Basic Information

Insect: Glossina morsitans
Gene Symbol: Pdf
Assembly: None
Location: scf7180000642294:200133-206925[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.025 1.4 9.1 1.0 1 23 32 55 32 55 0.96

2 9 7.9e-06 0.00043 20.1 1.4 1 23 130 152 130 152 0.98

3 9 0.0012 0.064 13.2 3.7 1 21 158 178 158 180 0.95

4 9 0.0018 0.098 12.7 2.1 2 23 199 220 198 220 0.97

5 9 9.5e-07 5.2e-05 23.0 0.7 1 23 226 249 226 249 0.96

6 9 2.6e-07 1.4e-05 24.7 0.5 1 23 255 278 255 278 0.95

7 9 0.0009 0.049 13.6 1.0 1 23 285 307 285 307 0.96

8 9 0.052 2.8 8.1 0.1 1 15 312 326 312 327 0.93

9 9 0.094 5.1 7.2 1.8 1 23 331 354 331 354 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.025	1.4	9.1	1.0	1	23	32	55	32	55	0.96
2	9	7.9e-06	0.00043	20.1	1.4	1	23	130	152	130	152	0.98
3	9	0.0012	0.064	13.2	3.7	1	21	158	178	158	180	0.95
4	9	0.0018	0.098	12.7	2.1	2	23	199	220	198	220	0.97
5	9	9.5e-07	5.2e-05	23.0	0.7	1	23	226	249	226	249	0.96
6	9	2.6e-07	1.4e-05	24.7	0.5	1	23	255	278	255	278	0.95
7	9	0.0009	0.049	13.6	1.0	1	23	285	307	285	307	0.96
8	9	0.052	2.8	8.1	0.1	1	15	312	326	312	327	0.93
9	9	0.094	5.1	7.2	1.8	1	23	331	354	331	354	0.98

Sequence Information

Coding Sequence: ATGGAAGAGTGCGAGGAGTTCGAGCTTTCGGTTTTGCAAAAATGCGGGGAGATTTTTTGTGATACTTTGACTGCTTCAGATGTAAACGTCAGTTTTCAGTGCACTTTCTGCCGGAAAACTTACGCGGAACTAAATGTTTTTATACAACATTTGCAAAGTGAACATTACAAAGCGCCTACTCCTACAGATATTTCTTCGGAAAGTGACAGAGAAGAAAACGCGGAAATAATTCTGTTTTCTACTGAAGACATCCTTACCGCGGCAGAAGAAGGTATCAGCCAATATGTATTGGATAAAAATGAAGATACGACATCCGCGTTGGAAACATATAGTGACCACAGTTCCAATCAGAGTGTGAATACTACACTGCCAGCGGCAAAACAAGAATATGTTTGTCCGCAGTGCAACAAAATATTCAGGGAAGCCTGCGATTTGAAGCAGCATTTAAGTACACACGATAGCGTGAAGCCTTATAAATGCGAACGCTGCCCAGCATCTTACGTTTATAAATCGAATCTTACAACCCATAAAAGATGCCATGAGAGCAATGGGACCTATAAGTGCCACGAGAGAGAAAGGCAGAAAGGGCGAAAAACGTGCCTTTTTTGTGCGAAGGTTTTTACTTCTACCAGCAATCGACGCCGTCATGAACGCATTCATACCGGCGAACGGCCTTTTGTATGCGAATTCTGTGGTAGAAGTTTTTCTTCTTCGTCTGACTTAATTAGCCATCGTAGCAGTCAGCATTTAAAGGAACGAAATTTTGTTTGTGACATATGTGATAAACGTTTTAACAGACGTAGTCAATTGCGAATACATCAAGCAAACGTTCACTCTGAAAAACCGCCTACTCATATCTGTACAATATGTGGAGCGGCCTTCCAAAAGATACACGATTTAAAAACTCATGTTAATGTTCATAAAGAAAGAGCCTATAAATGTTTAGAGTGTGATAAATTGTTCGCTCATCCCTCCGATGTGGATGTGAGTTTTCAGTGCACTTTTTGCCGGAAAACTTTAATGGAACTAAATACATTTTTACAACATTTACAAACCGAACACTGCAAACCGCCCATAGCTGCGGAAGAGTTCCCTATGgaaagtgttaaagaagaagaagaagatacggaagaaatattttttgaaactgaagaagtactttttgaagcggaagaTATCCCCATTTTAGCAGAAGATGATGTCAGCCAATACGTGTTAGATAAAGATGAAGAAATTCCTATTCCATTGGAGCATGTCATGAAAATCACAGAAATTGAAATGAAATATGACCATAATTCCAAAGCAAGTCAAAATATTCGCCACCTTTGCACTACGTTCACCAAAGCAAAATCATTTCGACAATGGTATCGTGATTTATGGATACCTGACCACCCTTGCCAACCACCCTATTGGCATTTTACTCAAATTGGTGACCCCATACTAAGAACTAAAGCTAGTAATGTGCCAGAGGATGCCATTAAGGAACCAGAAATCGCCGACTTTGTAGACCAAATGATTAAAATGTTGCGTAAATATAATTGTGTGGGCATAGCAGCACCACAGATTGGGGTATCGCTGCGTATTATTGTAATGGAATGTAAAGAAAATTTGAAAGAAAAATTCTCCAAAGAAGTTTACTCGGCGAGAGAAATGTCAACACTCCCGTTAACGGTTATGATTAATCCGACTTTAAAAGTTCTAGATTATGATAAACGTAAATTTTTGGAAAGTTGTATGAGTGTGAAAGGTTATTCTGCAGAGGTGGAACGGTATCGTAGCGTTCGTTTAACTGGTGTAGATGACAGAAATAACAAACAGGTATTAACATTGAAAGGTTGGAATGCGCGCATAGCTCAGCATGAAATGGATCATTTAGATGGTAAACTATATATCGATAATATGGATCCTTCAACATTTCATTGTACGTGCTGGGAGGTAGTTAATAGAAAAGCTGGTCGCGTTGAAATACCTTTCTATAAGTGA
Protein Sequence: MEECEEFELSVLQKCGEIFCDTLTASDVNVSFQCTFCRKTYAELNVFIQHLQSEHYKAPTPTDISSESDREENAEIILFSTEDILTAAEEGISQYVLDKNEDTTSALETYSDHSSNQSVNTTLPAAKQEYVCPQCNKIFREACDLKQHLSTHDSVKPYKCERCPASYVYKSNLTTHKRCHESNGTYKCHERERQKGRKTCLFCAKVFTSTSNRRRHERIHTGERPFVCEFCGRSFSSSSDLISHRSSQHLKERNFVCDICDKRFNRRSQLRIHQANVHSEKPPTHICTICGAAFQKIHDLKTHVNVHKERAYKCLECDKLFAHPSDVDVSFQCTFCRKTLMELNTFLQHLQTEHCKPPIAAEEFPMESVKEEEEDTEEIFFETEEVLFEAEDIPILAEDDVSQYVLDKDEEIPIPLEHVMKITEIEMKYDHNSKASQNIRHLCTTFTKAKSFRQWYRDLWIPDHPCQPPYWHFTQIGDPILRTKASNVPEDAIKEPEIADFVDQMIKMLRKYNCVGIAAPQIGVSLRIIVMECKENLKEKFSKEVYSAREMSTLPLTVMINPTLKVLDYDKRKFLESCMSVKGYSAEVERYRSVRLTGVDDRNNKQVLTLKGWNARIAQHEMDHLDGKLYIDNMDPSTFHCTCWEVVNRKAGRVEIPFYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -