Gbre009848.1
Basic Information
- Insect
- Glossina brevipalpis
- Gene Symbol
- bab1
- Assembly
- GCA_000671755.1
- Location
- Scaffold86:357951-359878[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-18 1.5e-14 53.1 0.0 1 43 54 97 54 99 0.95 2 2 2.9 5.3e+03 -3.1 2.8 3 24 191 215 189 216 0.70
Sequence Information
- Coding Sequence
- atgttagaaagttcacatgcttggatgagttccggagcttctatTGCAGCAGACAGTTACCAGTATCAACTGCAGTCGATGTGGCAAAAGTGCTGGAATACAAACCAAAGTCTAATGCATCATTTGCGTTTTCGTGAGCGTGGTCCATTAAAATCCTGGCGACCTGAAACGATGGCTGAAGCAATTTTTAGTGTTTTAAAAGAGGGCCTCTCACTATCCCAAGCAGCACGCAAATACGATATACCATATCCAACTTTCGTTTTGTACGCTAACCGGGTTCACAATATGTTGGGGCCTTCGATAGATGGGGGCCCCGATCTCAGACCGAAAGGCAGGGGACGTCCTCAACGTATTTTACTTGGCATTTGGCCAGACGATCATATTAAAGGAGTTATTAAAACTGTTGTTTTTCGCGACGCTAAAGATCTTAAAGAAGAAACCTTTGCACATCTCTCATATGGTCGCCACTCGCCAGTCTTTTCATTTCAAGAAAGTGCACTAAATTATGGCGGTCCAAGCAGTCAGTGTGCGAATGGTATGCCTGCACCTGCAAGTGATCAAATATCACAAGAAGCTACGGCGGCGGCTGTAGCCGCCGTTGCTCATAACTTTCGGCAACAAATGCAAATGGCTGCGGCAGCACAACATCAGCAACACTCTGAAAATCTTGGAGCTGCGAGTCTATTTAACCTGCCACCTCATTTGATATCCGCAACAGGACCATCCGGTACGGGACCTATGGTTGGTCCACCAGGTCCTGGTAGTATAGTGCTACCGAAACCAAGTATTTCGCCAGCCCTAAGTACTACATCGAATCCTGGTGGTGGCAGTGCAGTGGTCGGACCGCGTCATGCTCCTTCGCCATGTGGACCCACCTTACCAGGGATGCATCAGTTGCCGCCAGGAATGGCTGTAGCTTTGCATATGGTCGGTGGCACAGGACGATGTGAAACCGCAACGATGTTAAACCAACAGCAACATCAGCATCAAATCCAACAGTTACATATGCAACAGCAACATGCTATTCATCAACAGCAACAACAAAAACATCATCAGCAAATGATTTTCGGTGCAAGTTCCATTAGTCATCCACCTATTTCCGCTGCAGCAACAGCAGTGTCAGCTTCCTCGCAGCACTCAATTGCCACAACAATTAGTGCGCCACAAACTAAATTTTCTTCCTCTTCGATATCTCCGTCATTAGAACGACAACGTCAAAGCACGCCAGGGAACACAACGCTCCGTTCTTCACTTACCGAACTAGGTCTTGATTTTGGTTACAGTAAAACTGCGCAGTCTTTCTCACCATCCCGTCTATTTCCTGACGATCTAGCCGACCTGGTGGGTGCGTCACCTTCATCATCCACCTCAAAGAAATCATCAACGTTAGCTGATACAAGTTCGACCATTACTATGGCAAAATCGAACACTCCATCTGAAATTTTAACTTCCGCCGCGTGCacaacaactacaactactacaactaGTAACAAAAGTTCCAGTAATAGTGTGAAACTAGAACCGATCACTACAAGTACCGAATAA
- Protein Sequence
- MLESSHAWMSSGASIAADSYQYQLQSMWQKCWNTNQSLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDDHIKGVIKTVVFRDAKDLKEETFAHLSYGRHSPVFSFQESALNYGGPSSQCANGMPAPASDQISQEATAAAVAAVAHNFRQQMQMAAAAQHQQHSENLGAASLFNLPPHLISATGPSGTGPMVGPPGPGSIVLPKPSISPALSTTSNPGGGSAVVGPRHAPSPCGPTLPGMHQLPPGMAVALHMVGGTGRCETATMLNQQQHQHQIQQLHMQQQHAIHQQQQQKHHQQMIFGASSISHPPISAAATAVSASSQHSIATTISAPQTKFSSSSISPSLERQRQSTPGNTTLRSSLTELGLDFGYSKTAQSFSPSRLFPDDLADLVGASPSSSTSKKSSTLADTSSTITMAKSNTPSEILTSAACTTTTTTTTSNKSSSNSVKLEPITTSTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00749617;
- 90% Identity
- iTF_00749617;
- 80% Identity
- -