Gfus015418.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossina fuscipes
Gene Symbol
-
Assembly
None
Location
Scaffold121:117721-125243[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 6.5e-07 5.2e-05 23.6 1.0 2 23 211 232 210 232 0.96
2 24 2e-06 0.00016 22.1 0.8 1 23 334 356 334 356 0.97
3 24 0.0014 0.11 13.1 1.2 1 23 362 384 362 384 0.98
4 24 8.6e-06 0.0007 20.1 0.3 1 23 402 424 402 424 0.99
5 24 0.0093 0.75 10.5 0.2 1 23 433 456 433 456 0.96
6 24 0.0013 0.1 13.2 4.8 1 23 462 484 462 484 0.98
7 24 0.00013 0.011 16.3 0.3 2 23 491 512 490 512 0.97
8 24 1.9e-08 1.6e-06 28.4 0.7 1 23 518 540 518 540 0.96
9 24 0.0072 0.58 10.9 0.9 1 23 546 568 546 568 0.98
10 24 0.00033 0.027 15.1 3.0 1 23 574 596 574 596 0.96
11 24 5.8e-05 0.0047 17.4 3.7 1 23 602 624 602 624 0.98
12 24 1.9e-06 0.00015 22.1 0.7 1 23 630 652 630 652 0.99
13 24 0.04 3.2 8.5 0.8 1 14 658 671 658 672 0.92
14 24 3 2.4e+02 2.6 5.2 2 23 699 720 698 720 0.95
15 24 0.0003 0.024 15.2 5.5 1 23 726 749 726 749 0.96
16 24 0.02 1.6 9.5 4.5 1 23 773 796 773 796 0.96
17 24 0.00017 0.014 16.0 0.5 1 21 802 822 802 822 0.96
18 24 0.98 79 4.2 0.5 10 23 824 837 823 837 0.93
19 24 4.9e-08 3.9e-06 27.1 1.5 1 23 843 865 843 865 0.96
20 24 0.025 2 9.2 2.9 1 23 871 893 871 893 0.96
21 24 2.7e-05 0.0022 18.5 1.3 1 23 899 921 899 921 0.97
22 24 1.4e-06 0.00011 22.5 0.6 1 23 927 949 927 949 0.99
23 24 2.9e-07 2.3e-05 24.7 1.3 1 23 955 977 955 977 0.99
24 24 3.2e-05 0.0026 18.3 1.6 1 23 983 1005 983 1005 0.97

Sequence Information

Coding Sequence
ATGGCTTTGGATTTTACATTAATGTGTCGCACTTGCTTGAGTGAAAATAATGTGTATCATAAATTACAAGATGCCCCCTTGGAAAACTATAAAATTTTGGAAATGTTAACAGCATTGGTGCCGCAGTTAAATATTGACAAAGAAGATCTTACTTTCCCGGTTTTAGTGTGTGACTCTTGTGTGGATCAACTGCTAAAAGCATTTAAATTTCAGCAACAATGCTTGCAAAGTAATAAAATTTTTATGACCCTGGTGGCAAATAATCCCAGCACTACCAACAACGCTGCTACTGGAGTAGTGGTTTTAAATTGTAACAAAATGAAAATGGAGGTGGAAGACGATATCCATTTGCCAGAGAACAATAATTTTAAAGTAGAAATGGATATTGGGGAAGAGGCGAAACAAGAAAATTTCCCAACTGAGATAAATCCTCAAGAAATAGAGATGGTCCTAAATGCTAACAGTGTTGATTGGTTTCATAATAATGATAGTGTTGAAGACGATGCTTTTAGTGCTAAAGATATTTTAGACATTTCATCTAAAGATAAGGATACAAGTATCGAAACTATCGCTAGTAAACTTAGAGCCCTAGAACGAGCTAATCATAAGGATGCACAAACTGCGAAGCTAGTATGTCCCCAGTGTCCGAAAACGTTTAAGACTCAAAAGCTTCTAAATAAACATATTACTCGACATGCTAACAAACACCCCAAGCTGAAAACAACCACAAGAAAAAAGAAGAATAGCTTGGATAAGAACTTAAAAACTGACACAATTGGAGACGTTGAAAAAGTTGGAATAAAAACAGATGCTGACGATGCTGCGGTGAATACACTGGAAAAAGGTCAAGATGAGAAAGATGCAAGGAATCAAGAAAACGAAAATCCCACTAATGAAGTAAAATCAGAAATTTTACATGATGATGATAACAAGGATTTTATAGATACTGGCATTGGCGAGATAGAGAAACCAAACAGTAATAATCGTCGTAATGGTTGTTATCAATGTCAAGAATGTGGTAAAGTATTCGATCGCCCGTATCGTTTAAAACGCCATAGTTCGGTTCACTCTTTAGAGCGTCCTTACCAATGCGAACAATGCAAATATCGCTTTTTAACCCAGGCTTTGCTGAAAGCCCATAAACTCATGCATGACAATGAAAAGAAAGGTATTCAAAGTACCCACCCCACCCCTATTAATGGCTTCAAATGCCCCGATTGCCCTAGACGTTTTGAAAAGCAAGCCTCTATGGCAGCTCATCGCCAAACACATACGCGTAATGCTGGTTTGGCCAATTATCCATGTCCGGCTTGTGAACGCAAGTTCATGAATATTCGCTCTTTGGCAGAACACATGTCAAATAAACATCCGGAAATAGAAAAACACCAGTGTAATCAATGTGAGAAATCATTTGTTCTACATGCTCATCTAGTTGAGCATTTAAATCGACATATGGGTAACAAAAATCTTGTTTGCCTGGTATGTGAGAAAGAGTTTAGTTATGGCAATACCCTAAAGGAGCATATGCGTACGCACAGCGGTGAAAGCCCTTACTTATGTCCCCAGTGCGGTAAAACTTTTCGCAGTGCTAGTAATCTACGTCAACATATGGAACGTCATGGTAATGAGAAACGTTATCAGTGCCCAGAATGCCCAAGTCGTTTTGCCTGCCAATCGGATCGCATTAAACACATGTCGATACACACTAATCACAAACCACACGTCTGTGATTTATGTGGTTCAAGATTTACACGCTCCTACTCTTTGTCCAAACACAAACAATTACATACCGGCGAAAGGCCCCACAAATGTGATCAATGTAATATGGCATTTGCTATAGTTTATCACCTTCGCCGACATATGCGTACACATACCGGTGAAAAACCATACAAATGTAAATACTGTGAGCGCGCCTATGCCGAAAGTGGTGATTTAACTAAACATTTGCGCACTCACGTCGGAGAAAACACTTACATGTGTACCCAATGTCCTAAGGCTTTTAAATATCAAAGCTCGGAAAAGTCATGGTCAGGATGTAATGATTCAGACAATAACGATACGAACGATTATTTGATATCATATAAATCACTACTTTCATGTACCGAATGCAGAGCTACGTTTAAAACTGTCAAACGCTTAAAGTGCCATaaaaaaaCTCACGTGAAATGCTATCGTTTCGTTTGTCATATATGTGATCATCGATTTAAATTTCCACATCTTTTAAAACAACATCTGATCAAAGTTCATGCTCAATTCCCTAACAGTAAAAATAGTAACGAATCAGTTGATAAATTAACAGTAGAGAAACAAGTGCAATTCCATTGCAATTATTGCAAATGTGCATATAATTCGGTAGGCAGTTTGGCGCAGCACATGAGTAAGAAACATCCGACCATAAAACCATTCaaatgcgataaatgcgataaaGCGTTTGTAGTGGAAGAACACTTTAAAATTCATATAAATCCATTTTCTTTTAAATTTGCGATGAAACAGCATATGCGTATGCATACAGAACCAGCGCCTTATTTATGCACACTGTGCGGTAAAACATTCTATCGTCCCAGTAATTTACGTCAACATATGCAACGACACGGCGAAGATAAACCTTACGCCTGCCCCCATTGTCCTAGACGTTTCAAATGCCCTTCAGATCGTTACATACACTTAATGTCGCATAATGCGGGTAAAGTGCATGTTTGCTCAATATGCGGTAGTCGTTTTTCACGTCTCGATACCCTAAACAATCATCAGATGTTACATTCCGGCAAGAAGCCCTACAAATGCGATCAATGTTCTATGGCCTTTGCTTCTCCAGTTAATCTAAATCGTCACAAACGCACTCATACTGGGGAAAAGCCATATAAGTGTCAATATTGCGATCGTGCATATGCTCAAAGCAATGATTTAACCAAACATTTACGAACGCATTTAGGCGAAAACGTGTATATTTGTAATAAATGCCCGGAAGCCTTTAAATATCATGCGGAATTGAAAAAACATCAATTGCAACATTATCATGAAGAACAAGAATTACAAATATCAGCAAATTCCACCGATGTAAAATGTGATGTTGAAAAATGTTGA
Protein Sequence
MALDFTLMCRTCLSENNVYHKLQDAPLENYKILEMLTALVPQLNIDKEDLTFPVLVCDSCVDQLLKAFKFQQQCLQSNKIFMTLVANNPSTTNNAATGVVVLNCNKMKMEVEDDIHLPENNNFKVEMDIGEEAKQENFPTEINPQEIEMVLNANSVDWFHNNDSVEDDAFSAKDILDISSKDKDTSIETIASKLRALERANHKDAQTAKLVCPQCPKTFKTQKLLNKHITRHANKHPKLKTTTRKKKNSLDKNLKTDTIGDVEKVGIKTDADDAAVNTLEKGQDEKDARNQENENPTNEVKSEILHDDDNKDFIDTGIGEIEKPNSNNRRNGCYQCQECGKVFDRPYRLKRHSSVHSLERPYQCEQCKYRFLTQALLKAHKLMHDNEKKGIQSTHPTPINGFKCPDCPRRFEKQASMAAHRQTHTRNAGLANYPCPACERKFMNIRSLAEHMSNKHPEIEKHQCNQCEKSFVLHAHLVEHLNRHMGNKNLVCLVCEKEFSYGNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHGNEKRYQCPECPSRFACQSDRIKHMSIHTNHKPHVCDLCGSRFTRSYSLSKHKQLHTGERPHKCDQCNMAFAIVYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCTQCPKAFKYQSSEKSWSGCNDSDNNDTNDYLISYKSLLSCTECRATFKTVKRLKCHKKTHVKCYRFVCHICDHRFKFPHLLKQHLIKVHAQFPNSKNSNESVDKLTVEKQVQFHCNYCKCAYNSVGSLAQHMSKKHPTIKPFKCDKCDKAFVVEEHFKIHINPFSFKFAMKQHMRMHTEPAPYLCTLCGKTFYRPSNLRQHMQRHGEDKPYACPHCPRRFKCPSDRYIHLMSHNAGKVHVCSICGSRFSRLDTLNNHQMLHSGKKPYKCDQCSMAFASPVNLNRHKRTHTGEKPYKCQYCDRAYAQSNDLTKHLRTHLGENVYICNKCPEAFKYHAELKKHQLQHYHEEQELQISANSTDVKCDVEKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-