Gbre009665.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glossina brevipalpis
Gene Symbol
ham
Assembly
GCA_000671755.1
Location
Scaffold4:4147192-4184792[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.8e-06 0.0036 17.0 0.7 13 41 336 361 330 363 0.85
2 3 7.8e-06 0.016 14.9 2.0 17 44 368 392 362 392 0.88
3 3 0.021 44 3.9 0.6 18 41 398 418 393 420 0.86

Sequence Information

Coding Sequence
ATGAGAGAAAAAGACCATTCTCCTAGAAAAATGCTTCCTAGCCCAAAACAAGGGTCTGTTTACCCAATACTTGGCCTAGTGCCCAACAATTATGCCTCAAATGTACCTTACGATCTAACATCGCCAGCACGATCCTCTACATCGACCCTTACTACTACGTTGGCTTTATCTGCCCTTTGCAACAGCCAGAAAGATGCGAAAATTAAAGACAAAAGGCGTAGCGGCAATAGCTATGACCAACCGTTGGATCTTAGATTAGCACATAAACGAGAAATGATGGAGGATGAAAATAGTAATGTGGTAATGTGTAGTGAGCACTCTATTCGTAAGTCTCCTGGGGAAAAATCTTGTCAAAACTCTGAGTGCCAGAATGCCAGTTCCAAATCAGCATCCGATTTAGATGAAAAACCCAACATCACAAGCGGTGGTGAGCTGAATAACAACAATTTGCTAACACAAAACTCTGCCTTAGTTGAGTTCGATAATTTGATAAGTAAAAAGATGTTGCGAGTGCTTCGTGATAATGCTAAAAGCGAACGTAAAGGAAACTTGGATGCGCTTACTCTACAGAATGTCGATAAGCTGCCGTTCCCTGTTTCGGCTTTACATCCCACTTTACTGGAAACTATGGCCAAAGCCATACCGCTGCCGTATCGTAACCCATTTTTTCTAACCCAAGCTACTCACAGCGTCAATTCGAGTAACAATGCTTTCACGTTTTTAAATATTAATATTAATAAAGACAAGCCTCAGCCAACATCTGGTCCTATTGCGGCCAGCACCTCCACACCTTCTTTAAACTCACTTCCTCCTGAGTCACCTTTAAGAGATTTGAGCTTTGAACATTCACGAGGACGTAATAGTTTAGCCGACTCATTGCTACTCAATCACAACGGACCGGCTCCCGCTACTGCTACACAAAATAACCAGCCTTCACAGTATCGCCATAAAAGAAACTCTGGCAATCGCCCCAACTCTCAAGTAGGCCAGAGTGCGCCCTATAAATGCAAGGATCGTTACACTTGCAAATTCTGCGGCAAAGTATTTCCTCGTTCAGCCAACCTCACCAGACATCTTAGAACTCACACTGGCGAGCAGCCCTATAAATGCAAGTATTGCGAACGTTCCTTTAGTATTTCCTCAAATTTACAGCGTCACGTGCGTAACATACATAACAAAGAGCGACCATTTAAATGTGAAATTTGTGAAAGATGTTTCGGGCAGCAAACTAATTTAGATCGCCACCTaaaaaaaCATGAGGCCGATGCTGTTTCGATGGGTTTGGGCCTTAATGAACGTCTGCGCGGTGGTTTGCGGCGTTTTTGTGAAAATCCTGCAGAAGAATCCTATTTTGAGGAGATCCGTTCCTTTATGGGTAAAGTTACGCAATTACCTCTAACCAATCCCGGTAATGTTAACAAACCTAACCAAGCTGAAAATAACCCGCCAATAGATATGCATTCGCCCGCTAGGAGTTCCTCATATGCTCCCTCCGATCCAGACTCTACAGCCAGTGGTTTACGTATTATTACACAAGATGAGAATAGCAACCATAGTATTCAATCGTCAGAAGCCCATCAAATTTCACAAAATAATCACCAAAATGAAAAACAGACTCCTTCCCAGCCTTCTTCACCTAATCTGAACAATAATAACGAGCTCTCGTCTACTACCTTATCGTCTTCGAAGCGTAAACTAAGTCCTATGCGTCTTGAATCAGCACCCAGAACAACAACAACATCTGCAACCACTTAA
Protein Sequence
MREKDHSPRKMLPSPKQGSVYPILGLVPNNYASNVPYDLTSPARSSTSTLTTTLALSALCNSQKDAKIKDKRRSGNSYDQPLDLRLAHKREMMEDENSNVVMCSEHSIRKSPGEKSCQNSECQNASSKSASDLDEKPNITSGGELNNNNLLTQNSALVEFDNLISKKMLRVLRDNAKSERKGNLDALTLQNVDKLPFPVSALHPTLLETMAKAIPLPYRNPFFLTQATHSVNSSNNAFTFLNININKDKPQPTSGPIAASTSTPSLNSLPPESPLRDLSFEHSRGRNSLADSLLLNHNGPAPATATQNNQPSQYRHKRNSGNRPNSQVGQSAPYKCKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHEADAVSMGLGLNERLRGGLRRFCENPAEESYFEEIRSFMGKVTQLPLTNPGNVNKPNQAENNPPIDMHSPARSSSYAPSDPDSTASGLRIITQDENSNHSIQSSEAHQISQNNHQNEKQTPSQPSSPNLNNNNELSSTTLSSSKRKLSPMRLESAPRTTTTSATT