Gmor007094.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossina morsitans
Gene Symbol
-
Assembly
None
Location
scf7180000647995:215993-234654[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.11 5.9 7.1 0.3 1 20 275 294 275 296 0.93
2 12 0.0082 0.45 10.6 7.1 1 23 399 421 399 421 0.99
3 12 8.8e-06 0.00048 19.9 0.6 1 23 427 449 427 449 0.97
4 12 3.1e-06 0.00017 21.4 0.3 3 23 457 478 456 478 0.97
5 12 0.011 0.63 10.1 5.0 1 21 484 504 484 506 0.95
6 12 2.3e-05 0.0013 18.6 2.5 1 23 512 534 512 534 0.99
7 12 2.5e-05 0.0014 18.5 0.7 1 23 540 562 540 562 0.98
8 12 2.7e-05 0.0015 18.4 1.8 1 23 570 593 570 593 0.98
9 12 0.00016 0.0087 16.0 0.2 2 23 600 621 599 621 0.97
10 12 0.00064 0.035 14.1 1.1 1 23 627 649 627 649 0.98
11 12 5e-05 0.0027 17.6 0.2 1 23 655 678 655 678 0.95
12 12 3.3e-07 1.8e-05 24.4 3.2 1 23 692 714 692 714 0.97

Sequence Information

Coding Sequence
ATGTTGGGAGAAAATTTGACAATAACTGATAATTACGTCTTCCTTTTTGTGCGTCCTCTCTTCACGGGCGGGGGTACGTTATCTGCTGGAGATTCCTCTTCTGGCGTCAAATCGCATAGCGATATTAATATCTTTGCGCGTCTTTTTAAAGCTTTCAATGCCAAAGAAGCCTACTACGTAAGCAACAATCTTTGTACTATAGAATATAAAGTCAAAGCCAAAGTAAATATGGAAGAAGGAAAAGATCGCCAATTGCAGGCGTACATTCAATATTTGAATCAGGATATGGAAGATTACGATAGCGAAAGCGTAGTTTTAACCACAGAAGCAGTTGAAGCTTTGGCCGATGTTGAGGCGGTAACAAAACATCCCAGTGCCGACAATAATGCCGACGGTAAAGATGGCACTGGCACCATAATCGTCGACGCTGACGGCAACTATTATTTTCAATCTTCGAAAGGCACCGTAGAAGTGAAACCCATTAAAATGGAAAATTCTACGAAGGTTATTGCAAGTAAAAGCGCTACCGTGGTCAGTACTGCAAATCTACGCATTAAACCAAAAAGCTCTAGGGACACTACCGCTGAAACTAATATTCTGGAGGAATCAAGTCTTCAATTAGACACTTTGGAAGCAACAAATGATGATACCTTTAATCCATCTCAAACTATAATTGGCAATAACGATGAACAGTTATATGAACTAGATCGCACCAGTGCTATTGCCGACGAAGAAACTAACGCTGAAATGTTGTCTTCAATCTTAGTTAAACCACAAACAACAATGACAGAGTCCGCTTACAGTTTAAGTGCGGCAAATATCTATAAATGTAACGATTGTAAATTTGAAACGAATATGGAATACTTATTAACAGAACACGTTGAGAAGAAATGCAAGAACATAGCAAAGTCGCAAGAAAATAGCTCCCCTCGAAGTTCGTCGAAGGAAAAACGCAAAAATAATGCCGTGGAGGTCTTGACTGATGAAGTTATCACAGCAGCGAATACTGTAAAGAGAGTCACAAGTAATGTTGGTAAAGCGCGCGAGAAGACTACTAAAAAGGAAGAAATCTATGATTTTGACGAGAATGAAATAGAAGATTCAAAAAATGCTGATGGCAAAAGCAAATCGATTGAAGTACCAACAACGGAGGCTTTTCTCAAACCTTTGGATACCGCTGCTAATGCTGATTTATATAAATGCACTCATTGCACTTATACTACTAACAAAAAATTCCTAATGTCACGTCATATGAAATCTCATTCAGACGATCGTCCTTACAAATGTTCAATATGTGAAAAAGGCTTCAAAACTAGTGCGTCATTAGTTAATCATGTCAATTTTCATTTGGGCAAAAAACCTCACGGATGTACGTATTGCGATAAAGCTTTTACTACATCGGGAGAACTAGTTCGGCATGTACGATACCGTCACACAGGTGTTAAACCTCATAAATGCACTGAGTGCGACTACTCGAGTGTGGAAATGAGTAAGCTTAAACGTCACATGCGATGCCATACCGGAGAACGTCCTTATCAATGTCCGCACTGTACATATGCCTCACCGGATTCCTTCAAATTAAAGCGCCATTTGCGCACCCACACCGGCGAAAAGCCATATGAATGCGATATATGCAATGCTCGTTTCACACAATCAAATTCTCTTAAGTATCATCGACTGATTCATTCAGTTAATGAGAAGCCCGTTTTTCAATGTCCTATGTGTCCGACTACATGTGGCCGCAAGACTGATCTGCGCTTGCATATGCAAAAATTGCACAGCTCTGACAAAACGTGGCCATGTAATCGCTGTGGTAAAGAATTACCAGATCGTTACAGTTACAAAGTGCATATTAAGACGCACGAGGGCGAAAAATGCTTTCGTTGCAAACTTTGTCCGTACGCTTCGATTACTCAACGACATTTGGATTCTCATATGTTGATACACACCGATGAAAAGCCTTTCGTTTGCGAAATCTGTGAAGTAGCTTTTCGGCAAAAGCAACTACTTAACCGTCATGTAAATCTATATCACAATGAGGAATACAAGCCACCATCAACGCGGGAGAAAGTGCACGTTTGTCCACACTGCAATCGGTCATTTTCCTTCAAAGGCAACTTGATGCGTCACATGGAAGTACATGATCCTTTTTCAAGGCACGAAAGTGAAAAACTGAAATTGAAGCTGGGTCGTATGAATCGATTAAAACCAGACGGAACCGTTATACAATATTCTACAGACGATCTGTCCGATGGGGAACAATTATCAACAGACATAATCGATACAAAAGCTACTGTCGAACAAGAAATAACTTCGGATGAGTATATGTTGTATCCGGAAGATGATGAACAACAAGGCGAAATTCAGTATTCGATATATGACGATTTCGAAGCAGATGAAACATTATTAGACCAAAAGCCAATTATTAAAATTGAAAATGCTATCAAAGGTGACCAACAGCAACAAGCAAAGCAATCGTCGGTTTTAAAAAATAAAGATAAATTCATCGATCTGCAAGTAAACGACGGACAAAACGTTGTTGTTATAAAAGTAATGCACGATGATGCGGACGATGGCATTGACGAGAATACTGAAGTAGATCAAGAACAAGATGAAGAAATGGTTATAGATAATATGGAACAGGATAATATTAAGCGACCTGTCTTCGGTGACGATAAACAATATACGCACAATAATAGCTTTGGTTTTGTGgaagatgatgatgatgataatgatgatgatgatgctgatgatgccaatgaagataacaataaGCAAGTCATAGAATTATTTCATATTGCTGAGCTTTAA
Protein Sequence
MLGENLTITDNYVFLFVRPLFTGGGTLSAGDSSSGVKSHSDINIFARLFKAFNAKEAYYVSNNLCTIEYKVKAKVNMEEGKDRQLQAYIQYLNQDMEDYDSESVVLTTEAVEALADVEAVTKHPSADNNADGKDGTGTIIVDADGNYYFQSSKGTVEVKPIKMENSTKVIASKSATVVSTANLRIKPKSSRDTTAETNILEESSLQLDTLEATNDDTFNPSQTIIGNNDEQLYELDRTSAIADEETNAEMLSSILVKPQTTMTESAYSLSAANIYKCNDCKFETNMEYLLTEHVEKKCKNIAKSQENSSPRSSSKEKRKNNAVEVLTDEVITAANTVKRVTSNVGKAREKTTKKEEIYDFDENEIEDSKNADGKSKSIEVPTTEAFLKPLDTAANADLYKCTHCTYTTNKKFLMSRHMKSHSDDRPYKCSICEKGFKTSASLVNHVNFHLGKKPHGCTYCDKAFTTSGELVRHVRYRHTGVKPHKCTECDYSSVEMSKLKRHMRCHTGERPYQCPHCTYASPDSFKLKRHLRTHTGEKPYECDICNARFTQSNSLKYHRLIHSVNEKPVFQCPMCPTTCGRKTDLRLHMQKLHSSDKTWPCNRCGKELPDRYSYKVHIKTHEGEKCFRCKLCPYASITQRHLDSHMLIHTDEKPFVCEICEVAFRQKQLLNRHVNLYHNEEYKPPSTREKVHVCPHCNRSFSFKGNLMRHMEVHDPFSRHESEKLKLKLGRMNRLKPDGTVIQYSTDDLSDGEQLSTDIIDTKATVEQEITSDEYMLYPEDDEQQGEIQYSIYDDFEADETLLDQKPIIKIENAIKGDQQQQAKQSSVLKNKDKFIDLQVNDGQNVVVIKVMHDDADDGIDENTEVDQEQDEEMVIDNMEQDNIKRPVFGDDKQYTHNNSFGFVEDDDDDNDDDDADDANEDNNKQVIELFHIAEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00747637;
90% Identity
iTF_00748395; iTF_00749867; iTF_00750640; iTF_00746879;
80% Identity
-