Basic Information

Gene Symbol
lov
Assembly
None
Location
scf7180000650699:93477-111489[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.7e-18 3.6e-15 54.9 0.0 1 44 823 866 823 867 0.96

Sequence Information

Coding Sequence
ATGTTAAAAGATTCGCCAGAAATCATTAAAAGACGCAAACAGTCGTCAACGACCGAGAACGGGCTGCAGCTGCGACCGGAGACATTTATGTCACCCGATATAACGCCATCGACAACGTATCCACTAAATATGGCTTTAGACCGTCAGTCGCCCGAAGTAGCTTTAGCCTTAACTACGACGTCGGTATCAAGTGCGTTGCCAACGATTAATACGAATTCTTCTTCAAATGCTTTAACAACCTTGCCTTCACTAACGCCTTCGACGATGGCAGCTTCGTTGCTTAATAATAATGTAACAACAACACCTACAGCTTCAATACCCGATCATTATAGCTTAAGATGGAATAATCATCAAAATCATATTATGAGAGCTTTCGATGCATTACTCCAAACGAAGACACTGGTAGACGTCACATTGGTGTGCGCAGAAACAAGTATCCGTGCTCATAAAATGGTTTTGTCTGCTTGCTCACCTTTCTTCCAGCGCGTTTTTGCCGATACTCCCTGCAAGCATCCCGTTATAGTCCTTAAAGATTTCCGTGGCTGGGTAATGCAGGCCATTATAGATTTCATGTACCGCGGGGAGATCAGTGTGCCGCAGCAAAGCCTCCAAATTTTAATGGAAGCTGGCGAGTCATTGCAAATACGTGGCTTAGTTGAAAGTTCTATACCAGAACATACACCCACGCCCGCCGCTTCCCCTGACGATTTCGGTATGATCGACGCTTCACTGCTCAGCTCGGAATTGGAAAGACGTTCCAGCTTTGACGAGGAATCACCTTCCATGGTTACCTCAGCTTCGAAAATCATACTACCATCGCGGTTATTTAGTGCTTCCAAACGCCGTGAAAAAGAGCGGAAAAGAGaaaaaaaGGAACGTACTCTAGACCACGAAATGGATCATAGTGATCACGAGTTCACGCCTGAGGCTTTGGTACACAATGAAAAGTGCACTTCGCCCATACCTAGACGTAAGCAAGCGAGACCTCGTCGGCGCTCGAGCGACATGCCTCAAGACGTACATAGTCAGTCAAATTCACCTGCCCCCAAAGATTGCAGAATAGAATCGGAGAAAAACGATGAGCCAACTGAATTAGCGTTTAATCCATGCAATGCGTCAATGGAAGCTATAAAAACTGTGATTAAATCCGAACAACTAGAACCTATGGAAGAAGACGAAGTAGGCGAAACAGAAGAGAGGGGTGTCAGTCGAAGTCAAGAAGAAACCGAGATCCGGACGAATGAAGTGGACAGCGGCCATGGAAACGATAGTCGCGAAAATAGTGAAGAGGCCCAGCAAGAGAAAACTCGTGGAGAACAAGACTTTCACGAGTTTGGCTCAGAAATCAACAGGCAAGACGATTTAACGAACACTGGCGATTTAGATGATGACGCCgaagagcaagaagaagaggaagaacgcgaagaagaagaggatctagaagaTTTAATTTTGAATTCAAATGAATTAAATAGACGAAGGAAATCAACTATGTCCCTAAACTCGGAAGGTCCTGAAGACTTATGCACAACGAAAAAAGACAACGATACCAGCGGTAACCATTCAGCGTCCGACAACGACGACAGCCCGCTAAACAATAATGATAGTAGCAAATTAAataacaatcatagcaatcataataatcGAGTTGTATTATCCTTAAAGGATATACGTCAGCTAAACAAGCCTCCATCGTCGTCTACACCTAACTCGAGCAACAACAATATGCATCCGTTTACGGGATCAGGTATAAGAGATTTACGCTTAGATCGTGCTTCTATGGAGAACCAATGTAAAATGGAAGCCTTAGAAGCCCAGATgcaagcagcagcagcagccgcagcggcagcagctgcagcTAGTGGAAAAAATCCTTTCCACGAAATGGAACATCAAATGGACTTGTCCTTGGCGGCAGCAGCGGCCGCAGCAGCTGTCTCCCATCAACACTCCCGAGAAAGAGACCAAGCCTTGCAAAGAGAGCAACGCGAATTGCAACAACAACATAATGCTTATGCGAACAGCATACTGAATCAGATGGGTATGCCAAGCATGGCCCCTTTTGGGCCGGGTTCGACTGGTCCACCGCTCGGACCAGGTGGACAAGCGCCTCATGAACGATTAGAGGAGAGTATGAACCGTTTGAGTAAAGAATTCGGACCCAGTTCACCAATGAGCCTGCCTCCACATTATAATCCACAGGAAGGACCGCCACATCCACCTTCGCCGCTGCCCTTTCCCGGTATGTCAACGGCGTTAACTTTAACGCCGCCGCACATGTTCGGCCTTGATTCACCATTGGGTCTTTTTCCGCCTGGTATCGACCCAGGTAAACTCTACAACCCCTTAATGGAAATGTCTGATCCGAGGGGTATGCCGAGTGATCCACCGCCCTTTCTAAAAAAGAAAATGCCTAGACCAAAAGGGCAGCATTCAGCGCCTAGGGGCGGTCCACCGCGTTCCTGGACTAATGCTGAGCTAACGGAAGCTTTACAGCACGTATGGAATAAGAAAATGACAACTTCTCAGGCTTCGCGCATCTTCGGCATACCTTACAACTCTTTGCTGATGTACGTGCGCGGCAAATATGGAAAAAGTCTAAAGCTTGAGCAGCTACGCAAAGACTGTATTAGTGGTCCACCGTTGGAATTACTGCAAATGGGTGCAAGTGGAGGTAAAAATTCTGGGGAAACTAGAGAGCAGCGGGAGGCGCGCAAAGAAGCCCAACGTAATGCCGCCGCTAATGCAGCCGCTGAATTAGATTTAGCAGCCGGTTTAGCGACTGGACAAGCCAGCGGTCCCCATAACGCTAACTCTGAAGCTGATTTGCTGGGCGGCCCTAATGCTTTATTCAATCCTTTTAATCCTCAAGGATTTTACCCCGATTTTCCGGGAGGTTTTCCTGGCTTACCGTTAAGCATGTTGAATCTCTTACCACCCGCAGACAGATCACAACACAGTGGCGTAATGCATCACGGCCTAGGAATGGATGAAGATTGCAAATCCGATCGCTCTAAGCAATCGTCATCTTTGGATGACGAATTTGCGGCGGCAGCCCAATCTTTAGCAATGCAACGACCACCTGAAGAAAGACGTCACGGCGATCTAATGGCCAATAATGCGACAAATAATAATTCAAATTCTGCTTCCAATTCACAGGCTAATGGCGGTGGTGGTGCGGGGGGACAGCAAGATTGA
Protein Sequence
MLKDSPEIIKRRKQSSTTENGLQLRPETFMSPDITPSTTYPLNMALDRQSPEVALALTTTSVSSALPTINTNSSSNALTTLPSLTPSTMAASLLNNNVTTTPTASIPDHYSLRWNNHQNHIMRAFDALLQTKTLVDVTLVCAETSIRAHKMVLSACSPFFQRVFADTPCKHPVIVLKDFRGWVMQAIIDFMYRGEISVPQQSLQILMEAGESLQIRGLVESSIPEHTPTPAASPDDFGMIDASLLSSELERRSSFDEESPSMVTSASKIILPSRLFSASKRREKERKREKKERTLDHEMDHSDHEFTPEALVHNEKCTSPIPRRKQARPRRRSSDMPQDVHSQSNSPAPKDCRIESEKNDEPTELAFNPCNASMEAIKTVIKSEQLEPMEEDEVGETEERGVSRSQEETEIRTNEVDSGHGNDSRENSEEAQQEKTRGEQDFHEFGSEINRQDDLTNTGDLDDDAEEQEEEEEREEEEDLEDLILNSNELNRRRKSTMSLNSEGPEDLCTTKKDNDTSGNHSASDNDDSPLNNNDSSKLNNNHSNHNNRVVLSLKDIRQLNKPPSSSTPNSSNNNMHPFTGSGIRDLRLDRASMENQCKMEALEAQMQAAAAAAAAAAAASGKNPFHEMEHQMDLSLAAAAAAAAVSHQHSRERDQALQREQRELQQQHNAYANSILNQMGMPSMAPFGPGSTGPPLGPGGQAPHERLEESMNRLSKEFGPSSPMSLPPHYNPQEGPPHPPSPLPFPGMSTALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRGMPSDPPPFLKKKMPRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPLELLQMGASGGKNSGETREQREARKEAQRNAAANAAAELDLAAGLATGQASGPHNANSEADLLGGPNALFNPFNPQGFYPDFPGGFPGLPLSMLNLLPPADRSQHSGVMHHGLGMDEDCKSDRSKQSSSLDDEFAAAAQSLAMQRPPEERRHGDLMANNATNNNSNSASNSQANGGGGAGGQQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2