Basic Information

Insect: Glossina brevipalpis
Gene Symbol: grau_1
Assembly: GCA_000671755.1
Location: Scaffold97:530930-537591[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.1 68 3.9 0.2 3 23 204 225 203 225 0.93

2 18 4.4e-06 0.00027 20.9 2.1 1 23 258 281 258 281 0.94

3 18 0.00076 0.046 13.9 4.0 1 23 289 311 289 311 0.96

4 18 0.91 56 4.2 0.1 1 23 319 344 319 344 0.94

5 18 0.0071 0.43 10.8 1.2 2 23 350 371 350 371 0.97

6 18 0.5 31 5.0 0.3 2 23 380 404 379 404 0.89

7 18 0.04 2.4 8.5 7.8 2 23 411 433 410 433 0.96

8 18 1.2e-05 0.00075 19.5 1.7 1 23 438 460 438 460 0.97

9 18 0.016 0.97 9.7 3.7 1 23 466 489 466 489 0.97

10 18 2 1.2e+02 3.1 0.5 6 23 830 847 830 847 0.96

11 18 0.0037 0.23 11.7 6.6 1 20 853 872 853 875 0.94

12 18 0.0042 0.26 11.5 1.4 1 23 884 906 884 906 0.96

13 18 0.3 18 5.7 0.2 1 23 914 939 914 939 0.94

14 18 0.11 6.8 7.1 3.4 2 23 945 966 945 966 0.96

15 18 0.099 6 7.2 0.4 2 23 975 998 974 998 0.90

16 18 7.6e-06 0.00047 20.2 2.8 1 23 1005 1028 1005 1028 0.97

17 18 3.1e-06 0.00019 21.4 0.3 1 23 1033 1055 1033 1055 0.98

18 18 0.00029 0.018 15.2 4.3 1 23 1061 1084 1061 1084 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.1	68	3.9	0.2	3	23	204	225	203	225	0.93
2	18	4.4e-06	0.00027	20.9	2.1	1	23	258	281	258	281	0.94
3	18	0.00076	0.046	13.9	4.0	1	23	289	311	289	311	0.96
4	18	0.91	56	4.2	0.1	1	23	319	344	319	344	0.94
5	18	0.0071	0.43	10.8	1.2	2	23	350	371	350	371	0.97
6	18	0.5	31	5.0	0.3	2	23	380	404	379	404	0.89
7	18	0.04	2.4	8.5	7.8	2	23	411	433	410	433	0.96
8	18	1.2e-05	0.00075	19.5	1.7	1	23	438	460	438	460	0.97
9	18	0.016	0.97	9.7	3.7	1	23	466	489	466	489	0.97
10	18	2	1.2e+02	3.1	0.5	6	23	830	847	830	847	0.96
11	18	0.0037	0.23	11.7	6.6	1	20	853	872	853	875	0.94
12	18	0.0042	0.26	11.5	1.4	1	23	884	906	884	906	0.96
13	18	0.3	18	5.7	0.2	1	23	914	939	914	939	0.94
14	18	0.11	6.8	7.1	3.4	2	23	945	966	945	966	0.96
15	18	0.099	6	7.2	0.4	2	23	975	998	974	998	0.90
16	18	7.6e-06	0.00047	20.2	2.8	1	23	1005	1028	1005	1028	0.97
17	18	3.1e-06	0.00019	21.4	0.3	1	23	1033	1055	1033	1055	0.98
18	18	0.00029	0.018	15.2	4.3	1	23	1061	1084	1061	1084	0.98

Sequence Information

Coding Sequence: ATGAATTGTTGTGTATGTTTAATTAAAACTCCAAAGCTTCCAACATTGAACATATTTGATGAAGATGGTCTAAAATTAAAAATAAGTAGCATCATAGAACAACATTTATGGTTCAAACCGGAACCGAAAAATGCGGAAACTGAAATAATTTGTTATGAATGTTGGGAAAAGCTGAAAGATTTCCATGATTTTTATCAAAGTGTACTTAAAGTCCATGAAAATCATGTTGCTATGAGTAATGACTGCAATACTTCTGAATGCTCCATTAAAATGGAAGATGTCGATCAAAATGAGACGTTAGATTTTGGAAGTGAAGAATTGAACACTTTGGAAGAATTTTCTTCCATTGAGCCTGTTCCGAAATGCAAATTGGCTGAAGAAACAACAATTGAAACAAAAAGACGTAGCCTAAGAAGACGCAGAAGTAAATCAGCCTTTACCGAAAATCAATCGAACAATATAAACGAAATGGACCaaaattctgaaatagctgcaaaaactagtttgaagggggcggaaataaaaaagcaaccaaaaaaaCAGCGTGCCAAAGCTAAAGTTTTGTTGTTGGAAAATGAAAGTCTTATAAAGAAACACTTAAAAATGTTATGTGATCTTTGCCCTTACACAGGGATTGATTTCACTGATTTGACTCAACATTTTAAAGACCAACATCCTGGCGTAAAGTCTTACATTAAATGTTGTACGCGGAAACTTAATTGTCCTTCGGATATAATTCAGCATGCCCAACTGCACGAGGATCCGAATTGTTTTATGTGCGAAGAATGCGGTCGGACATTTTCTAATAAATCTGGTCTTAAGGATCATCATTTACAATATCATGAACCCGAAGAGAATTTAAATTTTGCTTGTGATATCTGTCCGCGGAAGTTTGCCAGGCATAACTTATTACAGCATCACAAATCAAAGCATGTTCCCAAAGATGAGCGATCCTTCTTCTGCAATACATGTGAGCCACCCAAAGCTTTCGCGAATGAATACATTCTACAAATTCATATCAATTCTCGGCACCGTAAAGCCCCGAACGTATGCCACGTGTGTGCGAAAGCAATACGTAGTAATCAATCTTTTGAAAAGCACGTGCGTTCCCATTTTGAGGATAGCGGCCCTCGTATAAAGTGTCCCCGAGAAGATTGCGATAGTTGGCTTAAAGATGATGAAAATCTCAAACAGCATTTAAGACGTTTCCATTGCGCTGATCAAAGTCTTGAATGCCCCAAATGTGGACGTTTATGTAAAAGCAAACATTGCTTAAGCAATCATTTGAAGAAAACTCATTCCACCGAAGTTTTTACATGCGAAGAATGTCaaaaaaaaTTCAAAAGTGCCAAATCTTTGAAAGAACATCGAGCATCCCACACCGGTGAACCGTTGTATAGTTGTCAGTTTTGTTTGCGCAGTTTTAATTCTAGCGCTAATATGTATTCACATAAAAAGAAAAAGCATCCAGTTGAATGGGAGTCATTATGCCAACGTAACAAAGCGTCACGATTTACCAAGCACGCCATTTCGACAGTCAATCTGCGGATATCTGAAACCGAACCAAGTGGCTTAGAAGGCGTAATAACGACTTATACCCATTTAACTTCGGCCGGACCAAAGGCTGAGAAATTTGCTGATGATGTTTGTGACAAATTCGCAACAAGAAAAAACATTGAGCCTAATTACAGGATATGGGAAAAACACTTATATTCGCAAGATAGGAAAATGTCAGCCACAAATGCCACTCACGGACATGCAATGTTGTGCCGTATGTGCTTACAAATATCAAATGAAACAATGCCTTTATTCTTCGAAGAGGGCAAAAGTTGGAATATTCCAGAAATAATAAATAAACATTTTTGGTTTAAGCCTTTTCCTAACGATAAAAGATCGTCGATAATCTGTAAAGAGTGTTGGCGCAAAATTTATGATTTTCATAATTTTTACGAATCTGTAAGAATTGCCCATGAAGATTATGAATTGAAAACGGAAGCAATCAGAAGCAAAAGTGAAGAAATTGAAATTAAGCAGGAATATGATGAACAATTCGCTGATACTCTCCCGCATGTTGAGACAGAAATAATTGTTGCTCCCGATCAAAGGTCTGATAGTGAAATGAATCCTTTGGATGAAATTGAACTTGAAAAAGATACAAGTGTCAATGATGGCAATTTTTCAGAAAATGACGAAGACAAAATCAAGCCTGATTTTAGTACGTCTGATAGCGAATATCTGATGCCAAGaaaaaaaaaagtcaaagttggtaagaaaagtgccaaacgaaaattaggtagaaaaaacaccgaagataccaaaaaaccgaagagaaccactagaaaaTACGATCCAATCTTAATAGAAAATTTAATTAAAAAACACATACGAATGGTTTGTAATCTGTGCGTCTTTATCGGCGAGACATTTGCAGATATTGTAGAACATTTTAATAGCAATCATCCTAACGAGAAACCATATGTTATGTGTTGTGAACGTAAATTGAATCAAAGATATTTACTGAATCAACATGCGCTAAAACACGAAGATCCGGATTATTTTAGGTGTCACAGTTGTCAAAAATCATTTGTCGATAGTAGTTGTCTAAGGGCTCACGTTCTATGCCATCATGCTACCGAAGAAGAAAAGACCCACGCTTGCGAGCTGTGTCCTCAACGTTTTGCACGCAAACAATTTCTAGAATATCACAAAGCGACTCATATACCTCGGGAGGAAAGGACTTTCATTTGTGCCAAATGTCCGACAAGGAAAGCTTTTGCTACTGATTACTTATTGCAAATACACTACAGCATAAGACATAAGCGAGAGGCTAACGTCTGTCATGTTTGTGCGAAGACGATAAACGATAAACGCTGCTTCGAAAAACATGTACGGGGGCATTTCGAAAACAGTGGCCCGCGTTTGCAATGTCCTCATCCGGGTTGCGATAGTTGGTTGAAAGACGAAGACAATTTAAAACAACACTTAAAAACTCACAATCCCGACTGCAAAACTTATCAGTGTCCGGAGTGCGGAAAATTTTGTAAAAATCGACGAGCTTTAACGAATCATAAACGTAATGCGCACTCCACCGAAATATACAAATGTGAACAATGCGATAAGGAATTTAAAAGAGCAATTGCTCTAAAGGAACATATGGCTCAGCATACTGGTGAGACTCTGTATAAATGTCCCTTTTGTACGAGAACGTTTAATTCCAACGCTAACATGCATGCACATAAAAAGAAGACCCATCCCGCGGAATGGAATGAATGGCGTAAATTACAGCGCGGTAGTATTCAAATTTTAAATCAGCGAAGTGAAATTTTAGAAAACAATTTCGGTAATAATATAGAATCAACTAagagagagagagCATTATAA
Protein Sequence: MNCCVCLIKTPKLPTLNIFDEDGLKLKISSIIEQHLWFKPEPKNAETEIICYECWEKLKDFHDFYQSVLKVHENHVAMSNDCNTSECSIKMEDVDQNETLDFGSEELNTLEEFSSIEPVPKCKLAEETTIETKRRSLRRRRSKSAFTENQSNNINEMDQNSEIAAKTSLKGAEIKKQPKKQRAKAKVLLLENESLIKKHLKMLCDLCPYTGIDFTDLTQHFKDQHPGVKSYIKCCTRKLNCPSDIIQHAQLHEDPNCFMCEECGRTFSNKSGLKDHHLQYHEPEENLNFACDICPRKFARHNLLQHHKSKHVPKDERSFFCNTCEPPKAFANEYILQIHINSRHRKAPNVCHVCAKAIRSNQSFEKHVRSHFEDSGPRIKCPREDCDSWLKDDENLKQHLRRFHCADQSLECPKCGRLCKSKHCLSNHLKKTHSTEVFTCEECQKKFKSAKSLKEHRASHTGEPLYSCQFCLRSFNSSANMYSHKKKKHPVEWESLCQRNKASRFTKHAISTVNLRISETEPSGLEGVITTYTHLTSAGPKAEKFADDVCDKFATRKNIEPNYRIWEKHLYSQDRKMSATNATHGHAMLCRMCLQISNETMPLFFEEGKSWNIPEIINKHFWFKPFPNDKRSSIICKECWRKIYDFHNFYESVRIAHEDYELKTEAIRSKSEEIEIKQEYDEQFADTLPHVETEIIVAPDQRSDSEMNPLDEIELEKDTSVNDGNFSENDEDKIKPDFSTSDSEYLMPRKKKVKVGKKSAKRKLGRKNTEDTKKPKRTTRKYDPILIENLIKKHIRMVCNLCVFIGETFADIVEHFNSNHPNEKPYVMCCERKLNQRYLLNQHALKHEDPDYFRCHSCQKSFVDSSCLRAHVLCHHATEEEKTHACELCPQRFARKQFLEYHKATHIPREERTFICAKCPTRKAFATDYLLQIHYSIRHKREANVCHVCAKTINDKRCFEKHVRGHFENSGPRLQCPHPGCDSWLKDEDNLKQHLKTHNPDCKTYQCPECGKFCKNRRALTNHKRNAHSTEIYKCEQCDKEFKRAIALKEHMAQHTGETLYKCPFCTRTFNSNANMHAHKKKTHPAEWNEWRKLQRGSIQILNQRSEILENNFGNNIESTKRERAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -