Gfus003179.1
Basic Information
- Insect
- Glossina fuscipes
- Gene Symbol
- -
- Assembly
- None
- Location
- Scaffold255:166689-177411[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0072 0.58 10.9 0.3 2 23 201 223 200 223 0.95 2 23 0.004 0.32 11.7 0.8 2 23 233 255 232 255 0.92 3 23 0.00042 0.034 14.7 2.2 2 23 283 305 282 305 0.96 4 23 2.8e-05 0.0022 18.5 1.3 3 23 316 336 314 336 0.96 5 23 5.9 4.7e+02 1.7 1.7 2 23 359 381 358 381 0.94 6 23 0.00012 0.0095 16.5 1.4 2 23 391 412 390 412 0.96 7 23 8.6e-05 0.0069 16.9 2.1 1 23 421 443 421 443 0.96 8 23 0.0005 0.04 14.5 2.9 2 21 453 472 452 475 0.94 9 23 1.2e-05 0.00099 19.6 1.4 2 23 495 516 494 516 0.97 10 23 9.6e-05 0.0077 16.8 0.9 1 23 522 544 522 544 0.96 11 23 7.4e-05 0.006 17.1 1.4 1 23 549 571 549 571 0.97 12 23 1.2e-05 0.00098 19.6 1.7 2 23 578 599 577 599 0.97 13 23 0.086 6.9 7.5 3.7 1 23 605 628 605 628 0.94 14 23 0.028 2.2 9.0 0.1 2 23 885 907 884 907 0.95 15 23 0.0018 0.15 12.7 1.8 2 23 967 989 966 989 0.96 16 23 0.032 2.6 8.8 0.1 3 23 1000 1020 998 1020 0.96 17 23 0.00043 0.035 14.7 1.2 1 23 1029 1051 1029 1051 0.95 18 23 5.8e-05 0.0047 17.4 1.3 2 21 1061 1080 1060 1083 0.93 19 23 4.9e-06 0.00039 20.8 1.8 1 23 1102 1124 1102 1124 0.98 20 23 0.00015 0.012 16.2 1.5 1 23 1130 1152 1130 1152 0.96 21 23 0.00018 0.015 15.9 0.8 1 23 1157 1179 1157 1179 0.97 22 23 2.9e-05 0.0023 18.4 4.3 1 23 1185 1207 1185 1207 0.98 23 23 0.00011 0.0088 16.6 3.3 1 23 1213 1236 1213 1236 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAATGGCAATTGTGGTGTCGCTTATGTGCTGACCGAAATTCGGACTGTTACACTAATGCTTTCCATGACGAAGCTCTGAAGGCTGTCAATCCAAATATGACTTTAGTCGAAGTCATTGAAAAATGTTTTTCAGTGAAAATAACTCCAGAAGATGATTTCCCGAAGGTGCTATGTTCCCAATGTCTACGTTTAATTAAAGACATTGTTGACTTCAGTGAACGTGTTATCAAAGCGCAGGAAATATACAATGAGTTAATATATAACACAAAGCAAAATAGTCAAATGAATATTGACATGAATGTTGATACACTTGTGACTAAAAAATCTGGTTTAACAACTGGCAAGCAAAGTCCTACATACAGCAGCATAATAAGTAAGGTATCTTCTGTAAATATTAAAAATGAACCAGAAGAAGAAGAGGAGCAAAGTATTGAAAAGATTGCAGAACTTGAAGCAGATGAACACGTTTATGAACCCAATCCGGACCAAAAAGATGGGTCATGCTGTGATTCGGATCCATTTAGTAGCATAGAAGATAATGGTAATCAAAAGGACGGAGAGAACAGATCGAATATTGATGTCATATTAAATATAGAATGCAATGAATGTGCTAAAGAATTCGAGTCTTTCGATTCTTATCGTGAACATCTGAAATTAATGCATGGAAAAGGAAAGTCGAGAGATAAATGGCAATGCCCCAAATGTGACAAAACTATAACTACAACAtttttttttAAACGTCATCTTATAGATATTCACTTCGGTCAGAAATCCCAAAAAATAAGACAAGAAATGTCACGCGAATTGCTAGATAAAGGACGGGATATTAATTTAGAAATCTCCTGCAGTGATTGTGGGCAGCAATTCGAAACATTCCATTCTTACAGAAGGCATTTGAAATCTGTGCACAGCAAAGGTAAAGCGCGCGAAAAATGGGATTGCCCGAAGTGTAATAAAACCGTGACGACAAGTTTTAATTTTAGAAGACATCTTCTGAGTCACGTAGGCCAAAAATCTGATTCTAAGCATAGAGAAAAAATCCAATTACCAGACATTAAAGTAGACATCAGCTGCAGAGAATGTGCGGGTCAATTCAACTCATTCCAATGCTATCGTCAACATTTACGGTTGGCGCATGACAAGGGGAGGGCCCGCGAAAATTGGTGTTGTCCGCTTTGCGACATTACAGTGTCAACTAGCTATAGCTTTAGACGCCACCTGATGACCCACATACCGGACAAAGAAAGAAGAACTCATCCATGCTCATTATGCAGTAAGAGTTTTGTTACGTATTCAGAGTTGCGCATTCATCTCTTCAGACATAAACCGCTGGAAGAACGGAATGTGATACCATGTCCACATTGCGCCAAACGCTTTTCCACCAATAAGTTGCTACAAACACATATTAAATGCATGCACCTTAACGAGAGACAAAAACGTGTAACGACCAAAAAATATCAAGATGAAAAGCACGTCGTTTGCGAGGAATGCGGCATGTGCTTGCGCAATAAAACCAATTTAAAAATTCATATGCAAAGACATAGTGATAATGCACCGTTCGAATGTGAAATATGCAAGAAGCGTTTTAAAAATCCTAGACGGTTGAAGATACATAGTGAAATTCATGATTCACATAAACACGTTTGCACTATTTGTGGCCAGCAATTAAATACTCGTAACACTTTGAAACGACATATGTTAGTGCATAATGGaaaaaaaCAACAAAAATGTGATTATTGTGGGCAAGGTTTTAATCATTCTACAAACTTGAAAATACACTTGCTTTCTCATACCGGTCTTAAACCATACGCCTGCAATTTTTGTGATCGAACCTTCACAAATGGAGCCAATTGCCGTCTGCACAAAAAGAAAATGCATCCCGAAGAATTGGCTGCTTTAGAAGCTGCTGGTGGAAGCAAACATATTGTTCAAAAAATACCTACTTTGGAAACCTTAAAGGCTCTTACCAAGGCAGCTAGTAATTTGAAGCCGGTGGCAAAACCAAGGGAaataataaaaaaaCCTCTATGTAATGGCAAAATGAGTGAATGGCAATTGTGGTGTCGCTTATGTGCTGACCGGAATTCGGAATGTTACACTAGTGCTTTCCATTGCGAAGCTCTGAAGGCTGCCAATCCAAATATGATTTTAGTCCAATTCATTGAAAAATGTTTTTCGGTGAAAATAACTCCGGAAGATGATTTGCCCAAAGTAGTATGTTCCGAATGTCTACGCCTCATTAATAGCATTATCCACTTTAGTGAACGTGTTATTAAAGTACAGGAAATGTTCAATCATTTAATATATGACGCTGAACAGAGTCAACTTAATATTGATGTAAATGATGCCAAATTTGAGCCTGAAAAGTCTACTATAACGGCTGGCGAGCAAAGCCCAACATATAGTAGAATGTCTGAAGCATCTATACATATTAAAGATGAGCCCGAAGGAGAAGAGGACAAAAACATTGACGAGATTAGAGGGCTAGTGAGAGAAGAACATGTTTATGAACCCAATGCGGACCCAAAAGATAGCTCGTGCTGTGGTTCGGATCTGTTTAGTAGCATGGAAGAGAAAAAATTTAATCACCTTCGTAACCAAAGGGAAGACAAAAACATAGTAATACAAGATGTTATAGCCAGTATAGAATGCAACGAATGTGCTAAAGAATTTGAGTCTTTTGATTCATATGACGAACATCTGAGGTTAATACATAGTAAAAGAAATTCGAAAGGTAAATGGCAATGTTACAAATGTGAAAAAATTGAAACGGAGATATCATTTTTTAAAACTCGTCTTACAGATCTGCGTTTCGACGAGAAATCGCAGAAAATAAAAAATAGAAGATCACGTGGGTTGCAAGCTAAAGCAGGAGACATTAGCTTAAATATGTCGTGCAATGATTGTGGACAGCAGTTCGAAACATTTCATGCGTATAAAGAGCATTTGAAATCCATGCACGGCAAAGGTAAAGCTCGTGAAAAATGGGATTGCCCCCTGTGCGACGTCATTGTGCAAAACACTTACAGCTTTAGACGCCATCTCATGAGCCATATATCAGATAAAGAACAAAGAACCCATTCGTGTTCATTGTGCGATAAGAGTTTCGAAACATATTCCGGAATGCGTATTCATCTATCCGCTCATGAACCGCCGGGAGAACGAAATTTGATACCATGCCCACATTGTGACAAATACTTTTCATCAAATGAGTTGCTGCAAGCGCATATCCAGTGCATGCACGTTAACTGGAGACGAAAACGAGTAACGACAAAAAAGTTTCAAGACGAAAAGCATTTTGTCTGTGAAGAATGCGGCTTGTGCTTGCGCAATAAAACCAATTTAAAAATTCATATGCAAAGACATAGTGATAATGCACCGTTCGAATGTGAAATATGCAAGAAGCGTTTTAAGAATTCTAGGAGGTTGAAGATACATAGTGAAATTCATGATTCACAAAAACACGTTTGCAACGTTTGTGGTCAAGAATTAAATACCCGCAACACATTGAAACAACATATGCTAGTACATACTGGTAACAAACAACACAAATGTGATTATTGTGGTCAAGGTTTCCATAGTTCATCAACCTTGAAAAGACACTTAATATCCCACACCGGTCTTAAACCATACGCCTGCAATTTTTGTGATCGAACTTTCACAAATCGGACCAATTTTCGTGTACACAAAGAGAAAAAGCATCCTGGGGAATTGGCTGCTTTAGAAGCTGCTGGTGTGGGCAAACATATTGCCCAAAAATTACCAACCTTGGAAACCTTAAAGGCTCTTACCAAGGCAGCTAGTAATTTAAAGCCGGTCGCAAAGCCAAGAGACTGA
- Protein Sequence
- MSEWQLWCRLCADRNSDCYTNAFHDEALKAVNPNMTLVEVIEKCFSVKITPEDDFPKVLCSQCLRLIKDIVDFSERVIKAQEIYNELIYNTKQNSQMNIDMNVDTLVTKKSGLTTGKQSPTYSSIISKVSSVNIKNEPEEEEEQSIEKIAELEADEHVYEPNPDQKDGSCCDSDPFSSIEDNGNQKDGENRSNIDVILNIECNECAKEFESFDSYREHLKLMHGKGKSRDKWQCPKCDKTITTTFFFKRHLIDIHFGQKSQKIRQEMSRELLDKGRDINLEISCSDCGQQFETFHSYRRHLKSVHSKGKAREKWDCPKCNKTVTTSFNFRRHLLSHVGQKSDSKHREKIQLPDIKVDISCRECAGQFNSFQCYRQHLRLAHDKGRARENWCCPLCDITVSTSYSFRRHLMTHIPDKERRTHPCSLCSKSFVTYSELRIHLFRHKPLEERNVIPCPHCAKRFSTNKLLQTHIKCMHLNERQKRVTTKKYQDEKHVVCEECGMCLRNKTNLKIHMQRHSDNAPFECEICKKRFKNPRRLKIHSEIHDSHKHVCTICGQQLNTRNTLKRHMLVHNGKKQQKCDYCGQGFNHSTNLKIHLLSHTGLKPYACNFCDRTFTNGANCRLHKKKMHPEELAALEAAGGSKHIVQKIPTLETLKALTKAASNLKPVAKPREIIKKPLCNGKMSEWQLWCRLCADRNSECYTSAFHCEALKAANPNMILVQFIEKCFSVKITPEDDLPKVVCSECLRLINSIIHFSERVIKVQEMFNHLIYDAEQSQLNIDVNDAKFEPEKSTITAGEQSPTYSRMSEASIHIKDEPEGEEDKNIDEIRGLVREEHVYEPNADPKDSSCCGSDLFSSMEEKKFNHLRNQREDKNIVIQDVIASIECNECAKEFESFDSYDEHLRLIHSKRNSKGKWQCYKCEKIETEISFFKTRLTDLRFDEKSQKIKNRRSRGLQAKAGDISLNMSCNDCGQQFETFHAYKEHLKSMHGKGKAREKWDCPLCDVIVQNTYSFRRHLMSHISDKEQRTHSCSLCDKSFETYSGMRIHLSAHEPPGERNLIPCPHCDKYFSSNELLQAHIQCMHVNWRRKRVTTKKFQDEKHFVCEECGLCLRNKTNLKIHMQRHSDNAPFECEICKKRFKNSRRLKIHSEIHDSQKHVCNVCGQELNTRNTLKQHMLVHTGNKQHKCDYCGQGFHSSSTLKRHLISHTGLKPYACNFCDRTFTNRTNFRVHKEKKHPGELAALEAAGVGKHIAQKLPTLETLKALTKAASNLKPVAKPRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -