Basic Information

Insect: Glossina brevipalpis
Gene Symbol: -
Assembly: GCA_000671755.1
Location: Scaffold351:55538-61308[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00029 0.017 15.2 1.0 1 23 189 211 189 211 0.95

2 15 0.032 1.9 8.8 1.2 3 23 219 239 217 239 0.95

3 15 9.7e-05 0.0059 16.7 0.2 1 23 412 434 412 434 0.98

4 15 0.0024 0.15 12.3 2.3 1 23 440 462 440 462 0.99

5 15 5.9e-05 0.0036 17.4 2.6 1 23 508 530 508 530 0.98

6 15 0.0033 0.2 11.9 0.6 1 23 551 573 551 573 0.94

7 15 0.061 3.7 7.9 0.5 1 23 579 602 579 602 0.96

8 15 0.28 17 5.8 0.3 5 19 613 627 610 628 0.91

9 15 0.00025 0.015 15.4 6.6 1 23 637 659 637 659 0.97

10 15 0.06 3.7 7.9 1.8 2 23 665 686 664 686 0.97

11 15 5.6e-05 0.0034 17.4 0.2 1 23 695 717 695 717 0.98

12 15 0.0048 0.29 11.4 0.2 3 23 725 745 723 745 0.97

13 15 2.6e-05 0.0016 18.5 0.5 1 23 751 773 751 774 0.96

14 15 0.18 11 6.4 0.1 1 23 784 806 784 806 0.97

15 15 0.0076 0.47 10.7 0.1 1 20 1405 1424 1405 1427 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00029	0.017	15.2	1.0	1	23	189	211	189	211	0.95
2	15	0.032	1.9	8.8	1.2	3	23	219	239	217	239	0.95
3	15	9.7e-05	0.0059	16.7	0.2	1	23	412	434	412	434	0.98
4	15	0.0024	0.15	12.3	2.3	1	23	440	462	440	462	0.99
5	15	5.9e-05	0.0036	17.4	2.6	1	23	508	530	508	530	0.98
6	15	0.0033	0.2	11.9	0.6	1	23	551	573	551	573	0.94
7	15	0.061	3.7	7.9	0.5	1	23	579	602	579	602	0.96
8	15	0.28	17	5.8	0.3	5	19	613	627	610	628	0.91
9	15	0.00025	0.015	15.4	6.6	1	23	637	659	637	659	0.97
10	15	0.06	3.7	7.9	1.8	2	23	665	686	664	686	0.97
11	15	5.6e-05	0.0034	17.4	0.2	1	23	695	717	695	717	0.98
12	15	0.0048	0.29	11.4	0.2	3	23	725	745	723	745	0.97
13	15	2.6e-05	0.0016	18.5	0.5	1	23	751	773	751	774	0.96
14	15	0.18	11	6.4	0.1	1	23	784	806	784	806	0.97
15	15	0.0076	0.47	10.7	0.1	1	20	1405	1424	1405	1427	0.93

Sequence Information

Coding Sequence: ATGGATATTAATATAAGATGGATACGAAGTGGAAACGTTTCAAGAATGGTGGGTGGTGGCACAGGTGAAGATGAAATGAAAACTACCGGTCAGCTATTAGTAGAATCGCAGCCATCGGATGAGTTAATGGCAAACGGTGGTGGTACAAATTCAGATTATATGGCGACGAGTATTGATCAAGTTGCTGCTGAAAATTTAATTTTTATGGCTCGTGACGGTCAGATGGTTACTGAGATTATAACTACACAAGGTATAGATGCTAATGGAGCTGTGGTAGTGGCAGCTAGTGATGGTACACAAATCGATTGTGAAGCTGTTATGGCACAAGCCGGTTTACTGCAACAACATGAGGATTCAGGTGGGGGTGTGTATGTTGATCAATATAGAGAGAATACACCGCAAATGGTTACCGAGGAGGTAATAACGGATGATTGGGTTCAACATCAGGGCGAGGAACGAGTTGAAATACCTGCTGAACAAATTATTGGTTCCAATTCGCAAGTTTTATTAGATATTGAGGTGCCTTTACCTACCGTTCAAGATGAATATACCGCCTTACGACCGTATCCATGTGATTTTTGTAGTCGTCGTTTTCGTAAAAAGACCAGTCTAATGAATCATATTGTAGCCCATCAAAATGATCGTCCTCATCTTTGCAAGTTGTGTGGTGCTCGTTTTTTAAGACGACAAGATTTGATTAATCATTTAAAGGCTCATGCTGAAGAATCTTCTGAACCTCAATTAGATGACAGTGATTTTATGCAGTTTGTTACCGATACTGTCCCAACTCAACAAAACTCTAGTGATAACTATTATGAGCAAGATTGGAATATTTCGACTACGGAATCAGTTACTACTCCTACAAAGTCTAGTCATCATCGTGTACAAGctactactactactactactactactactactactaAACAGAATGTGAACAGTAATTGTTTATCAACTTCAACAACTAAAGACTCAGAGTCAATAAAAGTACAATCAAGAGGAGGTCGCATTAGTCGTCTTAAATTAAAGGAGGAAATGTCCACATTTGAAATTATCGACATACAAAGTGCTCGCACATCAGAAGCTTCTCAATTAGCTTATGAATCTATGATGGATTCAGTTCAAAATCATAATTTGTCACCTTTAAGTGCCACCGTTAAGATCACTCAGGATAATATACGTGATTCAGATAAACAAATACAACGATTTCCTATTATCGATAATAGTAAACCGTTTGTTTGTCAGCAATGTGGACTTTCATTCGCCCGCGAAAAAGCTTTGCTGTCGCATGGAAAGACTCATAGTCAGGATTCGCCTTATGAATGCTCTCAGTGCAATGAAATGTTTTTAGATCATAACAGCTTGCAGGAGCATCAAAAAACTCATAATTTTgaggatagcaattctgaatatgatcctaacgaggggggagaagacgatgacgatgacgacgacgacgatgacgacgacTTGGAGGAAACACAAACAGAGACCGAGTCCGAACAAAAGTTATATGGTGACTTCTATTGCAGTAAATGCGGTCTATCATTTCATAGACTAGACTTGTTAAAGAGACATGCCAAAGTACACAATAAAACACAAACCGAAGAAACTGGTGGAATTGGTGGAGAGGATGATATTCGATATCGTCATTGTTGTAATACTTGTGGCGAATCATTTACCGAAGCTTTGGATTTATTAGCTCATGCCGAGATTCATGCTCGATATCCGCCATTCAAATGCATTCTTTGCGGTGAATCATTTTTTGAAGAGAGCTCTATTAAGCTTCATTTACAAACTCAACACGTTAACGAGATGACTGAAAATTCTTGTATACTTTGCGGTAAAGAGTGTCGCGATCGGAAAGCACTTATCAAGCATGCATGGGATCATTCCCGTGAAAAATGTCATTCATGTTCGAAATGTGGCAAGAATTTCCATAATAAAGCTCGTCTTAAACGTCATATGTCATCGCATCGTGATAAATCAGTTCAATGCGATGTTTGTCATGAAGATTTTCCGGACGGTCGTACTCTATCGAATCATCGTCATTCTCATAGTGCTACTTCGGCTGGAAAACTTTTTCCTTGTATGGAATGTGGAAAAACGTTCGGTTCACGTAGTTCCCAACAGATTcatgtacgtatacataccggtgaaaggccttacggttgtcgtttttgttggaaagctttCGCGGATGGTGGGACATTACGAAAACATGAACGTATACATACGGGAGAGAAACCTTACGTTTGTTCAGTTTGCCCACGTGCCTTTAATCAACGTGTTGTACTACGCGAACATATACGTTCGCATCATTCAGGCTTAGATGCTAAGCGTGGAACATATTATTGTACAGTTTGTTCGGTAGATTTGCAATCATCAGCTGATTTAATACAACATCTTATACAACATAGCGATACAAATACGGCCATGCAAAGACAACCAGTTCCCGGTCCACGTAAATATAAAAGACGTCGTAAATTAAAACCTCATGAAATAGCTCGTATGCGTCGAGAAGGCAATCAAATTGATCTTGGAAATACCAGTGAGATCGATTTATCCGATTTCGATATGGACACAGTCGATGATTTGTTAGGCATAACAGAAACTGCAACTTCCCCCAAcaatggcaatggcaacggcaacggcaacggcaacgCTACTACAACAATGATAGTAAAAAAGAGTAACGCTACCAGCTCTCAAAGCAAACGAGCCAAACGAAAATCATCCAAAGAAACTAATAACAATAAGAGCAGATCAATTAAAAATGAAGCAGCAGATTTAGATTTGGATGTCGAAATAGTTAATTGGGGAACGAAAAAACCAACATTTAACAATACAGAAGCGCAAGCAAAAACAACGCGAAACAATGTGGACTCATTGTTGAATAATCTCGAAAATGCTTTAGAGAATATAGATCATCTAGTAGTGGATAACAATAAATCTCCTTCAAGGGCGGCGGCATGTTGTACTacaaaacgtttaaaatcaaaaacgaacgccgcaaccacaacacaaaaagcacaacaacaGATTGACGAATTGACTAAGTCCACAATAAGAGAACCCGCAGTGACATTCACTAAAGGAGGAGGACGTAAAGTGAAATCGAAAAAATCAAACAATCGACCACAAATGATACGCACTGAAAGaaaaaaaTCATTCACTGCCGATGGAAATAAAAAGAAGACGATGTCTACTACCGTTACAACGCATCTCGCTcaacaacaacaccaacaacaacaacaaTCGCCAGATCAGAATAATTTACCTAAAAAATCAAGTATGGTCGATGATTATGAGATAATTACACCGCAATTGCAGCCACCAAATCAAATCAGTTCAAGTCCTTTACATATAAAACAAGAGCAATCGGATTTGCTTGGCCAAAGAAATGatagtcaactccatcatcatcatcatcatcatcatcatcatcaccagcaacatACAAATGATTTATATGATGCACATTTATTATTAGAAGCATCTGGATTACGCAATGATCTGGATGAGATATTGCATTCACCATTAAAATCTGAAAAAGGTGGACGTCGGCCACGTTTTACTAGTGAATCATCCTCACAATTTATGGCTGAACAATCAGAAGAAGAACAGCATTTCATAAAAATTGAACCTACTTCACCTGATTTAACCGAAATAGTAAATGGAGTTAGTGCAGGAACGGCCGGTGTAGAATTAGATTCGAGCCCTGAATTGCAAAGGAAAGCTACTATGCAGCAACGTCGATCTACGAGAGGATTAAAAACATTAAAATCTTTGaatagtagtagtagtcacttacaattggaatttacatcaaatgttacagaatcttgtacaacaacaccaactagaagcagcagcagcagcagcCGAACTACTAATATTATTAGTAGTAATCAATTGAGTCGTAATATTTGCAGTAGTACAACTACCAATTCAAATGATTTAACTCCTAAACGTATAATAGGAGGAGCAGCAGCTTTATCAAATTCCAATAGTGCAACATTAAACAGTACACCGACTTTTCTAGGTTACGGTGAAGGAGATAGTTTCACACCAACTGGAACTGGAACGTCCAGTTCAAATGTCAGTAGTCCATTTTCATCGATATCGGCAGTGGTATCAGCAGCGGATGCTACCGCAGCTGCCGCTGCTCAACAAACAACTCCTCCCTCTGCACGAAAGCCTCAGCGTTATTTCGAATGCGAAATGTGTTTTGCAACATTTTCCGATCGAGCTCAACTACTCGATCATGTACCCATACATATTTAG
Protein Sequence: MDINIRWIRSGNVSRMVGGGTGEDEMKTTGQLLVESQPSDELMANGGGTNSDYMATSIDQVAAENLIFMARDGQMVTEIITTQGIDANGAVVVAASDGTQIDCEAVMAQAGLLQQHEDSGGGVYVDQYRENTPQMVTEEVITDDWVQHQGEERVEIPAEQIIGSNSQVLLDIEVPLPTVQDEYTALRPYPCDFCSRRFRKKTSLMNHIVAHQNDRPHLCKLCGARFLRRQDLINHLKAHAEESSEPQLDDSDFMQFVTDTVPTQQNSSDNYYEQDWNISTTESVTTPTKSSHHRVQATTTTTTTTTTTKQNVNSNCLSTSTTKDSESIKVQSRGGRISRLKLKEEMSTFEIIDIQSARTSEASQLAYESMMDSVQNHNLSPLSATVKITQDNIRDSDKQIQRFPIIDNSKPFVCQQCGLSFAREKALLSHGKTHSQDSPYECSQCNEMFLDHNSLQEHQKTHNFEDSNSEYDPNEGGEDDDDDDDDDDDDLEETQTETESEQKLYGDFYCSKCGLSFHRLDLLKRHAKVHNKTQTEETGGIGGEDDIRYRHCCNTCGESFTEALDLLAHAEIHARYPPFKCILCGESFFEESSIKLHLQTQHVNEMTENSCILCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMSSHRDKSVQCDVCHEDFPDGRTLSNHRHSHSATSAGKLFPCMECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCSVCPRAFNQRVVLREHIRSHHSGLDAKRGTYYCTVCSVDLQSSADLIQHLIQHSDTNTAMQRQPVPGPRKYKRRRKLKPHEIARMRREGNQIDLGNTSEIDLSDFDMDTVDDLLGITETATSPNNGNGNGNGNGNATTTMIVKKSNATSSQSKRAKRKSSKETNNNKSRSIKNEAADLDLDVEIVNWGTKKPTFNNTEAQAKTTRNNVDSLLNNLENALENIDHLVVDNNKSPSRAAACCTTKRLKSKTNAATTTQKAQQQIDELTKSTIREPAVTFTKGGGRKVKSKKSNNRPQMIRTERKKSFTADGNKKKTMSTTVTTHLAQQQHQQQQQSPDQNNLPKKSSMVDDYEIITPQLQPPNQISSSPLHIKQEQSDLLGQRNDSQLHHHHHHHHHHHQQHTNDLYDAHLLLEASGLRNDLDEILHSPLKSEKGGRRPRFTSESSSQFMAEQSEEEQHFIKIEPTSPDLTEIVNGVSAGTAGVELDSSPELQRKATMQQRRSTRGLKTLKSLNSSSSHLQLEFTSNVTESCTTTPTRSSSSSSRTTNIISSNQLSRNICSSTTTNSNDLTPKRIIGGAAALSNSNSATLNSTPTFLGYGEGDSFTPTGTGTSSSNVSSPFSSISAVVSAADATAAAAAQQTTPPSARKPQRYFECEMCFATFSDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746908;
90% Identity: -
80% Identity: -