Gfus006536.1
Basic Information
- Insect
- Glossina fuscipes
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold256:9445-16542[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.051 4.1 8.2 0.1 6 23 437 454 437 454 0.97 2 14 0.023 1.8 9.3 4.0 1 23 460 482 460 482 0.98 3 14 0.00019 0.015 15.8 3.6 1 20 495 514 495 518 0.91 4 14 0.0022 0.18 12.5 1.0 1 23 526 549 526 549 0.96 5 14 0.002 0.16 12.6 0.3 3 23 557 578 555 578 0.91 6 14 0.0045 0.36 11.5 0.9 2 23 590 612 589 612 0.97 7 14 0.00069 0.055 14.1 6.0 1 23 619 642 619 642 0.93 8 14 1e-05 0.00084 19.8 0.8 1 23 648 670 648 670 0.98 9 14 0.00011 0.009 16.6 1.3 1 23 676 699 676 699 0.97 10 14 1.7e-06 0.00013 22.3 1.1 1 23 785 808 785 808 0.92 11 14 0.0096 0.77 10.5 1.2 2 23 819 841 818 841 0.96 12 14 0.00032 0.026 15.1 1.7 1 23 848 871 848 871 0.93 13 14 3e-05 0.0024 18.3 0.7 1 23 877 899 877 899 0.98 14 14 2.4e-05 0.0019 18.7 0.6 1 23 905 928 905 928 0.97
Sequence Information
- Coding Sequence
- ATGTTTTGTATTTTGTGCTTAGAAAAAGCGAATTCCTCAATACCGGGTGAGAAGTTTATTGATATATTTTCGGAAGAAGGTTTGCGTTTGAATATAAGCAGTATTATAGATAAACATTTCTGGTTAAAGCCTAAAAGGAATTGTGCATCCATTCAGCAGGTATGCAGGAATTGTTGGAATGTTATAAGAGATTTTCATGCTCTGTATGTGCGGGTAGTAGAAGCTCATCACCAATTGGAATCGAAAACCGTGATTGTCGACGATCTGTTACCTCATGAGTTGAAACTGAAATCTGAGCGAATTTCTTGTACTGATGAAACAATTAAATTGGCAAATAATTTAGCCGAAAACATCTTTGATACGGAGGTTAAGGTTGAAGTTAATGATTTAGACCTACTTCCACAAATCGAAATAATAGAAGAAATTCCAAACCTAAGTGAGCGATCTCTGCGCGCTTCAAGACGGAATCGTCAGCAAATGCATGACATATTATCAGATAAAGAAACGTGTAATAAACGTATTAAACGCGAGTTGTCTATTGAACTTAATATTGAGCCCAGCCACGATATATTTGCCGACACGGATCTTCCTGCAACAGAATCTGCAAAGACTGATAACGACAGTGTAATTAATAATTCCTTAAATGTTATTGTAGACGATAATGTACAAAACACAAATGTTATGGTAAAAAAGCGAGGTAGGCCTCGTAAAACCGAGGCAGACAAAGCAAAAGTTAAATTGTCTGTTACGGCTACTAAGGGTAATACaaaaaaaTCGCAACTACTAGAAGAAAAGAATATTAAAAACGAGCTATTGGATACTTTCTTGGAAGAAGATCAGACGTCAATCCCAATTCCACTAGAGGAAAATGTTAAATTGGAGCAAAAGCATGAACAAGAAGATAAAGATTATCTTAAGAACAATCTCGTTTGCAATGACGACTATGAGAATTTTGTGAATGACGTCGACTCTGAGGACTCTTCCCAATCGACGAGTGATACGGACGATGACACAGATGCCAGTTGGCCGGAGGAGAAACCTAATGACAAATATGCCATAATCTATCGAAAAATAGCTGTAAAACCTAAAAAATATCGTAAACATCCTAAACCGTTAGTGCCTCCAAAGCGTATGACCCGCGAAGAGATCGAAGCCCGTAATGCTCAACAAGCTGAGTACGATACCGTTATTGCTAAATTTTACGATAACATGCGATGTCCGAAATGTCAACTTCTCGTACGTTGTTTTGGCGATATGCGAGCTCATTTTCGCATCTCGCATAACGATGATCATGGCTTCGTGGAATGTTGTGGTAGAAGATTTATTACCCGTAAAACACTTGCAGAACATGTGTATGTGCATTGGAATCCCGATCATTTCAAATGTAGCAGCTGCAATAAAACGTGCCTAGACTCGAAGCAATTGGAAACACATGAGAACACACATCTACCCAATCCGCGTCCATCCAAATATAAGAAAACATTTCAATGCGACAAGTGCCCGAAAACCTTCTCTTCAAAAGCATCATTCGAACACCATTCCTTCGCAAAGCATGTACCGAAAGAGGAATTCAAATTCGAATGCCCGGAATGCAAGAAAAAATTACCGACCGATCGTAAATTGAAGGAACATTTGAAATACTCACATGATCCACAAAGTTCAGTTATATGTGATAAATGTGGCAAAACACTAAAGAGTGGATACAGTCTTAAAAAGCATAATGAAATAGAACATTCGGACAAACCGAAGCCACCACCCGAGCCCCAACAATGCGAAATATGTGGCACTTGGCTGCGCCATTTGTCCGGACTTAAGCAGCATATGAAGAGTTTACATGAAGATACTAACATTGAACACCGCTGTCATATATGCAATAAAACCTCTTCCACAGCCAGAGCTCTTCGAAGACATATCTATCATAATCACGAATGTGCCAGAAAATTCAAATGTACCCTTTGTGAGAAGGCATTTAAAAGGGCTCAAGATTTAAGAGAACATACATCGGTGCATACGGGTGAAGTATTATATACCTGTCCTAATTGTCCGATGACATTCTTCTCGAACGCGAACATGTATAAACATCGTCAGCGTTTACATCGTGCCGAATGGGAGGCTGATCGTAAGAAGCCAATTCCTCCTAATATTATGGGTCAAGCTAAGCAAGGCAGCAAATTAGTAAAACTAAAACGATCAACAGTCAACAACATCGCCGTTATAACACAATTTCCTAATACTGATATATTACAATTTAAGCCTCCTTCTGAAAGTGATGAAAATGCATTAACAAATACATTACCGACGGATCGTAAATTGCAGCAACATTTAAAAAATGATCATGATCCACAAAAACTATTTATATGTGATAAGTGCGGTAAAATTTTTAAAAATAGTTACAATTTAAGAAAACATAATGACATGGAGCATACCGAAAGGAAATTTACGCCGGAACCGCAACAATGCAAGCTTTGTGGTACATGGTATCGTCATTTGGCTGGTTTGAAAACGCACATGAAAAACATCCATGAGAATACAAGCAATGAACATCGTTGTAATATATGCAGTAAAGTATCAACTACTGAGAGAGCTCTAAAGCGTCATATATACTTGAATCATAAGTGTATCCGCAAATTCAAATGTAGCATGTGTTCGAAAGCTTTTAAGCGTGGCCAAGATTTAAGGGAACACATTTCAGTACATACGGGTGAGGCGTTGTACACTTGCCCCAATTGTCCAATGACTTTTGCGTCCAGTGCCAATATGTATAAACATCGGCAACGTTTGCACAAAACTGAATATGAAGCAGATCGTCAACAAGCCATTCCTCCGAATATCATAAAACAAGCAAAGACTGGTACAAGCAAAGTTCGTTCTTTTGGTGTATCTAATGCTTTTGCAAATCCGCAGATAGTAATAAATTAG
- Protein Sequence
- MFCILCLEKANSSIPGEKFIDIFSEEGLRLNISSIIDKHFWLKPKRNCASIQQVCRNCWNVIRDFHALYVRVVEAHHQLESKTVIVDDLLPHELKLKSERISCTDETIKLANNLAENIFDTEVKVEVNDLDLLPQIEIIEEIPNLSERSLRASRRNRQQMHDILSDKETCNKRIKRELSIELNIEPSHDIFADTDLPATESAKTDNDSVINNSLNVIVDDNVQNTNVMVKKRGRPRKTEADKAKVKLSVTATKGNTKKSQLLEEKNIKNELLDTFLEEDQTSIPIPLEENVKLEQKHEQEDKDYLKNNLVCNDDYENFVNDVDSEDSSQSTSDTDDDTDASWPEEKPNDKYAIIYRKIAVKPKKYRKHPKPLVPPKRMTREEIEARNAQQAEYDTVIAKFYDNMRCPKCQLLVRCFGDMRAHFRISHNDDHGFVECCGRRFITRKTLAEHVYVHWNPDHFKCSSCNKTCLDSKQLETHENTHLPNPRPSKYKKTFQCDKCPKTFSSKASFEHHSFAKHVPKEEFKFECPECKKKLPTDRKLKEHLKYSHDPQSSVICDKCGKTLKSGYSLKKHNEIEHSDKPKPPPEPQQCEICGTWLRHLSGLKQHMKSLHEDTNIEHRCHICNKTSSTARALRRHIYHNHECARKFKCTLCEKAFKRAQDLREHTSVHTGEVLYTCPNCPMTFFSNANMYKHRQRLHRAEWEADRKKPIPPNIMGQAKQGSKLVKLKRSTVNNIAVITQFPNTDILQFKPPSESDENALTNTLPTDRKLQQHLKNDHDPQKLFICDKCGKIFKNSYNLRKHNDMEHTERKFTPEPQQCKLCGTWYRHLAGLKTHMKNIHENTSNEHRCNICSKVSTTERALKRHIYLNHKCIRKFKCSMCSKAFKRGQDLREHISVHTGEALYTCPNCPMTFASSANMYKHRQRLHKTEYEADRQQAIPPNIIKQAKTGTSKVRSFGVSNAFANPQIVIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -