Gbre004465.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- -
- Assembly
- GCA_000671755.1
- Location
- Scaffold3:1289216-1297918[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1 63 4.0 0.7 2 20 269 287 268 289 0.92 2 18 0.042 2.5 8.4 0.3 1 23 298 323 298 323 0.90 3 18 0.75 46 4.5 5.3 2 19 335 352 335 354 0.94 4 18 4.2 2.5e+02 2.1 1.8 2 23 367 388 367 388 0.84 5 18 0.088 5.4 7.4 0.2 3 23 397 418 396 418 0.94 6 18 0.0003 0.018 15.2 1.9 3 23 426 446 425 446 0.97 7 18 0.00088 0.054 13.7 4.6 1 23 452 475 452 475 0.96 8 18 0.0015 0.091 13.0 2.3 2 23 483 504 482 504 0.96 9 18 0.013 0.8 10.0 0.9 1 22 556 577 556 580 0.90 10 18 0.00045 0.028 14.6 1.8 1 23 585 607 585 607 0.99 11 18 0.0095 0.58 10.4 0.4 1 23 623 648 623 648 0.97 12 18 0.029 1.8 8.9 2.1 1 23 661 684 661 684 0.96 13 18 0.0028 0.17 12.1 7.7 2 23 690 712 689 712 0.93 14 18 0.015 0.89 9.9 2.5 2 23 716 738 715 738 0.94 15 18 0.0006 0.036 14.2 3.2 1 23 744 767 744 767 0.97 16 18 0.031 1.9 8.8 0.6 1 23 772 794 772 794 0.98 17 18 5.7e-05 0.0035 17.4 6.3 1 23 800 823 800 823 0.98 18 18 0.88 54 4.2 1.1 1 19 828 846 828 850 0.90
Sequence Information
- Coding Sequence
- ATGACCGTCGAATCACATATTGACGTTTGTTTGCACTGCAATTTCATCAAGAACGACTTAACAGATGAAAGCAAACAGTTTCAAGATTTGTTCGATGAATTGGGTAAAGAATTACAGTTAGTAAAATTGGTGGAGAAGTTTTTCCACATAAAAGTCTTGGAAACTAATAATCAAAAATTATGTGACGATTGTGTGAATCATTTAATTGAATTAGTGGATTTGGAAGAACATGGCAAGAGATCAAATGCGGGACAATTAACTTCAGAAAACAAGTTAGAATTCGAACACAGCGATGATGAGCACAGCAGTGTATTGTCTAACGAATTCTGCGAAGAGATACTTTCAGATAATAATGATGGAACCGAAAATCTCCAGGAATTTGAAAGTGTATTCCTGACTGAAGAAATCAATTTGGATATAACAAATAAATCTAACTCGTCTCAAGAAAACATAACCAACAAAAATCAAACCGATTACGGCGATGATTTACTTAAAAATAAATTATTTGAAGAGATGGCGGAGAATTCGGTTAGCAATAAAGCAAACACGGAAGCTGAGGCCGAGAAAGAGTTCAACGAAGAATACATAGTAGAAGAAGATACCCGTAGTTCTGACATTGATTTTGCAGACAGCGATTGCGAGGAAGCTGCAACTGAAGATGAAGTCTCCACAGATTACGTAGAAGCACAAGATCTCTTTGACGAAAATCCTTGTTCTTTGGTTGTTGATTACGTTGATTTTAACGGTTATTTAGATTCAGTTTTAACTACCGAATTTGAAAATTTAGAATTACGTTGGACAACTGAGTGCAAATTATGTTTGAGGAAATACGAGACATTGCAAGAACTCTTAACACATGCTTGCCTTACAAAACAAGCCACTGAGGAAAATTTTGTGTGCCTGTTCAAAGATTGCGATGAAGTTTTAACAAATATTAAGCACTTAGCTAGACATGTTGTTATAAGACACTATACTAGCTTAGAAAGCTTGAAAATCTATGGAAGCTGTCCTGAATGTCAATGCAATTTTTCCGATTTTACACAATATAACAAACATTCTTGCTGCCGTGATTTAAGACGCGTACCAGGAGTAGGCAATACATGCAAATATTGTAATGTAGGTTTTCCATCATTCAAAAGATTCCTATTTCACATGCAATTTCATTTGCAAAAATACCGGCCAAATATTTGCTTGATATGCTCGGCGAAATTTAACGATCCTAATTATTTCTTTGAACATGTTAATTATAGCCATGAAGCAGACGACGTCAAGGCCTGTGTAAAATGCGATCGtttttttAGGGATGAAAAATTGTACAAAAGCCATATGAAAAAGCATAATACAAAACATTGGTATGATTGTTCACAATGTCATAAAAAATATGAATATCGTCACAATTTACTAACGCATATGGCTATTTATCACAATTACAAAACCAAATATTTACAGTGTGAATACTGTTCGAAACAATTTGTCAATGGAAATAGTTACCGAAAACATCAAAAATTTCATTTGCCCGAAACAGAGGTCCATGCTTACGTTTGTGTGGAGTGTGGTCTAGTTGGCAATGAAAGTGAAAAGATAAAAGTACAAATACACACGGAAATTGACACAGCATCCCCATGCTTCAACGCCGATATTGTTGAGCAGATAGTCACTGTTGTCTATAATTGCGAAAATTGCAATTTAGATTTCGAAAGTATTCAGCAATTAAACAAACATCGTTCATCTTCCACCCACAGCGACGACTTATTTAAATGTTCAATCTGCGATAGAGCATACAACGACTACAGACGTATGCGTAATCATGTAAAAACGCATAAAGCTTATGAACATTGGCATGAAAATTTTCCAGTATGCCGTTTGTATGTATGCAATAAACAGGACTGTGAAGAATCTTATCCATTGTGGTCGTCCCTTTATTACCACAAAAAGCGCCCTCATCGAAAGCAAAATGCCGATAAAGTGTCTAAGCTTGACTTTAAATGTCAGTTTTGCAAAAAACTTTGCCCCACAAAAATGTCCTTGGCTGTACACGTAGCACGCAGTCACAATAACAAATTTCTCAAGTGCTCCCATTGTCATTATTCCTACAAAGATCAAAAATGCCTGCAGAAACATATTGATTACATGCACACGCCCGTAACGTGTAATCAATGCTCTAAAACCATTAAAAATCGCAAAAATTTTGAAATCCATAAACATGTCGTCCATCAGCATACGCAACGTTACTTCTGCAGCGTTTGCCAGAAAGGCTTCTATCATCGAAGCGAAATGGAAAATCATGAAAAGACAACGCATACACAAGTAACTTATAATTGCGAATTATGCGGCTTTAACACCAATTACCAAAAATCCATGGATATTCACATGGCTAAGCATAATAATCAAAAGGAATTTCAGTGCGAATTCTGTTCAAAGCAATTCACTCGCAAGCACGTTCTAAAGCAACATATGCGACGATATCACGAAAATACTGAATACTTCTGCTCTTATTGTGACGATTCTTTTCCTACTCTTCGATTATTAGGAATTCATTGCGCAGAACACCACAAAGAATTGGATGAGGAACCTCTAAAGAAGAAGTTCAAACAATCTGCAATTTATAAAATGCCTCTACAACAACAACGTCCATCAGAGACCGACTCAAGCGAAATTTTTGAAATTGAAGAACTAGTTGAAGAAATTGATATGGACGACGATGACGACCTCCAAGTCAATATGAATTTGATAATTTGA
- Protein Sequence
- MTVESHIDVCLHCNFIKNDLTDESKQFQDLFDELGKELQLVKLVEKFFHIKVLETNNQKLCDDCVNHLIELVDLEEHGKRSNAGQLTSENKLEFEHSDDEHSSVLSNEFCEEILSDNNDGTENLQEFESVFLTEEINLDITNKSNSSQENITNKNQTDYGDDLLKNKLFEEMAENSVSNKANTEAEAEKEFNEEYIVEEDTRSSDIDFADSDCEEAATEDEVSTDYVEAQDLFDENPCSLVVDYVDFNGYLDSVLTTEFENLELRWTTECKLCLRKYETLQELLTHACLTKQATEENFVCLFKDCDEVLTNIKHLARHVVIRHYTSLESLKIYGSCPECQCNFSDFTQYNKHSCCRDLRRVPGVGNTCKYCNVGFPSFKRFLFHMQFHLQKYRPNICLICSAKFNDPNYFFEHVNYSHEADDVKACVKCDRFFRDEKLYKSHMKKHNTKHWYDCSQCHKKYEYRHNLLTHMAIYHNYKTKYLQCEYCSKQFVNGNSYRKHQKFHLPETEVHAYVCVECGLVGNESEKIKVQIHTEIDTASPCFNADIVEQIVTVVYNCENCNLDFESIQQLNKHRSSSTHSDDLFKCSICDRAYNDYRRMRNHVKTHKAYEHWHENFPVCRLYVCNKQDCEESYPLWSSLYYHKKRPHRKQNADKVSKLDFKCQFCKKLCPTKMSLAVHVARSHNNKFLKCSHCHYSYKDQKCLQKHIDYMHTPVTCNQCSKTIKNRKNFEIHKHVVHQHTQRYFCSVCQKGFYHRSEMENHEKTTHTQVTYNCELCGFNTNYQKSMDIHMAKHNNQKEFQCEFCSKQFTRKHVLKQHMRRYHENTEYFCSYCDDSFPTLRLLGIHCAEHHKELDEEPLKKKFKQSAIYKMPLQQQRPSETDSSEIFEIEELVEEIDMDDDDDLQVNMNLII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -