Gmor003543.1
Basic Information
- Insect
- Glossina morsitans
- Gene Symbol
- -
- Assembly
- None
- Location
- scf7180000641293:147836-151851[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.15 8.1 6.6 0.0 2 23 207 228 206 228 0.95 2 17 3.7e-06 0.0002 21.1 1.2 1 23 261 284 261 284 0.96 3 17 0.12 6.5 6.9 0.5 3 23 287 308 286 308 0.94 4 17 0.12 6.7 6.9 1.6 2 23 407 427 406 427 0.95 5 17 0.0012 0.063 13.2 2.3 1 23 441 463 441 463 0.97 6 17 7.9e-05 0.0043 16.9 0.9 1 23 472 495 472 495 0.96 7 17 0.00037 0.02 14.8 0.6 3 23 502 522 501 522 0.97 8 17 5.9e-07 3.2e-05 23.6 0.8 2 23 528 549 527 549 0.97 9 17 0.0045 0.25 11.4 3.1 1 23 555 577 555 577 0.98 10 17 0.017 0.92 9.6 3.9 1 23 582 604 582 604 0.95 11 17 0.88 48 4.2 2.6 1 23 609 633 609 634 0.95 12 17 0.0013 0.068 13.1 1.5 1 23 746 769 746 769 0.94 13 17 0.00017 0.0093 15.9 0.9 1 22 772 793 772 793 0.95 14 17 2.7e-07 1.5e-05 24.7 0.7 1 23 794 816 794 816 0.99 15 17 5.6e-05 0.0031 17.4 1.9 1 23 822 844 822 844 0.98 16 17 0.0002 0.011 15.6 1.1 1 23 849 871 849 871 0.96 17 17 0.05 2.7 8.1 0.3 1 23 876 900 876 900 0.97
Sequence Information
- Coding Sequence
- ATGGCAGAACGCTGTCGTACATGTTCACAACAAAGGATACTAGGAGAGCATTATGGATTAGATTGCGAAATTAAAGGAGATATTACCTATGCTGACTTCATTTATCAAATCTCAAATGTAAAAATTGCAAAAAATGATGGCTTACCGCAATGGATATGTTTCGAATGTGTTAAAGAGGTTATGGTGGCTTTTAAATTCGCTTTAAAAGTCAAAACAACTGATGAAGTGCTACGAAATGAATGGCAACATTGGAAAAATTTCTTTGAAGAAAATCAAACTGAAAATATTCAGGAGGCTAACCAGGAGACTACTTCAGGACTTGTTGTCAATGATTTAACGGAGGAGTATGTAATGGAAGAAATCTTGGAAAATGTTGAAGACTCGCAAAATGAAGATGATGAGTTATCAATGGTGGAAGAAATCCTTGAGGAGACTGAAACTACCGCTTGTCTGCAACCAGAAGAGATAATGCTGCCAACTGACCACCTATTAGAAGACACCAATGTTAATGATGAAATGGAGAGCTTCTATAGTGATAACGAAACAAATGACGATGAATATCTAATAGAATATAATGCTTTAGATGAACCTCAGTCGGAAAAACATTCTCCTAAATGGAAATGTGCGGTATGTGATAAGGTGTTGCGCGGTGATGTTTCCTATGAGGGTCACATGAATTTGCATAAACAATTAAGACCTTACAAATGTCCTCAATGTCGTTGTCAATTTCGGTGTCACGAAGCTTTaaaaaaaCACAAAACTCTACGTCATGTGGACACATATAATTGTGAGGTTTGCGATAAAAGCTTTGCATCTAAAGACTTGCTTTGTAAACATGTGGAGAGAGAACACAAAATTTGTCTTAACTGCGGCTTGGAGTTTGATCACGAAAGCACTGTTCAATTGCATAAAATTATGAATCATAATATTAAGGCTACAAGTTGTCCACTATGTCCGCATTTAAATATTAGCGAAGTTCAAAAACATATTCTTACCGTGCATTCACTTGAGCTGGATTATGAGAATGTAAATATTGCGGCAGAGGCTAAGCAATCTAATGACTTGATGGAGGAAAACTTAGAAGGTGATGTTTCTCTGCACAGTTCTCATTCTGGAATCTCTTCATCTGATCATCGAGAAACCTATCAGCAAAAAGATAAACAACTACCTCTGGAGTTAGTGAACAACAACAAGCTGGATAAAAGGGAATCTTTTGTGCAATGTAAATTTTGTAAAAAGAAATTAATGTCTAAGAACCTAGAGAAACATTTGGCGTTGCATGAGAAAAAGGCACGTGAGGCTCAGATGACTAAAACTCAATACTTTTGCGCTTATTGCCCAAGCGGCTTTAAAAACCAAAGAAATCTACACCAACATGAGAAAATCCATCAGGAGACGTCACCTAATGTGGTATATGTGTGTAACGATTGTAGTCGCCAGTATAGTACGCAGCAATTACTTGAAACTCATCGCAAACAAGCTCACAAAGAACGAGACAATATCTGCTCGCTATGCGGCAATGCATTCAAATTGAAAAATCAATTAATGAATCATATGAAATTGCATTTGGAAAAGAATATACCCTGTCCGCATTGTGATAAGAAGTATGCGCGGCAATTTGATTTGAACGTACATTTGCGAACGCACACAGGCGAATTGCCTTACTCCTGTCATTTGTGTGAGAAACGATTTGCCATCAAAGTGCGACTAACCTATCATCTGCAAAAGCATTATGGGGTTAAGCATCGTTGTAAGGAATGCCAAGCTGAATTCAATTCAAGGCAGAAATTAAAGGCCCACTCTTTTAAACACACGGGTATGCCGTATCGTTGTCAGTTGTGTGATGGCCATGGTTTTCCAACCAGGAATGTATTTAAACGTCATTTGGCAAGAGTTCATCACGCTATGATGAGCGATGAGGCTTTAGCGGAAATGTTTCAACATTATACGGGAAAGGCTACGATAATAAAACAAATTAATGACTTTGAGATGATTCCAAGAAATGAAGATGACCAAGATCAGAACATACTTGAAGAGAATCCGGATATCATTAGTGATGCAGATATAGTTACGGATCATGAAAATAAAGACCAAGTTAAGAGGAGCAGACAAGGTGGTGTTCATCTTCATTCATTCTTTTTCTTTCCTTACCTCTCCACAGCTCAACATTTTCACAAGGACGAAGATCTCAATGAACATGAACTCAATATCCATAACTCAAGTTCAAATCTTTTGCATAGATGCAATAATTGCGGCACACGTTTCTTTACCTTAGGCGATTTGCTCGATCATAAAAAAGCCGACCATCCGGCTTATATATGCAAAATATGTGGCAACACCTTTAAAGGTCATTCGCAACTTTCTGCTCATAAGCGTCGATTTAAATGTGCAAATTGCGACAAATCTTATCCCCGCCAAACAGATTTAAATATTCATATGCGTTCTCATACTGGGGACAGACCTTACGTTTGCCATATATGTGATAAACGATTTCCGGTAAAGGTGCGTCTCACCTATCATCTACAGAGGCATCAAGGAGTTCGACATCCTTGTCCCTATTGCGATGTTGCTTATGAAAATCGCAATCAATTGAAATCCCATTTATTCAAACACACTGGCATGCCATACAGATGCGAAATATGCCCAGATGTAGTATTTGAAAGACGAATAAGATTCGCTAACCATATGAAGAGAATGCATAAGAAAACTATGACAATCGAAGAATTGGCCGAAATGTTTGCGAAAAATACCGGCAAAGTGGTACGTTTTAAAAAGGCGGAAACGGATTGA
- Protein Sequence
- MAERCRTCSQQRILGEHYGLDCEIKGDITYADFIYQISNVKIAKNDGLPQWICFECVKEVMVAFKFALKVKTTDEVLRNEWQHWKNFFEENQTENIQEANQETTSGLVVNDLTEEYVMEEILENVEDSQNEDDELSMVEEILEETETTACLQPEEIMLPTDHLLEDTNVNDEMESFYSDNETNDDEYLIEYNALDEPQSEKHSPKWKCAVCDKVLRGDVSYEGHMNLHKQLRPYKCPQCRCQFRCHEALKKHKTLRHVDTYNCEVCDKSFASKDLLCKHVEREHKICLNCGLEFDHESTVQLHKIMNHNIKATSCPLCPHLNISEVQKHILTVHSLELDYENVNIAAEAKQSNDLMEENLEGDVSLHSSHSGISSSDHRETYQQKDKQLPLELVNNNKLDKRESFVQCKFCKKKLMSKNLEKHLALHEKKAREAQMTKTQYFCAYCPSGFKNQRNLHQHEKIHQETSPNVVYVCNDCSRQYSTQQLLETHRKQAHKERDNICSLCGNAFKLKNQLMNHMKLHLEKNIPCPHCDKKYARQFDLNVHLRTHTGELPYSCHLCEKRFAIKVRLTYHLQKHYGVKHRCKECQAEFNSRQKLKAHSFKHTGMPYRCQLCDGHGFPTRNVFKRHLARVHHAMMSDEALAEMFQHYTGKATIIKQINDFEMIPRNEDDQDQNILEENPDIISDADIVTDHENKDQVKRSRQGGVHLHSFFFFPYLSTAQHFHKDEDLNEHELNIHNSSSNLLHRCNNCGTRFFTLGDLLDHKKADHPAYICKICGNTFKGHSQLSAHKRRFKCANCDKSYPRQTDLNIHMRSHTGDRPYVCHICDKRFPVKVRLTYHLQRHQGVRHPCPYCDVAYENRNQLKSHLFKHTGMPYRCEICPDVVFERRIRFANHMKRMHKKTMTIEELAEMFAKNTGKVVRFKKAETD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -