Gmor006835.1
Basic Information
- Insect
- Glossina morsitans
- Gene Symbol
- Son
- Assembly
- None
- Location
- scf7180000652007:133331-148700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.19 10 6.3 0.2 1 23 1150 1173 1150 1173 0.94 2 12 8.2e-06 0.00045 20.0 1.4 1 23 1178 1201 1178 1201 0.97 3 12 0.0015 0.083 12.9 2.2 1 23 1206 1228 1206 1228 0.97 4 12 0.52 28 4.9 4.2 2 23 1235 1256 1234 1256 0.95 5 12 0.00067 0.037 14.0 4.2 2 23 1264 1286 1264 1286 0.95 6 12 0.028 1.5 8.9 0.6 1 23 1292 1315 1292 1315 0.94 7 12 0.0021 0.12 12.4 1.0 2 23 1326 1348 1325 1348 0.94 8 12 1.1e-06 5.8e-05 22.8 0.4 1 23 1376 1398 1376 1398 0.98 9 12 1e-05 0.00055 19.7 1.9 1 23 1405 1427 1405 1427 0.96 10 12 0.00032 0.017 15.0 0.2 3 23 1435 1455 1434 1455 0.97 11 12 0.0081 0.44 10.6 0.9 1 23 1462 1484 1462 1484 0.97 12 12 2.1 1.1e+02 3.0 0.6 1 13 1490 1502 1490 1506 0.85
Sequence Information
- Coding Sequence
- ATGGCGAATGAAATGGATCCAACAGATCAAGTTGTCAAATTTAAAGAAGAAAGATCAGATCCAGAAATAGAAAGAAGAATTCAGTTATTAACGGCGGCATCGACAACAGCAATAATTAAAGAAGAGCCTTTAGATTCCAATAATGGAATAGTAAAAGTCAATAAGAATATtaatgataatgaccgcgttaataatgctaattctgatgtggatgaatctgtcgatgatgatgatgatgatgatgTTTCGCAAGACACTCAAACCTCATCTGAGAAACATCAGAATGAAGACGATGATAAGAAAAGTGTCGAACCCGTAAAGAGTTCTAATGAAATATTAACTGAACTATTTAAAGTGTTTAATGTTGCCCCACCAGATGAGTTATTAGATGataaaaatctcattaataaagttaagaaacataaaaaagataaaaagaaaaaacataaaaaaaaTAAGTCCGCTGACGAACAGTCCGATTCAGAATCTGGAATTTCCAAGGGAAAACGTAAACATAAGaaaaaaaagaaacataaacataagcataaagatggtgataaagtgaaggaaaagggtaaaggtaaagacaaggagaagggtaaaactaaagacGTTCATAGAGATAGTACGGAAAAGAAAAAGAGTCGTGAAGGTGATAAATGCAAAGAAGAAGATAGACCTAAGCATAAAGAGGTTAGTAAACATTTGCCTTTGAATAAAAATAGCAAAGATTGCAAGACCTCGTCCGATCACAAGAGACGTCGCGATAAGTCAGAGAATGCAAATAATGCCAAGAAAAAGCGTTCAGAAGTTTTTAACGATTTTTACAAAGACTTTAGGGAGAAAGATAGCCAGCGGGGAAAAAAGCACAGTAGTCGTGGACGGGAACTGAAAATaaaaaaaGAGAATTTAGAAAGAGTAACATCTGATTCATCGAAATCGGAAGGCGAAATCAGCGACACTACACTTTCTGATGAAGAAACATATCTCAGAGAAAGAGAACCCGTTAGAGAAACTAGTTCACCTCATCATAGTAAAAATCGATCTCATAACAGTTTTTATGCTGGCTTAAAGCGTACTCGAAGTAGAGATCGGGTTGATGACCGTGATCGCGATTGCGCACGCAGTCGCGATAAATATCGTGATCGTGGACGAGAACGTAGTAAATATTCCTCTAATAGTCGTCGCTATAGTCGACGCTCACGCTCACGTTCTCGTACACGATCACGTTCCAGATACCACGATTTGGGCATTGATAAAAAACGCTTATTAGAAATTGCCCGGAAAAATGCTATCAGTATGTTTAAACGCGGCAATCTGCCCGGTTGCGATAATATGACCCAGGAGGTCAAGGATAAGGTACTACTCAAAATGCGTTATGGAGGCCGAACTGTAGAAGATCTTACAGAGTTTTGTaaaaaaaTCTCAAATGGTGAACATCTATCAGATTTAAGTTCTGATGAAGACTCCGATGTGGATAAAAGCGGCAATGCGAAAGCTTTTCACCACCCCTTCCAGATCAAAGAACGGGAACCAATTGTAATGCATATTCGTAATTGCAAGCCAATCGTTCCGGTTGTCGTTAAAACGGACGATCAAACCAAGGCCATAACCATGCAGTTCCCCGTGTCCTCTGGACAACAGCATCGTTTAACGGAATCTTGGATACTTGTGGAGGCCAAAGATAAGGGAGCGTCATTGTCGGCGTTGTCAACATCGAATCCAGCAGCAAATATATTCAAAAACAGTATGCCGAAAAATGTTCTCGGTAAATCCCTTCCTGCAGAGGAAGAACAAGAACCGGCTTTCAAATCAGTGCCACCTACGGCGGCAACGGCCGCAGAATCTGCCACAAGTGCAGATGTAAATGTTATTAAAACTGAAGACGCTTTGACGGAGCCAATTAATGGCGTTGCAACAGCATCGGTCGAAACGCCACGTGTTGATTTTGTACCAGATGTTCCGATTCCTTCCAGTACTGATACCGTATTCACTCAAAACGAAGGGCCGCCTTTAGATGTGTCCTCAATTATATCTAAAAGACTTAATGCTATGAGAAGATTACAGGAAAATCCCATGGATTCGGAGGCCTTAAAGATGATGTACAGCTCGCAACGTGAAATGACCAGTTGGGCATCATCTAAACATTTACCTGGCCAGTTTACTGGAAGCACTGGTGCAAATATACTAAAACCGAGCGAATTAAATTCGGGTCCTCAAGTGTGGGCGAGAAGAGATCAGTTGACCTCATCCAAACCCGTAACTGGTGGTGTGGGTATGCAATTATTACAGAAAATGGGCTGGAAACCTGGAGAAGGGTTGGGTAGAGACAAAAATGGAGCTTTGCAACCTTTGCTGCTCGATGTGAAATTAGATAAACGCGGCCTAGTAGCGCAAGATGATTGCAATGGCTTCGCGAGCCGTAAACTGAACCCACCAAAAAAGCGCCCTGTCAGCGGTAAAGCTCAAGCCCAATTAAATATCCAAGATAGACATCCGAGAAGAAAGGCAAAAACTATGGAAACTTGTCGTACCTGTGCCAAGTGTGATTTTGATAATGAAAGCCAATGGATGGATTTATTCAACCCGCAATATAGGCAAACGGAAATAGAATCAATTCGCATTGAGTTCAATATATGGAAATTGAAGATTTCACCTAATGATGGTTTACCGCAGAAAATTTGTCACGATTGTTTTAATAAATTCCTAACAATATCTTCATTTCGTTTACAATGCTCGGAGGCTCAAATTAAACTAAATAATATTTTCGATAAAATCGATAATCAAAGTATAAAAGACGTTGAAAATTTTGATAATTTTACTACCGAACAAGAGAATGAAAATAATAATGAGGGCACAGTTAAGGGGACTGCTGTTGGTATCATTGTCCATCAATCAACAAGAATTAAAAATAACACCGAAATTAAAACCAACGAAAATAATGAAGCAAAAAATACTATTTCTGCCAACGTGAAGGTTTCAAAGAAAACCATAAAAAACTATACAACACGCACTGCCGTTATAAAAACACACAACCAAAATTCCTCTGAAATTATtaataataacaataataatagtaatagcaataataatataataataCCTACGATTGTCGTGAATAATGCGAACAATAGGAAAAGCATTCACTGCGATGACACGAACATGATGAGTGACAATGGAATAATCGAAGAGTTGCATGATGTAGTGAAATCCGTTAATTGGAATACGAACGAAAGTGAAAACTATCCGAATAATGTCAACTTCAATAATGAGAAGAAGAAGAGCAGTTTTAGTCATTACAACGAAAATGATTTGACAAACGATAACATAAGCATAACGTTTGAATGTAAATATTGTTATAAGTCCCGGCATCGGCCAATCGAAATGTTCCAAACTCAACGGGATTTATTAACGCATATAACTGTCTATCATAATTCGGAAAATCCTTACAATTGTCCGTTTTGTGAGATGGGTTTTCAAGATGCCGCCTCAAGGACAATGCATTTGAAAGATCAACATTGCCAGAAAATGTTTACCTGTGAAACGTGCGGGAAAAAATATGCCGATCGTTTTAATTTACGTAATCACATTGAAAAATATCATACAGAGATCGATTATGATTGCACGCTCTGTCAGAAGAGTTTTCTATCGCGTAAAAGTCTCAATTATCACATGAAATGGCACAAGCCTGAGTATCAATTAAAATGCGCTTACTGCGAACGTTTGTTCATTAATCAGCGACATTTGAAATGTCACGAAGAGACTCATACGGGTCTAAGAAATCAAGAAGTCTGCTCATTTTGTGGTAAATGTTTCATTCATCTAAAAACATTACGCTGGCATATCTATCGTCAACATGATGGTGAAAAACCATATAAATGCGGTAACTGTTCAGAGGTATTTGCTTCCTATGCCAAAAAACGCTTACATATGCTGGACTATCATTTAGATAATTTGACTGTATTGGAGAAAACTGAATGTATGTTGTGTCATAAGAGATATGAAAATGAAATTGATTTGAAAAAGCATATGCTCGAAGATCATAACGAAGAGAAGTGCAGCATTAAAATAACGAATAACAAACGTGTGATAATGAATaaaaaacaaaaaCAATTTACCGGATTATTTCAATGTGAAGTTTGTGATAAACGTTTTAATATGAAATCAGCTTTAGAACGACATCAGGCAGTCCATTCGATCGAAGGAAGGCCTCATGCTTGTCCTCAATGTCCGAAACGTTTTAAACGCTCGCAAGATATGAACTGGCATTTGAAAACCCATTCTGAAGAGAAGCCCAATATATGTGACGTTTGCGGTAAAGGTTTTGCTTTAAAGTATGTCTTAACTCAACATCGTAGAAGTCACGAGGttttggaaaagaaTTTCAATTGCAAAATATGTGGACGTTCGTATTTATTTGAAAAATCTTTAAGATTGCATGAGCGCATACATACTGGAAAAACTTACTATAAATGCGATCTGTGCAATGCCAATTTTGTTACTCATATCAAATTTAAATGTAAGTCGAAAGGCACATGA
- Protein Sequence
- MANEMDPTDQVVKFKEERSDPEIERRIQLLTAASTTAIIKEEPLDSNNGIVKVNKNINDNDRVNNANSDVDESVDDDDDDDVSQDTQTSSEKHQNEDDDKKSVEPVKSSNEILTELFKVFNVAPPDELLDDKNLINKVKKHKKDKKKKHKKNKSADEQSDSESGISKGKRKHKKKKKHKHKHKDGDKVKEKGKGKDKEKGKTKDVHRDSTEKKKSREGDKCKEEDRPKHKEVSKHLPLNKNSKDCKTSSDHKRRRDKSENANNAKKKRSEVFNDFYKDFREKDSQRGKKHSSRGRELKIKKENLERVTSDSSKSEGEISDTTLSDEETYLREREPVRETSSPHHSKNRSHNSFYAGLKRTRSRDRVDDRDRDCARSRDKYRDRGRERSKYSSNSRRYSRRSRSRSRTRSRSRYHDLGIDKKRLLEIARKNAISMFKRGNLPGCDNMTQEVKDKVLLKMRYGGRTVEDLTEFCKKISNGEHLSDLSSDEDSDVDKSGNAKAFHHPFQIKEREPIVMHIRNCKPIVPVVVKTDDQTKAITMQFPVSSGQQHRLTESWILVEAKDKGASLSALSTSNPAANIFKNSMPKNVLGKSLPAEEEQEPAFKSVPPTAATAAESATSADVNVIKTEDALTEPINGVATASVETPRVDFVPDVPIPSSTDTVFTQNEGPPLDVSSIISKRLNAMRRLQENPMDSEALKMMYSSQREMTSWASSKHLPGQFTGSTGANILKPSELNSGPQVWARRDQLTSSKPVTGGVGMQLLQKMGWKPGEGLGRDKNGALQPLLLDVKLDKRGLVAQDDCNGFASRKLNPPKKRPVSGKAQAQLNIQDRHPRRKAKTMETCRTCAKCDFDNESQWMDLFNPQYRQTEIESIRIEFNIWKLKISPNDGLPQKICHDCFNKFLTISSFRLQCSEAQIKLNNIFDKIDNQSIKDVENFDNFTTEQENENNNEGTVKGTAVGIIVHQSTRIKNNTEIKTNENNEAKNTISANVKVSKKTIKNYTTRTAVIKTHNQNSSEIINNNNNNSNSNNNIIIPTIVVNNANNRKSIHCDDTNMMSDNGIIEELHDVVKSVNWNTNESENYPNNVNFNNEKKKSSFSHYNENDLTNDNISITFECKYCYKSRHRPIEMFQTQRDLLTHITVYHNSENPYNCPFCEMGFQDAASRTMHLKDQHCQKMFTCETCGKKYADRFNLRNHIEKYHTEIDYDCTLCQKSFLSRKSLNYHMKWHKPEYQLKCAYCERLFINQRHLKCHEETHTGLRNQEVCSFCGKCFIHLKTLRWHIYRQHDGEKPYKCGNCSEVFASYAKKRLHMLDYHLDNLTVLEKTECMLCHKRYENEIDLKKHMLEDHNEEKCSIKITNNKRVIMNKKQKQFTGLFQCEVCDKRFNMKSALERHQAVHSIEGRPHACPQCPKRFKRSQDMNWHLKTHSEEKPNICDVCGKGFALKYVLTQHRRSHEVLEKNFNCKICGRSYLFEKSLRLHERIHTGKTYYKCDLCNANFVTHIKFKCKSKGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -