Gmor004920.1
Basic Information
- Insect
- Glossina morsitans
- Gene Symbol
- Cpsf160
- Assembly
- None
- Location
- scf7180000652158:1955465-1990984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0025 0.14 12.2 0.3 3 23 28 49 26 49 0.91 2 18 0.017 0.93 9.6 0.6 2 23 61 83 60 83 0.97 3 18 0.00087 0.047 13.6 6.0 1 23 90 113 90 113 0.93 4 18 1.3e-05 0.00072 19.4 0.8 1 23 119 141 119 141 0.98 5 18 0.00014 0.0077 16.1 1.3 1 23 147 170 147 170 0.97 6 18 0.064 3.5 7.8 0.1 6 23 656 673 656 673 0.97 7 18 0.029 1.6 8.9 4.0 1 23 679 701 679 701 0.98 8 18 0.00024 0.013 15.4 3.6 1 20 714 733 714 737 0.91 9 18 1.2 65 3.8 0.4 1 12 745 756 745 762 0.81 10 18 0.017 0.93 9.6 0.6 2 23 774 796 773 796 0.97 11 18 0.00087 0.047 13.6 6.0 1 23 803 826 803 826 0.93 12 18 1.3e-05 0.00072 19.4 0.8 1 23 832 854 832 854 0.98 13 18 0.00014 0.0077 16.1 1.3 1 23 860 883 860 883 0.97 14 18 2e-06 0.00011 21.9 1.2 1 23 971 994 971 994 0.92 15 18 0.012 0.66 10.0 1.2 2 23 1005 1027 1004 1027 0.96 16 18 0.00031 0.017 15.0 3.5 1 23 1034 1057 1034 1057 0.93 17 18 0.00015 0.0079 16.1 0.4 1 23 1063 1085 1063 1085 0.98 18 18 3e-05 0.0016 18.2 0.6 1 23 1091 1114 1091 1114 0.97
Sequence Information
- Coding Sequence
- ATGTTGGTGTGCAAATTACCGACAGATCGTAAATTGAAGGAACATTTGAAATACTCACATGATCCACAAAGTTCAGTTATATGTGATAAATGTGGCAAAACACTAAAGAGTGGTTACAGTCTTAAGAAGCATAACGAAATAGAACATTCGGATAAACCGAAGCCGCCACCCGAGCCCCAACAATGTGAAATATGTGGCACTTGGTTACGCCATTTGGCCGGACTTAAACAGCATATGAAGAGCTTACACGAAGACACTAACATTGAGCACCGTTGTCATATATGCAATAAAACCTCATCCACAGCCAGAGCTCTTCGAAGACATATCTATCATAATCACGAATGTGCCAGAAAATTCAAATGTACTCTTTGTGAGAAGGCATTTAAAAGGGCTCAGGATTTGAGAGAACATACATCAGTGCATACGGGCGAAGTGTTATATACCTGTCCTAATTGTCCGATGACATTCTTCTCGAATGCTAACATGTATAAGCATCGTCAGCGTTTACATCGTGCCGAATGGGAGGCTGATCGTAAGAAGCCTGTACCTCCTAATATTATGGGCCAAGCTAAGCAAGGCAGCAAACTAGTAAAACTAAAACGATCAATAGTCAATAACACCGCTGTTATAACACAATTTCCTAATACTGACATCTTACAATTTAAGCCTCCTTCTGAAAAGAAAGCAAAATCCTCAATACCGGGTGAGAAGTTTATTGATATATTTTCGGAAGAAGGTTTACGTTTGAATATAAGCAGTATTATAGATAAACATTTCTGGTTAAAGCCTAAGAGGAATTGTGCATCCATTCAGCAGGTATGCAGAAATTGTTGGAATATTATAAGAGATTTTCATGCTCTCTATGAGCGGGTGGTAGAAGCTCATCACCAATTGGAATCCAAAACCGTGGTTGTCGATGATCTGTTACCTCATGAATTGAAGCTGAAATCTGAGCGAATTCCTTGCAATGGTGAAAGAATTAAATTGGCAAATAACTTAGCCGACAACCTCTTTGATACGGAGGTTAAGGTTGAAGTTAATGATTTAGACCTACTTCCGCAAATCGAAATAATAGAAGAAATTCCAAATCTTAGCGAGCGATCTCTGCGAGCTTCAAGGCGGAATCGTCAGCATATGCATGACATACTATCAGATAAAGAAATGTGTAATAAACGTATTAAACGCGAGTTGTCTATCGAACTTGATATTGAGCCGAGTCATGATATATTTGCCGACACGGATATTCCTGCAACAGAATCTGCAAAGACTGATAACGAGAGTGTAATTAATAATTCCTTAAATGTTACTGTAGACGATAATGTACAAAACACAAATGTGGTGGTaaaaaaaCGGGGCAGGCCTCGTAAAACCGACTCAGACAAAGCAAAAGTTAAACTATCTGCTACAGCTGCTAAGGGTAATACGAAAAAGTCGCAACTACTAGAAGAGAAGAATATCAAAAACGAGCTATTGGATACTTTCGTGGAAGAAGATCAGACATCAATCCCAATTCCACTAGAGGAAAATATTAAATTTGAGCAAAAACCTGAACAAGAAGATAAAGATTATCTTAGTAACAATCTCGTTTCCAATGACGATTATGAGAATTTTGTGAATGATGACGACTCTGAGGACTCGTCCCAATCGACCAGTGATACAGACGATGACACGGATGCCAGTTGGCCGGAGGAGAAGCCTAATGACAAATATGCCATAATCTATCGAAAAGTAGCTGTAAAACCTAAAAAATATCGTAAACATCCCAAACCGTTAGTGCCTCCTAAGCGTATGAGCCGCGAAGAAATCGAAGCTCGTAATGCTCAACAAGCTGAATACGATACCGTTATTGCTAAATTCTACGATAACATGCGATGTCCGAAATGTCAACTGCTCGTACGTTGTTTTGGCGATATGCGAGCTCATTTTCGCATATCTCATAATGATGATCATGGCTTTGTAGAATGTTGCGGTCGAAGATTTATTACCCGTAAAACACTTGCAGAACATGTTTATGTGCATTGGAATCCCGATCATTTTAAATGTAGCAGCTGCAATAAAACGTGCCTAGACTCGAAGCAATTGGAAACACATGAGAATACCCATCTACCCAATCCGCGTCCGTCTAAATATAAGAAAACATTTCAGTGCGACAAGTGCCCGAAAACCTTCTCTTCAAAAGCGTCATTCGAACATCATTCCTTCGCCAAGCATGTCCCGAAAGAGGAATTCAAATTCGAATGCCCGGAATGCAAGAAAAATCTTAAGAAGCATAACGAAATAGAACATTCGGATAAACCGAAGCCGCCACCCGAGCCCCAACAATGTGAAATATGTGGCACTTGGTTACGCCATTTGGCCGGACTTAAACAGCATATGAAGAGCTTACACGAAGACACTAACATTGAGCACCGTTGTCATATATGCAATAAAACCTCATCCACAGCCAGAGCTCTTCGAAGACATATCTATCATAATCACGAATGTGCCAGAAAATTCAAATGTACTCTTTGTGAGAAGGCATTTAAAAGGGCTCAGGATTTGAGAGAACATACATCAGTGCATACGGGCGAAGTGTTATATACCTGTCCTAATTGTCCGATGACATTCTTCTCGAATGCTAACATGTATAAGCATCGTCAGCGTTTACATCGTGCCGAATGGGAGGCTGATCGTAAGAAGCCTGTACCTCCTAATATTATGGGCCAAGCTAAGCAAGGCAGCAAACTAGTAAAACTAAAACGATCAATAGTCAATAACACCGCTGTTATAACACAATTTCCTAATACTGACATCTTACAATTTAAGCCTCCTTCTGAAAGttttttttATAGCGGCTTCATTTTAAGAAGATTACCGACAGATCGTAAATTGCAGCAACATTTAAAAAATGATCATGATCCACAAAAACTATTTATATGTGATAAGTGCGGTAAAATTTTTAAAAATAGTTACAATTTaaaaaaaCACAATGACATGGAGCATACTGAAAGGAAATTAACGCCGGAACCGCAGCAATGCAAGCTTTGTGGTACATGGTATCGTCATTTGGCTGGGTTGAAAACGCACATGAAAAACATCCACGAGAACACAAGCAATGAACATCGTTGTCATATATGCAATAAAGTATCAACTACCGAGAGAGCTCTAAAGCGTCATATATACTTGAATCATAAGTGTGATCGTAAATTCAAATGTAGCATGTGTGCGAAAGCGTTTAAACGTGGCCAAGATTTGAGGGAACACATTTCGGTACATACGGGTGAAGCGTTGTACACTTGCCCCAATTGTCCAATGACTTTTGCGTCCAGCGCAAATATGTATAAACATAGGCAACGTTTGCACAAAACTGAATACGATGCAGATCGTCAACAAGCTATACCTCCGAATATCATAAAACAAGCAAAGACTGGTACAAGTAAAGTTCGTTCTTTTGGTGTATCTAATGCTGCTGCAAATTTTGCTCCCCCCACGTATGAGAATCCGCAAATAGTTCGTGTTGATTCCGATGCACGTTGTGCCGTGATGGATGTATATGGCAAACGTTTAGTTGTTTTATCAGTTCAAAAAGATAATAGGTTCGATGAAATTGAATTAGCGGACGTTAAACTGATTGAGAAGGCTCCAACGGCTATTATAGCTCGGACACTTATTTTGGCATCCTCTTTAATAGCTCTACGCGATCTTGATGATAAAATCGACAACGTTTTGGATGTGCAATTTTTGTATGAGAAAATCTTTAATGATAGCACGCAAAACTTGGTGTTGGAACGTTTCTTTCATCCTGGCAAAGATAAAGCAACTTTTTATATGACCCGCGATGATAAAGATATAATGGAATTACTTCAGTTCGCTGAAGCAGGACGCAGTTAG
- Protein Sequence
- MLVCKLPTDRKLKEHLKYSHDPQSSVICDKCGKTLKSGYSLKKHNEIEHSDKPKPPPEPQQCEICGTWLRHLAGLKQHMKSLHEDTNIEHRCHICNKTSSTARALRRHIYHNHECARKFKCTLCEKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPVPPNIMGQAKQGSKLVKLKRSIVNNTAVITQFPNTDILQFKPPSEKKAKSSIPGEKFIDIFSEEGLRLNISSIIDKHFWLKPKRNCASIQQVCRNCWNIIRDFHALYERVVEAHHQLESKTVVVDDLLPHELKLKSERIPCNGERIKLANNLADNLFDTEVKVEVNDLDLLPQIEIIEEIPNLSERSLRASRRNRQHMHDILSDKEMCNKRIKRELSIELDIEPSHDIFADTDIPATESAKTDNESVINNSLNVTVDDNVQNTNVVVKKRGRPRKTDSDKAKVKLSATAAKGNTKKSQLLEEKNIKNELLDTFVEEDQTSIPIPLEENIKFEQKPEQEDKDYLSNNLVSNDDYENFVNDDDSEDSSQSTSDTDDDTDASWPEEKPNDKYAIIYRKVAVKPKKYRKHPKPLVPPKRMSREEIEARNAQQAEYDTVIAKFYDNMRCPKCQLLVRCFGDMRAHFRISHNDDHGFVECCGRRFITRKTLAEHVYVHWNPDHFKCSSCNKTCLDSKQLETHENTHLPNPRPSKYKKTFQCDKCPKTFSSKASFEHHSFAKHVPKEEFKFECPECKKNLKKHNEIEHSDKPKPPPEPQQCEICGTWLRHLAGLKQHMKSLHEDTNIEHRCHICNKTSSTARALRRHIYHNHECARKFKCTLCEKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPVPPNIMGQAKQGSKLVKLKRSIVNNTAVITQFPNTDILQFKPPSESFFYSGFILRRLPTDRKLQQHLKNDHDPQKLFICDKCGKIFKNSYNLKKHNDMEHTERKLTPEPQQCKLCGTWYRHLAGLKTHMKNIHENTSNEHRCHICNKVSTTERALKRHIYLNHKCDRKFKCSMCAKAFKRGQDLREHISVHTGEALYTCPNCPMTFASSANMYKHRQRLHKTEYDADRQQAIPPNIIKQAKTGTSKVRSFGVSNAAANFAPPTYENPQIVRVDSDARCAVMDVYGKRLVVLSVQKDNRFDEIELADVKLIEKAPTAIIARTLILASSLIALRDLDDKIDNVLDVQFLYEKIFNDSTQNLVLERFFHPGKDKATFYMTRDDKDIMELLQFAEAGRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -