGGCATTAAGCCAAATTTGTGTAATCTGTGTGGCAAAGGTTTTCATCGGCCTTACAATCTCACCATACACATGCGTACGCACACTGGCGAAAAACCATACAAATGCACTCAATGTCCTCAAGCATTTGCGCAAAGTAATGATTTAAAAGCACATATACGCCGTCATACGGGTGAACGGTTTCGTTGTGACGTCTGCGGGGCAGCGTTTCTGCAGCGCTACGGATTAAAGGCTCATGTTAAAGCGGCACACGGGATAATAATGACTTCGTTCACGGGACGTTTGCAGAAAGTGCAATTGCCTGCTGAATTGGCGCAACAAATTCTAGAATCGCCATCacaacaacaaccacaacaacaacaacaacaaGTAAACGTCGTACAAACCACCCCATCACCAAGTTCGATGCAATCCTCATGTGCTGCTAATGCTGTGTCACAGCAGTACAGTCTAAACCCAATACTTATGCAAACGAATTCCTTAATTGAAGCCAACACCACGTTAGTCTTATCAGCCACTCAGATGTCACTGTAA
Protein Sequence
MDIKVQPNHNIICRICLQENINLYPIEDQVQVLEDRIATLAEIITECTKYPVLDSDQLPTHICNVCKEAARTAYCFKRQTEKAYCRLKAYYDKTWMPKDEKRISKAPSTREQFTQTEHKNCHQCESCPRKFFKGRELREHRMQEHSNDNGRKCRVCGEKFIHLGQLKVHLSTEHPNEGIHCDFKCSTCSKVFSRKDHLKRHLRCVHKYELEDDKINNSVQLTLDEPEIEFEKQVNPTNSTTAITATTLIGVDTDTNLNNHSSHWLDYEDEEEALPQVSDEQHASVAAVNPFSSDDDEENVYQIKKCDSLSSEEQEDIKEFAEYVVQPEISIKVENTEDSFNFNEFVKEIDAPREKRLITTIASLTDLKHEKPLSEDEVQEENQQHLGDENNDHDCGPISDTENMVEENSNNDKKVLKSTKNLRAFKTMKKEAKETEKSIRKNNNFVSNVKGHTTRRRYGASKNEENRCLQCNRTFSRYNHLLRHMLTHSDEKPHVCCYCGKRFSRSDHLQKHIASLHTEKQFKCDQCSCAYGRKDHLQRHKETRHGNNPPPPKLFECDMCEKKFTTKAYLMKHKQLHGARLYVCKHCPETFNDKDLLKEHQKKMHTQPRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGIKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCTQCPQAFAQSNDLKAHIRRHTGERFRCDVCGAAFLQRYGLKAHVKAAHGIIMTSFTGRLQKVQLPAELAQQILESPSQQQPQQQQQQVNVVQTTPSPSSMQSSCAANAVSQQYSLNPILMQTNSLIEANTTLVLSATQMSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00750635;
90% Identity
iTF_00750635;
80% Identity
-