Gfus000465.1
Basic Information
- Insect
- Glossina fuscipes
- Gene Symbol
- su(Hw)
- Assembly
- None
- Location
- Scaffold297:67656-72713[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00057 0.046 14.3 1.8 1 20 166 185 166 187 0.94 2 12 5.3e-06 0.00042 20.7 0.4 3 23 238 259 236 259 0.93 3 12 1.1 90 4.0 0.2 1 23 265 287 265 287 0.90 4 12 3.1e-06 0.00025 21.5 3.4 1 21 294 314 294 315 0.95 5 12 1.1e-06 9.2e-05 22.8 0.8 2 23 327 348 326 348 0.97 6 12 2.9e-05 0.0023 18.4 3.0 1 23 359 381 359 381 0.98 7 12 5.3e-05 0.0043 17.6 0.8 1 23 387 409 387 409 0.97 8 12 1.1e-05 0.00092 19.7 1.0 1 23 415 437 415 437 0.99 9 12 3e-06 0.00024 21.5 0.4 1 23 443 465 443 465 0.98 10 12 1e-05 0.00083 19.8 2.3 1 23 469 491 469 491 0.97 11 12 0.0002 0.016 15.8 3.1 1 23 505 529 505 529 0.92 12 12 0.24 19 6.1 0.3 3 23 544 565 542 565 0.93
Sequence Information
- Coding Sequence
- ATGAATTTGCCTAAAAGTTTGCTTTGTGTTACAGAAATCTTATCCCTTAAATTCAATTCGCATTTCCCGATGAGTATTAAAGAAGAGAAGAAAGCTTCGCCTTCTTCCAATATGGCAGTAGGTGTTAAAATTCTCAATGATAAGAAGAAGAAAGTACCGTCACTTCAGTTGCCCTTTATGACATCCGTTCCGTCAGTACCGTTATCGCCGCCTAAGCAGATCACTTTGTCAATTGCGAAGCCGAAGAAACCTGTGAGCAAGGAAAAGAAAATGGATCATTATTTAATGCAAACGATAAAAGGTGaaaaaaaTGCCGAAGGTGTTGAAGGTCCGGAAACTATCGATTTTATTTTAACTGATAACAATGAAGATGACGACGGCAGCGGAGGGATTACTAAACCAAGTGGTGAGATTACTGAAGAATTACGCTTAACTGATGAGGAAGAACACGATGGAGTGCAAGGAGGAAATGAAAAAACTGAAGAAATTGTGGAACATGTGTGTGGCAAATGTTTCAAGACATTCAGACGTTTAAGGGGTTTAAAAAAGCATTTGGATTATTGTCGCTTTGATAGCGGTTATCATTTGCGCAAAGCCGAAATGCTTAAGAATCTGGAGAAAATAGAAAAAGATGCCGTTATTATGGAGAATAAAGACGTTTGCTTTTGCTGCGGCGAAAGCTATGATACTTATCATTTGGGTCATATAAACTGTCCAGACTGCCCCAAATCCTTTAAAACGCAAATGAGCTACGAACGCCACATCTTCATTACTCATTCCGAATTGAATGATCACCCCTGTTCGATTTGCAACGCGAAATTGCGCAGTGGGAACTTGTTGATATTGCATGAGGAACAGCATAAAAATCGTGGCAAACCGTATGCTTGTAAAATTTGTGGTAAAGATTTTACACGTTCCTATCATTTGCATCGTCACCAGAAGTATTCATCTTGCTCGGCTAATGAGAATGACTCGATGAAGTGTAAAGTGTGCGATAAAGCCTTTTATCGTTTAGATAATTTACGAGCTCATCTCAAACAACATTTAGGTACGCATGTCACAAAAAAGCCCGAATACATGTGTCCCATTTGCAAGAATTGTTTCTATAGTTTATCTACACTAAACATTCATACTCGCACTCATACGGGAGAGCGTCCGTTCGATTGTGATTTGTGTGAGAAAAAGTTCCCATCTTTAGTGGCCCTTAAAAAGCATCGTCGTTATCATACCGGCGAAAAACCTTATACATGCTCTGTGTGCAAGCAATCGTTTGCCGTTAAGGAAGTGCTAAACCGTCATATGAAACGTCATACCGGTGAAAGGCCATATGTATGCAATGAATGTGGAAAAAGTTTCATACAAGGAGTGCAACTACGTAATCACAGTAAAACTCATTTACGTCCTTACGAATGCAACAAATGCCCCGAGAAGTTTAAAACCGAAAAACAATTACAACGTCATTTTAGGGATCATCAAGTTTTAAGTAAGCGCCGTGGGCGATCAAAATACCCTCATAGATGTGAGACTTGCAAAGTATCGTTTAAAACTGAAAGTGAATATACTCAGCATATGAAAAAAGGCTCGCACTTAACTCCTGCTCAGAAACGAAAAATTAAAAATCGTACGGATTGCGCGGTTTGTaaaaaaaaTTTTGACTCTGTACAGAGTTTACAATTTCATATACTCAAAGTGCATCAGGAAGATCCGGAAAATTTTGTTAATGAAGATCCTTTTCAACGGCCAACCGTTAGTAATGAATCAAAGCAATGGGAGAGAGAAAATGATGAAGTTCCGCCACCAGCACCGAAAATTATAAAAATCGAAAGTAATGATGATATACCACATACTGAGATTATTCGAATCGTGGATACTAGTATACCAAATCTTGTAAGCAGCAATCTTAAGACATTTAATGATAAACAACCCATAATAAAAGCGGATGAAGGAACAATTGCTTCGTCCGATAAAGTCCAAATTTTGCAAGAATTTGTAATTCATGACCAGCCAACCACATCGTCGGTTGTCTCCGCCAATACTGGACAAACCATTATACTATCGAACGAAGCATTTACGGTTATACCTTTGGAATCAGATGGTGGTATTATTGAGCCTATAACCACTCACACTTTGCCAAATAGTGTAATTGTACCGGCATCCATTAAAAAATCTCAGAAAAAATCGTTGGCAGAAAGTTTAGCTGCTGCCATTGCTGATAATGATGAATTAACAACGTTTGCTGAAGAGGATGAAGAGCTAAGCGAAGATGACTATAAACTCAAAGATAATGTTTATAAACTACTCGATATGTTAGTGGATAATGTTACATTGAAAAAATTCGGTTGGCCTGAAACTACAGAGGAGAAAGTCCTATGCAAGGTCATTGAAAATTGTGGTCACGATTTATCAAAAGATCCTTACAATTATCAGGAGTGGGATTACGGTACCCGGATGCGCGAATATGTCAAGTTATTGTTTACCGTGGTTATACATAACGACTCAATCAAACAACTTTTAAATAACTATCCCATTGATGAGGTAATTGAATACGTTTTAGGCAacgatgacgatgacgaggacgacgacgatgatgatgatgagaacgatgataataccaatgaGAACAAAGAGGAGaaaaaaaCAGACAAATCTGCTAATAGTTCgaaacaaattaacaaaacggataataataaaaccgtaaaaagcgaaaaagaaaaattgaaaaactaa
- Protein Sequence
- MNLPKSLLCVTEILSLKFNSHFPMSIKEEKKASPSSNMAVGVKILNDKKKKVPSLQLPFMTSVPSVPLSPPKQITLSIAKPKKPVSKEKKMDHYLMQTIKGEKNAEGVEGPETIDFILTDNNEDDDGSGGITKPSGEITEELRLTDEEEHDGVQGGNEKTEEIVEHVCGKCFKTFRRLRGLKKHLDYCRFDSGYHLRKAEMLKNLEKIEKDAVIMENKDVCFCCGESYDTYHLGHINCPDCPKSFKTQMSYERHIFITHSELNDHPCSICNAKLRSGNLLILHEEQHKNRGKPYACKICGKDFTRSYHLHRHQKYSSCSANENDSMKCKVCDKAFYRLDNLRAHLKQHLGTHVTKKPEYMCPICKNCFYSLSTLNIHTRTHTGERPFDCDLCEKKFPSLVALKKHRRYHTGEKPYTCSVCKQSFAVKEVLNRHMKRHTGERPYVCNECGKSFIQGVQLRNHSKTHLRPYECNKCPEKFKTEKQLQRHFRDHQVLSKRRGRSKYPHRCETCKVSFKTESEYTQHMKKGSHLTPAQKRKIKNRTDCAVCKKNFDSVQSLQFHILKVHQEDPENFVNEDPFQRPTVSNESKQWERENDEVPPPAPKIIKIESNDDIPHTEIIRIVDTSIPNLVSSNLKTFNDKQPIIKADEGTIASSDKVQILQEFVIHDQPTTSSVVSANTGQTIILSNEAFTVIPLESDGGIIEPITTHTLPNSVIVPASIKKSQKKSLAESLAAAIADNDELTTFAEEDEELSEDDYKLKDNVYKLLDMLVDNVTLKKFGWPETTEEKVLCKVIENCGHDLSKDPYNYQEWDYGTRMREYVKLLFTVVIHNDSIKQLLNNYPIDEVIEYVLGNDDDDEDDDDDDDENDDNTNENKEEKKTDKSANSSKQINKTDNNKTVKSEKEKLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00746884;
- 90% Identity
- iTF_00746884;
- 80% Identity
- -