Basic Information

Insect: Glossina fuscipes
Gene Symbol: salm
Assembly: None
Location: Scaffold388:179209-206189[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.6e-06 0.00037 20.9 0.9 1 23 524 546 524 546 0.98

2 7 9e-06 0.00073 20.0 2.1 1 23 552 574 552 574 0.98

3 7 0.015 1.2 9.8 1.5 2 23 935 956 934 956 0.98

4 7 6.5e-08 5.2e-06 26.7 0.5 1 23 962 984 962 984 0.98

5 7 0.0002 0.016 15.8 2.3 1 23 994 1016 994 1016 0.98

6 7 0.026 2.1 9.1 2.9 2 23 1418 1439 1417 1439 0.97

7 7 2.5e-08 2e-06 28.0 1.3 1 23 1445 1467 1445 1467 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.6e-06	0.00037	20.9	0.9	1	23	524	546	524	546	0.98
2	7	9e-06	0.00073	20.0	2.1	1	23	552	574	552	574	0.98
3	7	0.015	1.2	9.8	1.5	2	23	935	956	934	956	0.98
4	7	6.5e-08	5.2e-06	26.7	0.5	1	23	962	984	962	984	0.98
5	7	0.0002	0.016	15.8	2.3	1	23	994	1016	994	1016	0.98
6	7	0.026	2.1	9.1	2.9	2	23	1418	1439	1417	1439	0.97
7	7	2.5e-08	2e-06	28.0	1.3	1	23	1445	1467	1445	1467	0.99

Sequence Information

Coding Sequence: ATGAAAAATATTTTGTCAACTGTTTTGTGTGAAATGAGAAGTGATTTTAAAGATAGTCATCAAGAAACCATCAATAAAATGATACAATTTGGTACCGTCAAGTATGGTATTGTTAAGCAATTAAAAGATCGGGCTAAAAGTACAGATAAAGATAACGTTAGTGATCAGGAAGAAAATGGCGCTTGTTCGCCCATAGCTGCTGTACCTGCAGTGAACGATGAAAACTCACGTAATGACAATATAACCGATTTAACTTGTGCTGAAGAAAACCTCAATGATAATTCCGCAGAAGCTAATGTCAACAGTGATATACAGTGTTCTTCGCTTGATGCCCCCGAAAATCAAAACCACGTCAATAACATTGTAATGTCTGAGGTTGAACAGCAGCTACTGCAAGTGCAATCTCCTAAATCCGAACCAGAATATAACGAAATAAGTGCTGTTACACAACAACAGCGATCTTCAGACATAGATTCTAGTTTAAACCTGAAACCTTCTTCCCCCATCATATCTGATTTGCATAAATGCAAAGAGCCTTTGAATAAGCTTCAAGGCAGTAGTGAAGAATTAGCTGAATTGCAAGCTCAAGATACTGAAGCCGACGTCATGTGTCATACAAGAACGTCTACTCAGGCACAAGATGCGACTGAAAAGACTTCCGCGGAACAAGTCGAAGACGAGGATATATCGGATAATCGTGATAAATTAGAAAGCAAGGATACTGAAGTAGACGCTCCTCAAAGTGACACGTCTCCTAGTACGCCATCTTTACAAGCCAATTTACCTGCTGGATTGCCACCGCAATTTGGTGCTACGCCAGTTACATTAGAAGCTATCCAGAATATGCAAATGGCCATTGCTCAGTTCGCTGCCAAAACTATTGCAAATGGGGCTTCTGGTCAAGACAATGAAGCGGCCATGAAGCAGTTGGCTTTCCTGCAACAGACTTTATTTAATTTGCAACAACAGCAATTATTTCAAATTCAGTTAATTCAACAGTTGCAATCACAGTTGGCGATGAACCAAAGTAAGGGGAGTGAAAATGTTGCTGATGAAGTAGATGATGAAGAGGAAGAGGAGCGTGAAAATGGGGAAGAAGACACCTACGAAGAAGAAGAGCGTATCGCTCAACTGGAATTGCGTCAAAAGGCCGAGGCTCGTATGGCGGAAGATAAAGCGCGACAGCATTTGATTAATGCTGGAATTCCATTAGAATCCCTAAAACGTAAGCGTGAAATTGATGGCGAAGTGCAAGATGACGAGAGACCTGCAAATCGCCGCATAAGTATTGACGGCGATATTAAAGGTGTAGGGTCTACTATGGACTCTTTAATGAAATTTAAGGATATCGAAAACCGGCCTTTGCCGTTTGGTTCGGATTTAGCTTCATCCATTATTACGAATCATGATGACTTACCTGAACCGAACTCCTTGGAAATGCTGCAGAAGAGAGCTCAGGAAGTTTTAGACTCGGCGTCACAAGGCATCCTGGCCAATAATATGGCTGATGATTTTGCTTTCAAAGATAAAAATGGTGATGGTAAAAATCGTAATGAACCGTTTTTCAAACATAGATGTCGCTACTGTGGTAAAGTTTTCGGGTCCGACTCAGCTCTGCAAATTCATATACGTTCCCATACCGGCGAGAGGCCGTTCAAGTGCAATGTTTGTGGTAGTCGCTTTACCACCAAAGGCAATCTGAAAGTTCATTTCCAGAGACATGCTCATAAATTTCCCCATGTTCCCATGAACGCTACTCCTATACCGGAACACTTAGATAAATTTCATCCCCCTCTGCTAGACCAAATGTCGCCGGATAGTTCGCCATCTCATACACCAGCAGCTATGCCACAACAAATGCCCAGTCAAGTGCCCCCAGTATCTTTGCCGCTTACCTTTCCAAGTTCATCAAGTACATTTCCAAGCCTACCGGGTCTGTATAGACCGCCAATGGAAATCCTTAAGTCGTTAAGTTCTACAGGTACGTCGGGATTTCACAATCCATTTTTTCCTCAAATACCACCAAGCCTCAGTGAAGGAAGTGCGGTAGCTGCAGCAGCTGTGCAAGCTCAGGCTGCGGCCCAAGCTGCACTACGTAAAAATCTTCAAGAAACACCCACTGATTTAAGTAAGAGTTTAGCGCCTAAGTCGCCCGAATTGGCTAAAGTTAAAACAGAAGCTTTGACTGAGAAAGAAGACAACGCAGAAAAAAGTGACTCACAAGCTGATATGGAAGTGGAAGATGATAAGTCGCCTTCTTTGGCAGTGAAAATAAAGGAAGAAAAAATAGAGTGCGAAACGGAAAGTCCGAAAAATGACCAAATAATTAGTCCCCGACCTGCCTCAACTGTATGTCCCTTAGAAGAAATAAGTTCTCATGTACCTAATACCCCGCCTACATCCATCACTAAATCACAATCCTTGCCGCCGGTAGTGCAACCTATACAGCCGCCTACAATTATGCATCCTCAACCATCGCCGGGATCACACAATCACTTAGATCATCTACCTACGCCAGGCCAATTACCTCCATCAATGCATCATAGAGACGATTTCTTTATAGAGAGATTTCCATTAAATTTTACAAAGACTCTGTCACCGGAAAGGCATTCGCCCATAAGATCACCTGCTCACATGCCTCGGGCGCCTTTCTTCAATCCCATGAAACCTCATGATATGGCTTTACTACCACGCCCGCATAGCAATGATAATTCTTGGGAGAACTTTATTGAAATTTCCAATTCTTCGGAAACAATGAAGCTGAAAGAATTAATGAAGAACaaaaaaaTCACGGATCCCAACCAATGTGTGGTATGTGATCGGGTCCTCTCATGTAAGAGTGCGCTGCAAATGCATTATCGCACTCACACTGGCGAAAGACCTTTTAAATGCCGTATTTGTGGGCGAGCCTTTACAACAAAAGGCAACTTAAAGACTCACATGGCTGTGCATAAAATAAGGCCCCCTATGCGTAATTTTCATCAGTGTCCCGTGTGTCACAAGAAATACTCGAATGCACTGGTTTTACAGCAACATATACGTTTGCACACGGGGGAGCCAACTGATTTGACTCCCGAACAAATACAAGCAGCGGAAATTCGTGATCCTCCACCCTCAATGATGCCTGGAGCTTTCATGAATCCTTTTGCGGCGGCTGCATTTCATTTTGGCATGCCGGGACCTCCAGGTCTGGCACCAATGGGTGTACCCCACAATGGCACCTTAGGTTCTGAATCGTCGCAAGGTGACATGGATGATCAAATGGATTGCGAAAATGATTTTGATGACGACATCTCCTCGGAGCATATGTCCAATAGTAACGATATGGAGAGCAGTGAAAGACCGAAATCAGGAGACGATTTCAAAGGCTTATTATTTGAGCAAAAGCTGAGAATTGATTCGGCAGGCGTGGTAAATACAAATCCTAGACCACATTCAGTCACCAGCGAGGCAAATTCAGTTAGTTCTGCTTCAACTAGCCCCAACAATGCAATGAGTAAACATCCGGTTTCGTTAAGGTCAAGTTCACCGGTGCGATCAGCTCTTGAAAGTTCACATGGAGCTTTAGACTTGACACCACGTCCGGGACCTTCTTCAGCTAATAGCAGCATTACTGCACGCTCGCCGTTACCTGCAATGACTAACAAACGGTCTCCTTCGCCACTTACTAGCAGCAATGTTAAGAGTCCCAAATTGCCACAAATTAGTCCCACGACAATGCCTCCCACCGGTGCAGTTGATTGTTTACCACCTAGCTTACATCATCACCTACAACAACAACATCATCTAATTCAACAGCAAGCTGCTTTAGCTGCTGCCCAACATCATCAACAAATGCAACATAATGCTGTTGTGGCCATGCATCAAGAACAAATGCGTCGTGAGGCAgctcaagctcatgctcatgctcatgctcacgctcacgctcatgctcatgcGCAAGCGCAAGTACAGCAATCGATACAATCTCCTCGTCAAACACCTGTTAATATAGTAACGTCAGTACAATCAACACCGCAACAAAATCAACAACAGCCAGTGAACGTAACAACGGCATCACCTCAGGCCCCGCAACCACCAAATCCATTATTAGCCGCGCCACGACCGCCATTTGGCATGTTTCCCAATCTCCCGCTGTTTCCACCGGCTTCTACGCAGAATATGTGCACAGCGATGAACACGATAGCGCAGTCTGTTATGCCAGCGTCACCATTCAATCCTCTAGCACTACCAGGCGTTAGAGGTAGCACTACCTGCGGCATTTGCTATAAAACATTCCCCTGCCATTCAGCCTTGGAAATCCATTATAGAAGTCACACCAAGGAAAGACCATTCAAATGTAACATCTGTGATCGTGGCTTTACTACTAAGGGCAATCTTAAGCAGCACATGCTGACCCATAAGATACGTGACATGGAACAAGAAACTTTTCGTAATAGAGCAGTGAAGTATATGAGTGGTGGCTGTAAAGAAGATTGA
Protein Sequence: MKNILSTVLCEMRSDFKDSHQETINKMIQFGTVKYGIVKQLKDRAKSTDKDNVSDQEENGACSPIAAVPAVNDENSRNDNITDLTCAEENLNDNSAEANVNSDIQCSSLDAPENQNHVNNIVMSEVEQQLLQVQSPKSEPEYNEISAVTQQQRSSDIDSSLNLKPSSPIISDLHKCKEPLNKLQGSSEELAELQAQDTEADVMCHTRTSTQAQDATEKTSAEQVEDEDISDNRDKLESKDTEVDAPQSDTSPSTPSLQANLPAGLPPQFGATPVTLEAIQNMQMAIAQFAAKTIANGASGQDNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLAMNQSKGSENVADEVDDEEEEERENGEEDTYEEEERIAQLELRQKAEARMAEDKARQHLINAGIPLESLKRKREIDGEVQDDERPANRRISIDGDIKGVGSTMDSLMKFKDIENRPLPFGSDLASSIITNHDDLPEPNSLEMLQKRAQEVLDSASQGILANNMADDFAFKDKNGDGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAHKFPHVPMNATPIPEHLDKFHPPLLDQMSPDSSPSHTPAAMPQQMPSQVPPVSLPLTFPSSSSTFPSLPGLYRPPMEILKSLSSTGTSGFHNPFFPQIPPSLSEGSAVAAAAVQAQAAAQAALRKNLQETPTDLSKSLAPKSPELAKVKTEALTEKEDNAEKSDSQADMEVEDDKSPSLAVKIKEEKIECETESPKNDQIISPRPASTVCPLEEISSHVPNTPPTSITKSQSLPPVVQPIQPPTIMHPQPSPGSHNHLDHLPTPGQLPPSMHHRDDFFIERFPLNFTKTLSPERHSPIRSPAHMPRAPFFNPMKPHDMALLPRPHSNDNSWENFIEISNSSETMKLKELMKNKKITDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGAFMNPFAAAAFHFGMPGPPGLAPMGVPHNGTLGSESSQGDMDDQMDCENDFDDDISSEHMSNSNDMESSERPKSGDDFKGLLFEQKLRIDSAGVVNTNPRPHSVTSEANSVSSASTSPNNAMSKHPVSLRSSSPVRSALESSHGALDLTPRPGPSSANSSITARSPLPAMTNKRSPSPLTSSNVKSPKLPQISPTTMPPTGAVDCLPPSLHHHLQQQHHLIQQQAALAAAQHHQQMQHNAVVAMHQEQMRREAAQAHAHAHAHAHAHAHAQAQVQQSIQSPRQTPVNIVTSVQSTPQQNQQQPVNVTTASPQAPQPPNPLLAAPRPPFGMFPNLPLFPPASTQNMCTAMNTIAQSVMPASPFNPLALPGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMSGGCKED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00750691;
90% Identity: iTF_00750691;
80% Identity: -