Gbre008540.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossina brevipalpis
Gene Symbol
-
Assembly
GCA_000671755.1
Location
Scaffold58:1316570-1324389[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.011 0.69 10.2 2.6 1 23 121 144 121 144 0.95
2 13 0.00011 0.0067 16.5 0.9 2 23 151 173 151 173 0.97
3 13 8.4e-06 0.00051 20.0 6.5 1 21 182 202 182 205 0.96
4 13 2.9e-05 0.0017 18.4 4.6 2 23 464 485 464 485 0.97
5 13 2.4e-06 0.00015 21.8 6.0 1 23 491 514 491 514 0.95
6 13 0.0019 0.12 12.6 5.8 1 23 519 542 519 542 0.97
7 13 9.8e-06 0.0006 19.8 2.0 1 23 552 574 552 574 0.97
8 13 1.7e-06 0.0001 22.3 2.2 1 23 579 602 579 602 0.98
9 13 2.7e-05 0.0017 18.4 0.8 1 23 608 630 608 630 0.96
10 13 8.4e-05 0.0051 16.9 1.9 1 23 636 658 636 658 0.98
11 13 4.3e-07 2.6e-05 24.1 1.6 3 23 666 686 665 686 0.99
12 13 3.9e-07 2.4e-05 24.2 0.4 1 23 692 714 692 714 0.99
13 13 0.0025 0.15 12.3 0.0 1 23 719 742 719 742 0.95

Sequence Information

Coding Sequence
ATGGATATTAAAGTACAACCTAATCACAATATTATATGTCGAATATGTTTGCAGGAAAACATTAATTTATATCCTATTACGGATCAAGTTCATCTTGACGATAGCATAGCTACGTTGGCTGAAATTATAACAGAATGCACAAAATATCCAGTATTGGATAGCGATCAGTTGCCTACGCAAATTTGTAATGCTTGCAAGGAGGCAGCGCGCACAGCGTACTATTTTAAACGGCAAACAGAAAAAGCGTATTGTCGCCTGAAAATCTACTACGATAAAACATGGACACCGAATGATGTAAAGAAAGTTTCTAGAACTCCCACAACACGTGAACAGGCTACACAAACTGAACACAAAAATTGCCATCAGTGTGAATCGTGCCCGAGAAAATTTTTCAAGGAACGTGAACTGCGTGAACATCGAATGCAGGAGCATAACAATGATAATGGCCGTAAATGCCGTGTTTGCGGTGAGAAATTTATACATTTGGGTCAACTAAAAGTTCATCTGTCCACCGAACATCCGAATGAAGGCATACATTGTGACTTCAAATGTAGCACATGTTCGAAAGTGTTTTCACGTAAAGACCATCTGAAAAGGCATTTACGATGCGTACACAAATACAGATTGGAAGAAGATAAGATTAATAATAGCGTTCAGTTGACTCTTCATGAACCAGAGATCGAATTTGAAAAGCAAGTGAATCCGACAAGTAGTAGTAGTGCTATTACTGCTACCACTTTGATTGGAGTTGATACTGATACTAGTTTAAACAATCACAGCAGCCACTGGTTGGACTATGAGGATGAAGAGGAAGCTCTATCTCCAACTAATGATGACGACAATGTTAGCATGGCTGCAATTAATCCATTCTCCAGCGACGACGATGACGAAAATATATGTCACATaaaaaaaTGCAGTAGTTTAAGTAACGGAGAACACGAAGATGTAAAAGAGTTCACGGAATACGTAATACAGCCCGAGATATCAATAAAAGTGGAGAAATTGGAAGACAATTTTAATTTTAATGATTTCGTGAAAGAAATCGATAAATCGAGAGAAAAAGGTTTGGCAACAACAATAGCAAATCTAACAGGTTTAAAACATGAAAAAGCTCTTTCCGACAACGAAGAAGTACAAGAAGAAAATCAACAAAATCCAGGCGATGATAACAACTGTCACAATTATGGACCGATTTCTGATGTTGATGATATGGAGGAAAACGGCGTTGATGGTAAAATTTTGAAGCCAACAAAAAGCTTAAAAGTTCTTAAAACTATTAAACAGGAGACAAAAGAGACTGAGAAAAATATTCGaaaaaaaaaTAATTTTAACAGTATGAAGGGTCCAACTACACGACGACGTTACGGTGCGTCCAAGAATGAGGAAAATCGTTGCTTACAATGCAATCGTACTTTTTCACGTTACAATCATTTATTACGACACAtgttaacgcatagcgatgaaaaaccgcatgtgtgctgttattgcggtaaaCGTTTCTCGCGTAGCGATCATCTACAAAAGCATATCGCCAGCCTGCACACTGAAAAACAATTCAAATGTGATCAGTGTTCGTGCGCCTACGGACGCAAAGACCATTTGCAACGGCATAAAGAGACACGCCACAGTAATAATCCCCCGCCACCCAAACTGTTTGAATGCGATATGTGCGAAAAGAAATTTACAACTAAAGCGTATTTGATGAAACACAAACAATTGCATGGGGCTAGATTATATGTCTGCAAGCACTGCCCGGAAACGTTTAACGACAAAGACCTCCTTAAAGAACATCAGAAGAAAATGCATACACAACCACGAAATTTCCTATGCAGCATATGCGGTGATAGTTTTCAACGTAATGAATatcttaaaatacatatgcgtaggcataccggcgaaaaaccttataaatgccgtttttgcgagaaaggtttCCCGCGCAGCACCGACCTGAAAATGCATGAAAGATATCATATCGGCATTAAACCAAATTTGTGTAATCTATGCGGCAAAGGTTTTCATCGTCCTTACAATCTGACTATACACATGCGTACCCATACCGGCGAAAAACCATACAAATGCACCCAATGTCCGCAGGCATTTGCGCAAAGCAATGATTTAAAAGCGCATATACGACGCCACACGGGTGAACGGTTTCGTTGCGACGTCTGCGGGGCAGCGTTTCTACAACGTTATGGGCTGAAGGCTCACGTTAAAGCAGCACATGGTATAATAATGACCTCTTTTACGGGACGTTTGCAGAAAGTACAATTGCCTGTTGAATTGGCACAACAAATTCTAGAATCGCCATCACAACACCAACAACAGCAAGCAAACGTTTTACAAGCCTCCCCGCCACCAACTGCGATGCAATCTTCATGTGCTGCTACATCTGTTACACAATACAGTCTAAATCCAATACTTATGCAAACGAGTACTTTAACTGAAGCAAACACTCCGTTGGTTTTATCAGCCACGCAAATGTCACTGTAA
Protein Sequence
MDIKVQPNHNIICRICLQENINLYPITDQVHLDDSIATLAEIITECTKYPVLDSDQLPTQICNACKEAARTAYYFKRQTEKAYCRLKIYYDKTWTPNDVKKVSRTPTTREQATQTEHKNCHQCESCPRKFFKERELREHRMQEHNNDNGRKCRVCGEKFIHLGQLKVHLSTEHPNEGIHCDFKCSTCSKVFSRKDHLKRHLRCVHKYRLEEDKINNSVQLTLHEPEIEFEKQVNPTSSSSAITATTLIGVDTDTSLNNHSSHWLDYEDEEEALSPTNDDDNVSMAAINPFSSDDDDENICHIKKCSSLSNGEHEDVKEFTEYVIQPEISIKVEKLEDNFNFNDFVKEIDKSREKGLATTIANLTGLKHEKALSDNEEVQEENQQNPGDDNNCHNYGPISDVDDMEENGVDGKILKPTKSLKVLKTIKQETKETEKNIRKKNNFNSMKGPTTRRRYGASKNEENRCLQCNRTFSRYNHLLRHMLTHSDEKPHVCCYCGKRFSRSDHLQKHIASLHTEKQFKCDQCSCAYGRKDHLQRHKETRHSNNPPPPKLFECDMCEKKFTTKAYLMKHKQLHGARLYVCKHCPETFNDKDLLKEHQKKMHTQPRNFLCSICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGIKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCTQCPQAFAQSNDLKAHIRRHTGERFRCDVCGAAFLQRYGLKAHVKAAHGIIMTSFTGRLQKVQLPVELAQQILESPSQHQQQQANVLQASPPPTAMQSSCAATSVTQYSLNPILMQTSTLTEANTPLVLSATQMSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00750635;
90% Identity
-
80% Identity
-