Gmor004240.1
Basic Information
- Insect
- Glossina morsitans
- Gene Symbol
- cuta
- Assembly
- None
- Location
- scf7180000650763:31590-38504[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.9e-06 0.00027 20.7 1.6 1 23 355 377 355 377 0.97 2 14 4.8e-07 2.6e-05 23.9 4.0 1 23 383 405 383 405 0.98 3 14 2.4e-05 0.0013 18.6 3.1 1 23 411 433 411 433 0.98 4 14 0.0065 0.35 10.9 6.1 1 23 439 461 439 462 0.95 5 14 0.00047 0.025 14.5 3.2 1 23 475 497 475 497 0.97 6 14 0.0015 0.081 12.9 4.5 1 23 568 590 568 590 0.97 7 14 0.025 1.4 9.1 2.6 1 23 599 622 599 622 0.92 8 14 0.00079 0.043 13.8 0.2 2 23 631 653 630 653 0.96 9 14 0.24 13 6.0 0.1 1 20 655 675 655 677 0.95 10 14 0.0063 0.35 10.9 5.2 1 23 890 912 890 912 0.98 11 14 0.00061 0.033 14.1 9.7 1 23 925 948 925 949 0.97 12 14 0.14 7.4 6.7 0.0 1 21 954 974 954 975 0.93 13 14 4.2e-06 0.00023 20.9 1.5 1 23 1000 1022 1000 1022 0.98 14 14 0.023 1.2 9.2 0.2 1 23 1028 1050 1028 1050 0.96
Sequence Information
- Coding Sequence
- ATGTCTAAACCGGCGTACTGTTATGAGAGGGGTAGCTCTTCTATAGCATTTGTTACGACTCCCGATGATGAGACAGCCAGAAAGATTGCACGCGGTTTGGTCGAGAATAAATTAGCTGCCTGTGTAAATGTTATACCGCAAATTCGTTCGATATATATGTGGGAAGGCAAAATCAATGAGGACAATGAATTTCTGCTAATGATTAAGACACAAAGTAGTCGCCTGGAAGATCTTACGAAATATGTACGTGACAATCATCCATACAGCGTAGCTGAAGTGATCACCACGCCTATCGAAACGGGCAATTCGCTCTATCTCAAATGGCTGGAAGACACTTTGAGAAACGACTTTAAAGAAGTGCTGCAGCATAAGAAAGACAAAGCAAAGCATGATGAGATGACAATTGATGAGGATATGCTCCGATTATTAGATCAAAATGATGAAGAGTATGATAATGAAAATAAGTCTGTAACGAGGAGTTCTCAGAAAACACCTGACTCCACGGAAAAGACATGTGAACAATCAAATGGTCACGAACAACAAGATGTGaaaaaaaaCGAACTTAATGCAAAAGTATCGAAACATGATGACCAATATCAGTATGGTAGTGATATAGTCATTGATGTTGAAGAAGAAGAGCGTTTATCAATGGACGAAATAGTGCCAGAAGAATCATTCGAGAAACAAGAAGGATATGCTTATGAAGATAGTCAAGACTGCGTCAATATGGAGGCCGAAGAACAACCCCTTGAGGGTGAGTATTCAAATAATAACGAAGTTCAAGAAGATAAAATTGCTCGGAAACGAAACGAACAAAATATAAATGATGGTTACTTGCGAGAATATGAAGCTATGCTCCAGGTAAATAACTTACACAATAATACTTGTTGCGCGGACGAAAATTCCTCCATGGACGCTGCGTCCCTTCACAGTAATATCATAGAAATAGATGCGAAAGTAATGGAAGCCGAATTAGAGGATAACAATACACAATCTTCCATAAATGAGAAAAGCAAACCGCATAAAACTTTAAATAATTCTTTTAATGCGACTTTACCGCGTTTCTATTGCGCCCAGTGTAATCGGGATTTTAGCACCAAAACTAATTTAAATCGTCATATGTCGGCGCACGCCGGCAACAAGCCGTACGTTTGTCATACTTGTAACAAAAGTTTCTCTCAGAATGGCTCGCTTAAGCAACACATGTACACGCATACCGGTGAGAAACCCTTTGTTTGTGAGATTTGCGATCGTGGCTTTACTCAATGCAAAAATTTAATATATCATAAGCGTAGACACACCGGCGAACTGCCGTTTCAATGCGATCATTGCCGAGGTACGTTTCGTCAGAAAGATGCGTTAAAGGTTCACTTCTTTAAACATCATATGATTACGGAGAAAACTTACGACGGTCAATCGACCTATGTGTGCACTATTTGTCAGAAAAGCTATCACAATAAAGTAGATGTCCAAAAGCACATGTTCTATCACGTTAATAATAAAAATAACTTTGTTCTGACTGATGCCGAGGCCATACAACAGGAAGCTGAAGACGAGATCCAGGATAGCATTTTGCCAGACAATATGAATCCAAATTTTTTAGTTAAGGAAATGGATATAAACGATGTTGTTCTTACGAAGGCAAACTGTGTTGTAGATGTTAGTGCTAGTTCAGCTGCCGAACCCAGTCGAGCTAAACGTTTTAAATGTCGTAAATGTTTCAAATGTTTTGCGATCAAAAAGAATCTTTTACGTCACCTGGCTTTACACGATATCACAACGAATGCTATTAAACATCCTTGTTCGTTTTGTGATTTAACATTCGATACAAAGTATGCTGTCTGCGCTCATCGTGCTCAGCAACACGCGAACCTAATTGGCAGTCCTATACAGTGTAACGATTGCAATATGGAATTTTCAACAATGAACGCTCTAATGGAACATCTAAGCAAACTGCATCAATATCAATGCGCCGATTGTCCAAGCGAGAATTTTCAATCATTGAATGATTTGAAAAAGCATATTGTAAAAACGTTTAATTTTATTGCAATGGCATTGAAAATGTGTAGAATTTGCGGCGACAATAAGGATTTAAAATCTATATTGGTGGAAGGAGAAGAACTACAAGAAAAGCTTTTAATCTGTACTAATATAAAGataaatataaatGATTCCTTACCTAAGCACATATGCATGAAATGTGAACAAAATCTAGAGTTTTCTTATCGCCTGCGTAAACAAAGTGAAGCCACCGAAGAACGCTTGAGGAAGGAATTACAGGCAAACGTAGACGAGGCGTCACAAATAATACCTCAAGAAAAGAAGGAACTTGATCTATTAGATGATTTTGTTCTAGATGAAAAAGTAGAAGAATTCATAAAAATCACCGAAGAAGAGAAAACCATTGCAGCTTGTACATCGGAACAATTTCAATTACAAGAAATACACGTTAAAGATATACGTAATGAAATTGAGGAGTATGATGCGAAAACTGATATTGTCGATGATGTAAGCGTAACCGATAACTACTGCGAAATTTTGGAAGGAGCGCGAAGGGAAGATGTTATTGATTTAATCAGTGAGTCTAGTAGTAATGCTAATGATTGGATTCCTCCTACCGATTCCGAAACTGACATAGTGCCTAGTATTGATGATAAAGAATCAATGTTTATCTGTCTTATTTGTGGTCTTACATGCCATTTTCGCTCGAATTACAACAATCACCTCAAGACGCATCTTTCGTGTGATAAAATTAATGGTATAAAAAAGAGGCATAAATGTCCTCATTGCGATAGCTCTTACTCTCACCGCACAAGTCTCAACCGTCATACCCGTACACTTCACCACGAGTTAAAAACTTACACGTGTCCAATATGTAATGATAATTTTGCTGAGCCAGATGTTTACAAAAATCATATTATTTCTTATTCCAAAGACATTTCGCGCGATGCGAATGGGAAGCGTTTGTGCACTGATGCGCATATCAAAGAAAAACCGTATGCATGTACGAACTGTAATAAAACCTTTTCTACCACAGGCTCTCTCTTGAATCATCAGCGAAATCACACTTCTTTAAGGCAATATCAATGCGATCTTTGTTTGCAAGGATTCGTAGAGCTGTCGGATATGAAGAAGCATAAATTGGCACACGACGGCAATGGTCCACTGTTCTGTCAAATATGTCACTTGGGCTTCATTGAAAAAGATTGCATTAGCAGCGAGAATGAGCGAATTTTAGATGCTGAACATAATCAACAGAATGAAGAATCGATTCAGAATGGATTCAATAATAGCGAATTTATTTGTGGTGAAATACACTCTTTAGATGGTAGTGGTAGCGAAAATGCTAAAATCGTTTCTGAAACTTTAGATTCGGAGCATATTACGCAAAAGGAAGAATCAGTCGGAAATGCTTTTGATAATGATGTTCGGATCAGTGGCAGAATATATTCTTTAGATTCTGTCGGCAGTGATAATATTGAACATGTTTCTGAAACTTTAGATGCTGAACCTACTGAGCGTAATGAAGAATCGATCCGAAATGATTTCGATAATAATATTCTTATTAGCAGTAAAATATATTCTTTGGATTCTCCCAGCAGTGAGAATACTTTGAGCGCATCTGAAATTTCAGATACTCAACATATTGAACAGAGCGAATCATCGATTCCAGACGGCTATGATAACATCCTTATTAGTAGTGTCTATTCTTTCAATTCCGCCACCAATCATAATGTACAAGACTTTCTTGTAATCGAGTCTTCGAATTCAAATGCATCAGTAATTGATATCACCAATGATGTGGAAGATGAGCCTGCAATCCAAGCAAGAACAGAACAAGTTAGTACTGAAGATATGCACATTCACGGGCTTGTAACTAGGAGTACATAG
- Protein Sequence
- MSKPAYCYERGSSSIAFVTTPDDETARKIARGLVENKLAACVNVIPQIRSIYMWEGKINEDNEFLLMIKTQSSRLEDLTKYVRDNHPYSVAEVITTPIETGNSLYLKWLEDTLRNDFKEVLQHKKDKAKHDEMTIDEDMLRLLDQNDEEYDNENKSVTRSSQKTPDSTEKTCEQSNGHEQQDVKKNELNAKVSKHDDQYQYGSDIVIDVEEEERLSMDEIVPEESFEKQEGYAYEDSQDCVNMEAEEQPLEGEYSNNNEVQEDKIARKRNEQNINDGYLREYEAMLQVNNLHNNTCCADENSSMDAASLHSNIIEIDAKVMEAELEDNNTQSSINEKSKPHKTLNNSFNATLPRFYCAQCNRDFSTKTNLNRHMSAHAGNKPYVCHTCNKSFSQNGSLKQHMYTHTGEKPFVCEICDRGFTQCKNLIYHKRRHTGELPFQCDHCRGTFRQKDALKVHFFKHHMITEKTYDGQSTYVCTICQKSYHNKVDVQKHMFYHVNNKNNFVLTDAEAIQQEAEDEIQDSILPDNMNPNFLVKEMDINDVVLTKANCVVDVSASSAAEPSRAKRFKCRKCFKCFAIKKNLLRHLALHDITTNAIKHPCSFCDLTFDTKYAVCAHRAQQHANLIGSPIQCNDCNMEFSTMNALMEHLSKLHQYQCADCPSENFQSLNDLKKHIVKTFNFIAMALKMCRICGDNKDLKSILVEGEELQEKLLICTNIKININDSLPKHICMKCEQNLEFSYRLRKQSEATEERLRKELQANVDEASQIIPQEKKELDLLDDFVLDEKVEEFIKITEEEKTIAACTSEQFQLQEIHVKDIRNEIEEYDAKTDIVDDVSVTDNYCEILEGARREDVIDLISESSSNANDWIPPTDSETDIVPSIDDKESMFICLICGLTCHFRSNYNNHLKTHLSCDKINGIKKRHKCPHCDSSYSHRTSLNRHTRTLHHELKTYTCPICNDNFAEPDVYKNHIISYSKDISRDANGKRLCTDAHIKEKPYACTNCNKTFSTTGSLLNHQRNHTSLRQYQCDLCLQGFVELSDMKKHKLAHDGNGPLFCQICHLGFIEKDCISSENERILDAEHNQQNEESIQNGFNNSEFICGEIHSLDGSGSENAKIVSETLDSEHITQKEESVGNAFDNDVRISGRIYSLDSVGSDNIEHVSETLDAEPTERNEESIRNDFDNNILISSKIYSLDSPSSENTLSASEISDTQHIEQSESSIPDGYDNILISSVYSFNSATNHNVQDFLVIESSNSNASVIDITNDVEDEPAIQARTEQVSTEDMHIHGLVTRST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -