Gbre001814.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- -
- Assembly
- GCA_000671755.1
- Location
- Scaffold123:462260-466358[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00039 0.024 14.8 0.3 2 23 199 221 198 221 0.95 2 13 0.25 15 6.0 0.3 2 23 231 253 230 253 0.89 3 13 6.4e-05 0.0039 17.3 0.4 2 23 281 303 280 303 0.96 4 13 1.2e-05 0.00075 19.5 1.3 3 23 314 334 312 334 0.96 5 13 0.067 4.1 7.8 4.2 2 23 357 379 356 379 0.96 6 13 4.8e-05 0.0029 17.7 0.2 3 23 390 410 388 410 0.97 7 13 1.5e-05 0.00093 19.2 2.1 1 23 419 441 419 441 0.96 8 13 0.0002 0.012 15.7 3.6 2 21 451 470 450 473 0.94 9 13 5.7e-06 0.00035 20.6 1.4 2 23 493 514 492 514 0.97 10 13 4.4e-05 0.0027 17.8 0.9 1 23 520 542 520 542 0.96 11 13 3.4e-05 0.0021 18.1 1.4 1 23 547 569 547 569 0.97 12 13 5.6e-06 0.00034 20.6 1.7 2 23 576 597 575 597 0.97 13 13 0.04 2.4 8.5 3.7 1 23 603 626 603 626 0.94
Sequence Information
- Coding Sequence
- ATGTGCGAATGGCAGTTGTGGTGCCGTTTATGTGCAGATCGAAAATCGGGCGACTACGCCAATGTTTTCCATTACGAAGGTCTGGCCGATCGAAACGTAACTTTAGTCCAAGTTATTGAAAAATATTTTTCGGTGAAAATATGTCCAGAAGATGATTTGCCAAAAATGTTGTGTTCTCAATGCCTAGAGCTAATCAGTAACATTGTTGACTTTAGCGAACGTGTTATCAAAGTGCAGGAAATGTTCAATGATTTAATATATGACACTAAGCAAAGTACTGAAATAAATATTGATGTAAATGCGGATACGCTTTCAGCTGAAATACCCCTCTTATTAACAAATGTTATTCAAAGCCCACTGTGTGGCAAAATATCTGAAATAAAAGAAGAGCTCGAAGTGGaaaaaaagaaaaaCATTGAAGAGGTTGCAGTGTTTGAAGAAGAAGAAGACGTTTATGAACACACTGGGAATCAAAAAGATGGAGACTGTAGTGATTTAGATCCATTCAGTAGTATAGAAGACGAAAAATTTGATTACGTTTGTAATCGAAAGGCAGAGGAAAACAGAGCAATACAAGATATTGTATTGAATTTAGAATGCAATGAATGTACTAAAGTATTCGAGTCTTTTGGTTCCTATCGTGAACATCTGAAGTTAATCCATGGAAAAGCAAAGTCGAGAGATAAATGGAAATGTCCCAAATGTGACGAAATTATAACTTCAACATTCTTTTTTAAACTGCACCTTATAGATTCTCATTTTGGCAAGAAAGCCGAGAAAATAAAACACGAAAGATCGCGTGAATTGCGAGATAAATTAAGGGACGTTAATTTAAATATGCCATGCAATGATTGCGGACAGCAGTTCGAAACATTTTACGCTTATAGACGGCATTTGAAATCTATTCACGATAAAGGAGGAGCTCGAGAAAAATGGGATTGTCCTAAATGCAATAAAACCGTGACGACGAGTTTTAATTTCAAAAGACATCTTTTAAGCCATGTGAACGAAAAATCTGACACTAAGCACAGAGAAAAAATCCAGCTGCCAGACATTAAATTAGACATTACCTGTAAAGGATGCGCTGAACAGTTCAAGTCATTCCACTGCTATCGTCAGCATTTACGATTGGCGCATGACAAAGGTAGAGCACGTGAAAATTGGGATTGTCCGCTATGCGATGCCACAGTGTCAACTAGCTATAGTTTTAGACGTCATCTCATGACTCACATGCCGGATAAGGAAAGAAGGACTCATCCATGTTCGTTGTGCAATAAGAGTTTCGTTACATATTCAGAGTTGCGTATTCATCTGTTCAGACATAAACCACTCGAAGAACGCAATGTGATACCTTGTCAGCATTGCTCCAAACGCTTTTCCACCAATAAACTACTACAGGCACACATTAAATGCATGCATATTAAAGAGAGACAGAAACGTATAGCAGTCAAAAAGCACCAAGACGAAAAGCATGTTGTTTGCGAAGAGTGCGGCATGTGTTTGCGCAATAAAACAAATTTAAAAATTCATATGCAACGACATAGTGATAACGCTCCTTTTGAATGCGAAATATGCAAAAAGCGTTTTAAGAACCCTAGGCGGTTGAAGATACATAGTGAGATTCATGATTCACATAAACACGTTTGTACCATTTGTGGTCAACAATTAAACACTCGCAATACCTTGAAACGACATATGTTGGTGCATAATGGGAAAAAACAACAAAAATGTGATTACTGTGGCCAAGGATTTAACCATTCAACGAATTTGAAAATACACTTATTGTCTCACACTGGCCTTAAACCATACGCTTGCAATTTTTGTGATCGAACCTTCACAAATGGAGCTAACTGTCGTTTGCACAAAAAGAAAATGCATCCTGAGGAATTAGCTGCTTTAGAGGCCGCTGGTGGTGGACAACATATTGTTCAAAAAATACCAACTTTAGAAACCTTAAAAGCGCTTACCAAAGCAGCTAGTAATTTGAAACCGGTGGCTACAAAAGCAAGGGAGTGA
- Protein Sequence
- MCEWQLWCRLCADRKSGDYANVFHYEGLADRNVTLVQVIEKYFSVKICPEDDLPKMLCSQCLELISNIVDFSERVIKVQEMFNDLIYDTKQSTEINIDVNADTLSAEIPLLLTNVIQSPLCGKISEIKEELEVEKKKNIEEVAVFEEEEDVYEHTGNQKDGDCSDLDPFSSIEDEKFDYVCNRKAEENRAIQDIVLNLECNECTKVFESFGSYREHLKLIHGKAKSRDKWKCPKCDEIITSTFFFKLHLIDSHFGKKAEKIKHERSRELRDKLRDVNLNMPCNDCGQQFETFYAYRRHLKSIHDKGGAREKWDCPKCNKTVTTSFNFKRHLLSHVNEKSDTKHREKIQLPDIKLDITCKGCAEQFKSFHCYRQHLRLAHDKGRARENWDCPLCDATVSTSYSFRRHLMTHMPDKERRTHPCSLCNKSFVTYSELRIHLFRHKPLEERNVIPCQHCSKRFSTNKLLQAHIKCMHIKERQKRIAVKKHQDEKHVVCEECGMCLRNKTNLKIHMQRHSDNAPFECEICKKRFKNPRRLKIHSEIHDSHKHVCTICGQQLNTRNTLKRHMLVHNGKKQQKCDYCGQGFNHSTNLKIHLLSHTGLKPYACNFCDRTFTNGANCRLHKKKMHPEELAALEAAGGGQHIVQKIPTLETLKALTKAASNLKPVATKARE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -