Basic Information

Insect: Glossina brevipalpis
Gene Symbol: -
Assembly: GCA_000671755.1
Location: Scaffold69:1170961-1181353[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.013 0.78 10.0 0.4 2 23 23 45 22 45 0.96

2 18 0.0035 0.22 11.8 0.5 1 23 125 147 125 147 0.98

3 18 0.0017 0.11 12.8 1.4 1 23 161 183 161 183 0.97

4 18 3.5e-05 0.0021 18.1 1.7 1 23 189 211 189 211 0.99

5 18 9.8 6e+02 1.0 3.6 1 23 217 239 217 239 0.94

6 18 2.9e-05 0.0018 18.4 0.7 1 23 245 268 245 268 0.96

7 18 1.7e-06 0.0001 22.3 1.7 1 23 274 297 274 297 0.95

8 18 0.00039 0.024 14.8 1.6 1 23 304 326 304 326 0.97

9 18 0.042 2.6 8.4 0.6 1 15 331 345 331 348 0.90

10 18 7.2e-06 0.00044 20.2 4.2 1 23 352 374 352 374 0.97

11 18 0.00034 0.021 15.0 0.7 1 23 380 402 380 402 0.98

12 18 3.5e-05 0.0022 18.1 3.8 1 23 416 438 416 438 0.97

13 18 0.00023 0.014 15.5 3.9 1 23 444 466 444 466 0.99

14 18 0.033 2 8.7 2.9 1 23 472 494 472 494 0.98

15 18 7.7e-06 0.00047 20.2 0.9 1 23 500 523 500 523 0.96

16 18 1e-05 0.00062 19.8 4.2 1 23 529 552 529 552 0.96

17 18 0.0053 0.32 11.2 0.2 1 23 559 581 559 581 0.96

18 18 3.7e-06 0.00022 21.2 1.9 1 23 586 608 586 608 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.013	0.78	10.0	0.4	2	23	23	45	22	45	0.96
2	18	0.0035	0.22	11.8	0.5	1	23	125	147	125	147	0.98
3	18	0.0017	0.11	12.8	1.4	1	23	161	183	161	183	0.97
4	18	3.5e-05	0.0021	18.1	1.7	1	23	189	211	189	211	0.99
5	18	9.8	6e+02	1.0	3.6	1	23	217	239	217	239	0.94
6	18	2.9e-05	0.0018	18.4	0.7	1	23	245	268	245	268	0.96
7	18	1.7e-06	0.0001	22.3	1.7	1	23	274	297	274	297	0.95
8	18	0.00039	0.024	14.8	1.6	1	23	304	326	304	326	0.97
9	18	0.042	2.6	8.4	0.6	1	15	331	345	331	348	0.90
10	18	7.2e-06	0.00044	20.2	4.2	1	23	352	374	352	374	0.97
11	18	0.00034	0.021	15.0	0.7	1	23	380	402	380	402	0.98
12	18	3.5e-05	0.0022	18.1	3.8	1	23	416	438	416	438	0.97
13	18	0.00023	0.014	15.5	3.9	1	23	444	466	444	466	0.99
14	18	0.033	2	8.7	2.9	1	23	472	494	472	494	0.98
15	18	7.7e-06	0.00047	20.2	0.9	1	23	500	523	500	523	0.96
16	18	1e-05	0.00062	19.8	4.2	1	23	529	552	529	552	0.96
17	18	0.0053	0.32	11.2	0.2	1	23	559	581	559	581	0.96
18	18	3.7e-06	0.00022	21.2	1.9	1	23	586	608	586	608	0.99

