Gfus014114.1
Basic Information
- Insect
- Glossina fuscipes
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold135:616605-621195[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.087 7 7.5 1.7 1 20 737 756 737 758 0.93 2 8 0.00077 0.062 13.9 1.3 1 23 1080 1103 1080 1103 0.97 3 8 0.00024 0.019 15.5 6.6 1 23 1124 1146 1124 1146 0.97 4 8 5.7e-05 0.0046 17.5 3.0 1 23 1152 1174 1152 1174 0.97 5 8 3.2e-05 0.0026 18.3 0.5 1 23 1180 1202 1180 1202 0.98 6 8 0.0042 0.34 11.6 1.8 1 23 1208 1230 1208 1230 0.97 7 8 0.00021 0.017 15.7 0.3 2 23 1237 1258 1236 1258 0.96 8 8 0.0001 0.0083 16.7 6.1 1 23 1264 1286 1264 1287 0.96
Sequence Information
- Coding Sequence
- atgataacattggccaagaagcaagCTTATCGTAGTAACGATCATAATGATGATCAAGCAACAAGTTCTTATATTTATAAGAATGATCACATAAAGTGTGGCGAAGTATTCACGTGGCTATGTGAAGGCGAGTTTTTTGCTGTCGAATGCCATTTATGCGAAGACCGTCCTTTATGCCCCCTAACCGAGTACGCTCAACATATGGAAGTATGGCATATAGAATGTGGCGAAGTCTGGTTGGGAGGATGCAGAATATTGACGGCTAAAAATAACGAAACAGAGAAAGAAACCTATGAGGAAATAGACGACTCCCAAGCTGGCGATAGCATTTGTGAACACGAAGGACGCGAAAATCTCATAAGTAATTTAGAAGAGCAAACTTTGGAACCGTTCGAACAAGTTCTTATCGAGGAAGACTTGTACGATCCACACACAACATACGCGCAACATACACAAGAAGAAGATGTTAACATAACACCATTAATAAACGCACGTTACAATGGCAAATGtgagacaaaaactagagaaaaaaaatcgagaaaaaatctgagaaaaacacaaaactttattaacaaagaaaaTGAGCAGCGACCACAACGGCAACTGTTGGTAAAGTTTGCAAACACAAAACGGGCTAACaaaaaaaaTTGGACAAAGAAGATCACGTGTAAAACAAACAACTTGAATCCGTACCGGCTAACGTACTGCAGGAGAAGACTTCAACGCAATGAGTTACAATCGAATGAAAAAAGCTTTGACAATTTTTGTTTACGGAAAAAACTGCTTGGAAACAATATCAAATTAAGTGAACGTCTGTTTAAACGAAGATATAGCGGACGAAAGAAATGCAAAAAATTAAATAAAACGAATGCGACTGATTACCGAAAACAACATCAACTGGCAAAAGATGCGCAAACCAATCAAAAGATAAACTCTCTGCCAGAAGCAGAGATCTATCTAAGCGATCGAAATAGCGCGGAAAGCTCGATCTTgaagagagaagaagaagaagaagaagaagaagaagaTGATGTAGCTAATACGCACAACTACGAAAGATACGATGAGATGAGTAACGCGCATAACTTAATTTCTGAAAACGTAAAGGAACAGTCTAAAGACACCTTCACCAAATTATTTGAACTAGTTATTGAAGAGAGTGAAGAAGACGATACTCAAAAGAACGACATTTCAGAGTCGATTGAAAAAATCTTCAACAAATCCGAAAGCTCGGTTaaaaacgcagtaaataggcagtgtcttaaaaattcggaaaacattgaaaattggaaaaatgaaaaacgtattccgaattgggaaaaaatcaatgccatagaaaaaacggcggacgaaaaTCAGTTAATGTGTGTAGAAAATTTGAATCAATCTAAGAATGGCGCGGAAAATGAGCAAAATGTACAAGAAAAATGTAAAGAACATTTTAGAGAGACACGTCGTCATCGAGGGAATGAGCCAACAGATGAGGTAATGCGACGACGCTCATCATCCTCTCATTCGCTTGCATTTTCATCATGTTCGCTCAACAGGCAATTTCAATATCACCGGCCTCAGGTGAAAGTTACGAGTGAGCAATTCGGTCAACTTATTGCGCTTTATCGCGATGCTCCCTGTCTGTGGGATCAATCTGATCCTCAATTCTGCGACGCGCATCATTGCAAACAAGTATGGCAGAGAATCACTGCAGCTTGGAATAAATCTTGCAAGCGTCACTTCTCCACGACCAATATACGTATGCGTATATGGAACTTGTGTCGGCGTTATCTGAAAGCGAAGGAACGCTACCAACTAAAAGACGAATTGGCTGACACTAGCGCATTTCCCCATTACAAACAAATGCAGTTTTTAGATAATCAAAAACCTGTACAAAAACGCAAGCAATTCTATGAAAAACAAAACTCAATAATTTTGAATATATATCGACATTTCCCTTTACTTTGGCACATACGTTACTATAAGGTAAAATGTTCGAGGCAGAGACAGCAAGCTTGGTTGGGTATTAGGAGCGCTCTCAAATTCTATGGCCATGATTTATCTCTAAGCGTGATACAAAAGAGGATACGTTCACTGCGTAGGTGTTACCGCAAGGAGAAAATACGTTTTCTCCGTTCACCCAACGAAAAGGCTGAATTTCACGCAATATTCAAACATTACAAAGAAATGATGTTTTTAAATGCGCACACTAAGCCGTTCGAATGTCGAACTTGTAAGCGAACTTTTGAGAATTTACTCAATTATAAATTACACTTTAATAACGAAGGCAATGGTAAGTGCTGTGTAGAGGCCAAGCAAGAATCGAAGCCTCTCGAAAGCTATGACATATGTCATAGGAAGAAAAATGAAGATTTAATAGTATTCTCTCCACGTTGCCCAGACGAAACAGAAGTATCGAGTTTATCCAGTGATGTTCAAAACAGGATATTGAAAAACTCCACCAAAGGTGCTATAGAAAGTACCATCGAATTCTCGCTAATTGCCAAAGACGATCGAAAGGAATCTTACACTTTCCAAGACGTTAAAGTATTAAAACCACCACCAACACCGGACGATTCTCTTTTCCAACGTAAAAACAGCTCAAACATACGATTAACTGAATCAGAAGTTCACCATTTGATTGCTTTGTATCAACAACTACCACAACTTTGGAATCCAAATCATTTAGATTACAATTCCCGAAATTTGAAACGTCAGGCATGGCAAACGCTCTGTACTCAACTCAATAATTTTACGTCCAAAAATTATAGCTGGAAAACTGTCTATCGCAAAGTGTTAGACTACGTTAAATATTATAACCGTGAAAAAGGACTAATCAGAAAAATGCATAAAAAATCTATAAATAGATGGACGTTTTATAAAGATTTCAAATTTTTGGATGAAGTGCGTAGCCATGAGATGTCTTCACCTGTACAATATAAGGATAGTAATATAAAAATTATTTTTATTTATAAAACCCTGCCTCAGTTGTGGGATACTACGCATCCAAATTATAACAAGCATAATAATAAGCAACGTAGTTTGGAAATTTTATGCAATCGCTTGCAAGAAGAATGCCAAGTGCAACTGACGCCAGAGCGCGTTAAACAGCGCTTAACGGACTTGAAATGCCAATATCGATTGGCCAAAAAACAGCAACTAGATGCCTCGAAACAGGAAATATCATTCCGAACCGATTTTGAATATTATGAGTATATGACATTTCTGGATCGACATGTGGCGCCATTTATATGCGATATATGTCAAATTGAATTTAAACGCTTCAAAGATTTCAGTTTGCATCAAAGACGGGAACATGAAAAATATAAACGGGAACGTAAACAAGTTATGCCCTTAACCCCCTCTGAAGAATCGGAACACGTATGTCACATTTGCGGTTTTACGTTTACATTGCGTCATAATCTGCGCTTACATCTTCAACGACATGAGGGCATACGAAACCATCCTTGTTCCTTCTGCCCTAAGAGATTTTACAATTCTTATTCACTGAAAGTGCATGAACGCTCCCATACAAAAGAGTATCCATTCACATGCGAGAAATGCGGTCAGCGATTTGCAATAGCTAGCAAATTAAATTTACATATAAAACGGCATTCAGGTAAATGTGAATATGCTTGCGGTCATTGTTCGAAATCATTTTATACGGCCTTTGAGAGAGATCGACATGTTCGCTGGCATTTAAATATACGAGATAAGGTTTGTCCGACTTGCGGGAAAACATTTGTCTCCGGTTCTTCGTATTACACACATTTAATGTTGCATAAGGAAGTCAAACGTTATGTTTGCGATAAATGCGACAAACGTTTCGCTCAACATTCTGGTTTATATAAACATaaaaaaaGACATCACCAATAG
- Protein Sequence
- MITLAKKQAYRSNDHNDDQATSSYIYKNDHIKCGEVFTWLCEGEFFAVECHLCEDRPLCPLTEYAQHMEVWHIECGEVWLGGCRILTAKNNETEKETYEEIDDSQAGDSICEHEGRENLISNLEEQTLEPFEQVLIEEDLYDPHTTYAQHTQEEDVNITPLINARYNGKCETKTREKKSRKNLRKTQNFINKENEQRPQRQLLVKFANTKRANKKNWTKKITCKTNNLNPYRLTYCRRRLQRNELQSNEKSFDNFCLRKKLLGNNIKLSERLFKRRYSGRKKCKKLNKTNATDYRKQHQLAKDAQTNQKINSLPEAEIYLSDRNSAESSILKREEEEEEEEEDDVANTHNYERYDEMSNAHNLISENVKEQSKDTFTKLFELVIEESEEDDTQKNDISESIEKIFNKSESSVKNAVNRQCLKNSENIENWKNEKRIPNWEKINAIEKTADENQLMCVENLNQSKNGAENEQNVQEKCKEHFRETRRHRGNEPTDEVMRRRSSSSHSLAFSSCSLNRQFQYHRPQVKVTSEQFGQLIALYRDAPCLWDQSDPQFCDAHHCKQVWQRITAAWNKSCKRHFSTTNIRMRIWNLCRRYLKAKERYQLKDELADTSAFPHYKQMQFLDNQKPVQKRKQFYEKQNSIILNIYRHFPLLWHIRYYKVKCSRQRQQAWLGIRSALKFYGHDLSLSVIQKRIRSLRRCYRKEKIRFLRSPNEKAEFHAIFKHYKEMMFLNAHTKPFECRTCKRTFENLLNYKLHFNNEGNGKCCVEAKQESKPLESYDICHRKKNEDLIVFSPRCPDETEVSSLSSDVQNRILKNSTKGAIESTIEFSLIAKDDRKESYTFQDVKVLKPPPTPDDSLFQRKNSSNIRLTESEVHHLIALYQQLPQLWNPNHLDYNSRNLKRQAWQTLCTQLNNFTSKNYSWKTVYRKVLDYVKYYNREKGLIRKMHKKSINRWTFYKDFKFLDEVRSHEMSSPVQYKDSNIKIIFIYKTLPQLWDTTHPNYNKHNNKQRSLEILCNRLQEECQVQLTPERVKQRLTDLKCQYRLAKKQQLDASKQEISFRTDFEYYEYMTFLDRHVAPFICDICQIEFKRFKDFSLHQRREHEKYKRERKQVMPLTPSEESEHVCHICGFTFTLRHNLRLHLQRHEGIRNHPCSFCPKRFYNSYSLKVHERSHTKEYPFTCEKCGQRFAIASKLNLHIKRHSGKCEYACGHCSKSFYTAFERDRHVRWHLNIRDKVCPTCGKTFVSGSSYYTHLMLHKEVKRYVCDKCDKRFAQHSGLYKHKKRHHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00750776; iTF_00749986;
- 90% Identity
- iTF_00750776;
- 80% Identity
- -