Sequence Information

Coding Sequence: ATGCTGGCGAACGGTGACGCTGCTGCACTGGTGTTGTTGGTATTAGAAATGCTGTTTATCGATGTGATGTGTACCCTTTGCCAGAAAACTTCTACAGAACTAGATGAGTTTCTAGAGCATTTGCAAACCAATCATTACGAACCTCTCATACCTCGAGAAGAAAATTTTTCTTTGAATTGTAATAAAAAAGAGAAGGACGCGGAAGAAATTACGTTTGGAAAAGAAGAAAATATTAGCCATTATGTTTCAGATAAAGGTGAAGATTCAAATTCTTCATTGGAATATATCTTGAAGAGAGAAACGAAAATGATTACTTCCTCCAATGTGCAATTACCAGATAAAAATGAGAAAACTGCTGTAAATTCTAAACCATATAAATGTGAATACTGTCCTGCTCGCTTTGTTTGGAAATCAAGTGTTAGAGTTCATGAGAAACGTCATAATGTAGGAAAAACTGTTAGGAAGTGTAAGCGTGGACCATACATTTGCTCTCATTGCGATAAAGTGTTAAGGTCCCCTGGAATTTTAAATCAGCATTTGCATATGCACGATGGCTTAAAGACTTACAGATGCGAACAATGTCAAGCTACTTTTACATGGAAATCAAATCTTAAAACTCATCAGAAGATTCACGAAGGTGAAAGGCCCTTCTTGTGCCACTTTTGTTCAAATAGTTTTCTATCCGCGAAGCAGCAAAGATTGCACGAACGCAGTCATACCGGTGAGCGGCCATATATTTGCGAATTCTGTGGCAAGAGTTTTCCTTTCTCGTCCGGTTTAAGCAGCCATCGTAGTAGTCAGCATTTGAAAGAACGTAACTTTATCTGTGACAAGTGTGATAAACGTTTTAACAGACGCAGTCAGCTGAGATTACATCAGATAAATATGCACACTGAAAAGCCACTCAATCATGTTTGTACAATCTGTAAAGAGGCTTTCAAGGGaaaaaaacctttaaaaagtcatactaaaattcataaagaaaagaattttaaaTGTGTTGAATGTAACAAAATATTCGCCCGATATTCTGGTTTTGGTAAACGGCAAGGATATATTTGCCCCCATTGCCGTAAAGTGTTCAAAAGAACTTGGAACTTGAAGCAGCATTTGCATATACATGATGGTCTTAAGCCTTATAAATGTGAACATTGCCCAGCATCCTTCGCTTGGAAATCAGGTCTTAGAGTTCACGAGAAGCGTCATAAAGGCGAAAAACCTTTCATATGGCGTAAACGTGGAGAATATAATTGTCCCCATTGCTACAAAGTATTCAAAAAATCCTGGGATTTAAAGGAACATTTACATATACACGATGGCCTGAAGCCTTATAAATGTGAACATTGCCCAGTTTCCTTCGCGTGCAAATCAAATCTAAGAGCTCACGAGAAACGCCATGATGGTGAAAGGCCTTTTGTGTGTCACTTTTGTTCAAGTAGTTTTCCCTCCGCCAAGCAACGAAGGTTACATGAACGAAGTCATACCGGGGAGCGACCTTTTGTTTGTGAATTCTGTGGTAAAAGCTTTCCATTTTCGTCAGGGTTACGGAGCCATCGTAGCAGTCAGCATTTAAAAGAACGAAACTTCGTCTGTGGCAAATGTGATAAACGTTTTAACAGACGTAGCCAGTTGAGATTACATCACAAAAACATGCATACTGAAAAGCCTCGCACTCATGTCTGTACAATCTGTAACGCAGCTTTTAAAGATGTATATGTTTTAAAAGGTCATCTTACTATTCACAGGGAAAAAACCTATAAATGTTTAGAGTGTGATAAAAAGTTCGCCAATAATTCCGGCTTGTATTCCCATCGAAAAAGACATGAAAAACAAAGAGACAGATTCCTAAAGGAGGGTATGAGAACTGCAAAATACTTGTTAAACAACTATGGCCATGAGAGTTGGCCAATGAAAAATGAAAAGAAAACTTTTAACAGCAGTAAAACACCAGAAAATTTGAATCATACATAG
Protein Sequence: MLANGDAAALVLLVLEMLFIDVMCTLCQKTSTELDEFLEHLQTNHYEPLIPREENFSLNCNKKEKDAEEITFGKEENISHYVSDKGEDSNSSLEYILKRETKMITSSNVQLPDKNEKTAVNSKPYKCEYCPARFVWKSSVRVHEKRHNVGKTVRKCKRGPYICSHCDKVLRSPGILNQHLHMHDGLKTYRCEQCQATFTWKSNLKTHQKIHEGERPFLCHFCSNSFLSAKQQRLHERSHTGERPYICEFCGKSFPFSSGLSSHRSSQHLKERNFICDKCDKRFNRRSQLRLHQINMHTEKPLNHVCTICKEAFKGKKPLKSHTKIHKEKNFKCVECNKIFARYSGFGKRQGYICPHCRKVFKRTWNLKQHLHIHDGLKPYKCEHCPASFAWKSGLRVHEKRHKGEKPFIWRKRGEYNCPHCYKVFKKSWDLKEHLHIHDGLKPYKCEHCPVSFACKSNLRAHEKRHDGERPFVCHFCSSSFPSAKQRRLHERSHTGERPFVCEFCGKSFPFSSGLRSHRSSQHLKERNFVCGKCDKRFNRRSQLRLHHKNMHTEKPRTHVCTICNAAFKDVYVLKGHLTIHREKTYKCLECDKKFANNSGLYSHRKRHEKQRDRFLKEGMRTAKYLLNNYGHESWPMKNEKKTFNSSKTPENLNHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -