Gaus017213.1
Basic Information
- Insect
- Glossina austeni
- Gene Symbol
- -
- Assembly
- GCA_000688735.1
- Location
- Scaffold320:115383-122831[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.99 75 4.2 0.2 1 23 1118 1141 1118 1141 0.93 2 12 0.29 22 5.9 3.0 1 23 1314 1336 1314 1336 0.92 3 12 0.00026 0.019 15.5 2.2 2 23 1339 1360 1339 1360 0.96 4 12 5.4e-05 0.0041 17.6 0.2 3 23 1368 1388 1366 1388 0.98 5 12 2.2e-06 0.00017 22.0 5.8 2 23 1395 1416 1394 1416 0.97 6 12 4.5 3.4e+02 2.1 0.1 5 23 1430 1448 1429 1448 0.96 7 12 0.00072 0.055 14.1 0.2 2 23 1487 1507 1486 1507 0.97 8 12 4.1e-05 0.0031 18.0 0.6 1 19 1513 1531 1513 1535 0.95 9 12 2.3e-05 0.0018 18.8 1.7 1 23 1543 1565 1543 1565 0.98 10 12 9.4e-05 0.0071 16.9 6.5 1 23 1571 1593 1571 1594 0.96 11 12 4.9e-05 0.0037 17.8 6.1 1 23 1599 1621 1599 1621 0.98 12 12 0.00042 0.032 14.8 6.2 1 23 1627 1649 1627 1650 0.96
Sequence Information
- Coding Sequence
- ATGGAATATGTTGAAGAAGAAGACGGCGAATTCTCTGTCATTGAGCGCATCTATCAATCACCTCCTAGTGTTCTTCATATTCATGACGAAGACGACGTTGATGGCGATGTCAGCAGCAAAGAAATACTATCTCCTAAAGTTAGTGGAAAGAAATCCAAGTCTTTTGATAATGAACAAAAATCTGAGAAAGTTGATAATTCTGATAACGAAGAAGATTTCATGAGTATTTCAGGGGAAAGTGACCAGGAAGAGTTTGTGGCGAGTAATCATCCAAAAAGTAAGAAACCCGACATTGATTCCATATCCAAGCAATCAGATGTGAGTTTAACTAATGAAACAGAAACGCTGTCCATTTCAAAAATAACTCCATCGACGAATGCAAGTAGTCCTCTCAGTCAGGATTCAATACGaaaaaaaTCACCCAAAAATACTATCACAGTGTTGAGTGATGTTCAATTAAATTTAAACGAATACTTGGATTTAGTGGGCAACATCATAGCTTCTAGCAAGATATCTCCTCAACGAAAAACCCTTTCGGCCATAGCACCGGTACCTTTAGTAAAAATTGAAAAGGAAGAACCATTAGACGACGATGAGGACCAAATACAAGAACATCCAACGGATGAAGGTACATCTACTAAACCACCACTGAAAGCCGACAAACATGAGACTGAAAAACCAACTGACACCTCAATTCAACCCACTGAGGAAGATGAGAAGAAACCCGACATTTTCGAATGCAACATTGAAAGTGACAATAGCAAATGCGGCACACCATATTCCAGTAATTGTTCTGGCCACGCAACTAGCGTAATACGCATGGCAACAACTTCTACTAGTCAGCAGATGCAACAAACAAGCCATGTAAGCGAAGGTCTGTTGGAGGAGGGGCTACTAGTGAAGCAGAAGGAAAAGGAGACTGTATATGCAGATAAAGAACCGAAAAGTATTACCACACGAAGAGACTCAGATAGAGCTGAGGATCTCTCAAAACCGCAGCCCAAAATTCAACATAATCTGACGGGTTTCACTTCAGACTATTTAAGGAAACCTTTTGCTACTGCCATAGGACGTAAGGTTCCTAAAAAGTTAGTTATCAAGCCCAAATCCTCAAAGACTGAAATATCGGCAACAAATGCTTGTGCATCCTCACCAACGGGTGACGATCAAAAACCCTCAACTTCAGCCAAAGCTCAAGAAGAATATGCTAAACTTAAACAACGAATATCAACTGACAGTTCTAATGAAACAACGCCTTTAGTGCAGCAAAAAGATATGTTGTTTGCACAGTTGGATGAAAATTATAAAGAAAGAAATCGTTGCAGTAAAACGACAGATTGTGATAAGCTACAGTTGAAAACTTCGCGCGAATTTGACTACATTGACGATAATGAACGTGAGCAGTTGTCTGTTGCAGAGAAATTATCGAACTTAAGTAAAACTACGACAATAGTTGAGAAAGAAATCAATAAGTCTTATGCATCAGCAGAAAAATGCAAAAGGCTGGAGGAATTGCATCAACACGTTATAATGGATAAGAGATCCAACGAGCGGCCAACTTTAACTACAGCAAATCATTCTTCAAATCTGACACCGACGCAAGATGATCGTGAGAAACGAGTGAAGAAAAATTTGGAATTAATATCATTTAGAGAGCATGGAGAGCATGGTCTAAAACAGAAACAACGGACGATTATTGAGGATATAGTGAAAGTGAAAAGTGAGCCTTTAAGCGGTGGAAACTATGAAAATCAATTGCCAGAAACTGACATGAATATCGTGGAACCGCAGCTCGAGTGTCCTTCTGCACACACCGTAATGGAGTGCAAAGAGGAGAAACCCTGTCTTACGGAAACTTGTCTACCGTCAAGTACTCCACACTTAAAAACCGAAAGTAACATTGCCGACGACGCTCGGGTCTTATATGATTTTGCCAATTCAAAGAAAGTCACCGGGACTGAAACTTCAAGAAAAGAATTTTTATCATCCTCCGTGACTTTTTCAAAACAGAAAATGCAGGAGTTCCCAAACAGTTCAAATATTGATTTTAGCTCCGCTCAATCCGAAAAGGAGAATAAATCCGAAATGGTTGTTATAAACTCTTCCTATTCTTCAGAATCCGCCGTTGATGTTAACTTACAGAACTCTTCTTTTCCGCAAAGTTCTTCTGTGCTTCCGTTCAATAACGCTCAACCAAACCAAGCGCAAAATTATATCGACTATCCCTTCGGATTTCTGTACAATAGCAACAACAGCAATAATAATCATGTGTCACAACAAGAGGATATTAAACGTTCTCAAACTTTTTATTCAAATATGACACACAGTGTTTCAGTCTCAAATAGTAGTAATTCGAATTTGCTCGAAGATAGTTCCGCTATGAAACAGGATCAGAGTCTTATATCTAATCAGCAGCATACTCAAAATCGAAATGTGACGGAATGGTTTAATAGCACCGATGCGAATAATACTTCATCAGTCTCTACGGCAGTCACCAGCAACATTGAAGTTAGTTTTAATTCACCTTTGTCGGTTGATTGCAATGCATCCCTCGATGGCGGCGATGTTAGTAAATATTTAGATTTAGATGCTTGCAAACGAGAACAGAACTTCGACATAATAGATAGCAGCAGAAGCCAAAATCCGCCTCAGCCACCTCCTTCCTCGCCAAATTCATGTTCGTTTGCTGGAGCTACTGACAATAGTTTAAGTGGCGTTTGCCCTGTATCCGCTGCTCTTAATATACGAACTGATGAGAAAATGCCTGCCAAGGGGGAAATCTCTGAACAGGAAAGCAATTGTGATATAGAAAATTCGTGGAGTCAGCCGATGTACGGCGACATATCGGCGCGATTTTTCAGAACATCCTTTCCGGGCATGTTCACCCATGACAGTGACTGGCATCACGATGACTACTTTACAGTTCAAGACTTGAGTGCGTCGACCACGGCACCTGCGACGAATGGCAGCAGTCGGACTAGAAGTTTTGACCTCCGCCTGCCGTCGGAAACAACTAGTGCAGTAGCAGATAATTTTATTTCCAGCGGTTTACAAATCTTTTCCCAGAATAGCCAGGATAACATTAGAGGTAACGCAGACATATTACCTTCGACATCAGGCAGAGGCAAAAAGAAACGTAAGCGAATTTCGCAAGACGATAAATTAAATGTGACTACTTCACTGACGCAAGTTCAACATATTCAAGAAACGAGGGAGCCGGAATCAACTGATTTTGAGCTACCGCAAGCATCAGCAGTACCCTCATCGTCCGAATTTTTAGCTGGACCTGTCGTCCTAGGAGATTCCTCGCTTGTACAAAATTTAGGTCAACAAAAACCACGGGAAAAGACGTACGAATGCGCACGCTGCTTCGCCAAATATTCCAAATTAAAAGATCGGAATGCTCATATGATTGCAGCTCACAATTATGTACGTCAAAATCGGAAACTTGTTTGTCCTCAAACGATTATCACTTCAACTATAACAAGCAACGAAGCTGATGTCACCGATTTGACACCAAGTACCAGTGAAGGAGTCATATTATCAAAATCCCTTCAAATAGAAGATCTACCTGAAGATTCAAAGCATGGCATTGTCAAAATCGAAACGGAACCGCATGCCCCCGATGTAGATCCTGTAAATAACGACTTGGTGGCAGAGATGCCAAAAGAACTCGATGATAATAAACAAAATGTGTCCATAGTACCGGTGGAGGCTTCGTACACTGCTACGGAATCTAATGTTACAACGTCAATTGAAAAAGAGGAACAAACATCGACGCTAGATATTAAATATCCTGGTTTGCAACGTTTATCTCTCAATGCGCCCACCACAAAGTTGACTACACTCTATCGCATGCTGGTCACGTATAATATGAGCAATTTAAAAATAAAACAGGATCTAACGGAATTAGATGAGAAGCTAATGGAATCGTTGATATTCTATTGTCATGTTTGTCGGCAAAGTTTTTCGTCGGTGAAATTTTATGACATTCATTTAACTGAGCATCCTGCTGAATGCTTTTCATGTGGAAAGAAATTTCAAAGATGGAAAAACCTATCATTACATTTAAAACGTCATATGGGTTGGAAAGAGTTTGGTTGCAATGTTTGCGaaaaaaaaTTCGTTGTACGTAGTGCGCTAGTGGAGCATATGCGAATGCATTCTGGTCAGTCACCTTTGAAATGTAAAATATGTGGTAAACACTTTAAGCGGTATTCGAATTTAACACAACATCGCAAACGTCATACTAAACAGCAGTTAGTGAGaaaaaaaGAATATGTATGTTATTGCGGTGAAGTGTTGCCATCGAAGGCGAGATTTTTATGGCACAAAGAAACACACGATTCAAAGCCTAAATGCTGCCCACATTGCTGTGATCGTTTCGTTCATGTTAATTCTCTTAAGCGACATATACGTCTCGCGCATTCGGATAAGTTCGATTACGTTGAACCAATGGAGTGTCCGATATGCAAGCAAGTATTTTCGAAGGCATCAATGAAATCGCATATGGCCACTCATTCGACCGAAAGTCAATACGATTGTACTATATGCAGTAAATCATTCTCAACTAAATGGAACTTGAAAATACATTCGTGGGTGCATGCGAATCGTACCGCTAAGCCGTTTAAATGCGAACACTGCCCTAAGGCATTCGTGCGCGAGCTTGATTTCAAGAATCACATCAATTCGCACAAACAAATCCGACCATACACATGCGAAGTTTGTGGATGCAAATTTATAAGGAAATATAATTATATGCGCCATCGTAGGGAACATCATGGGGATAAAAAGTTTACATGTCAAATATGCAAGAAATCGTTTCATCGCCATTACTATCTTATTGAGCACATGCGCATACATACCGGCGAAAGACCCTTCCAATGCACGATTTGTGGTAAAAGTTCCACTACAAAGACGAATCATAATAAACACATGAAAATTCATCATTCTCGCGATCCATTTACAGTGGAAGTATAA
- Protein Sequence
- MEYVEEEDGEFSVIERIYQSPPSVLHIHDEDDVDGDVSSKEILSPKVSGKKSKSFDNEQKSEKVDNSDNEEDFMSISGESDQEEFVASNHPKSKKPDIDSISKQSDVSLTNETETLSISKITPSTNASSPLSQDSIRKKSPKNTITVLSDVQLNLNEYLDLVGNIIASSKISPQRKTLSAIAPVPLVKIEKEEPLDDDEDQIQEHPTDEGTSTKPPLKADKHETEKPTDTSIQPTEEDEKKPDIFECNIESDNSKCGTPYSSNCSGHATSVIRMATTSTSQQMQQTSHVSEGLLEEGLLVKQKEKETVYADKEPKSITTRRDSDRAEDLSKPQPKIQHNLTGFTSDYLRKPFATAIGRKVPKKLVIKPKSSKTEISATNACASSPTGDDQKPSTSAKAQEEYAKLKQRISTDSSNETTPLVQQKDMLFAQLDENYKERNRCSKTTDCDKLQLKTSREFDYIDDNEREQLSVAEKLSNLSKTTTIVEKEINKSYASAEKCKRLEELHQHVIMDKRSNERPTLTTANHSSNLTPTQDDREKRVKKNLELISFREHGEHGLKQKQRTIIEDIVKVKSEPLSGGNYENQLPETDMNIVEPQLECPSAHTVMECKEEKPCLTETCLPSSTPHLKTESNIADDARVLYDFANSKKVTGTETSRKEFLSSSVTFSKQKMQEFPNSSNIDFSSAQSEKENKSEMVVINSSYSSESAVDVNLQNSSFPQSSSVLPFNNAQPNQAQNYIDYPFGFLYNSNNSNNNHVSQQEDIKRSQTFYSNMTHSVSVSNSSNSNLLEDSSAMKQDQSLISNQQHTQNRNVTEWFNSTDANNTSSVSTAVTSNIEVSFNSPLSVDCNASLDGGDVSKYLDLDACKREQNFDIIDSSRSQNPPQPPPSSPNSCSFAGATDNSLSGVCPVSAALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYGDISARFFRTSFPGMFTHDSDWHHDDYFTVQDLSASTTAPATNGSSRTRSFDLRLPSETTSAVADNFISSGLQIFSQNSQDNIRGNADILPSTSGRGKKKRKRISQDDKLNVTTSLTQVQHIQETREPESTDFELPQASAVPSSSEFLAGPVVLGDSSLVQNLGQQKPREKTYECARCFAKYSKLKDRNAHMIAAHNYVRQNRKLVCPQTIITSTITSNEADVTDLTPSTSEGVILSKSLQIEDLPEDSKHGIVKIETEPHAPDVDPVNNDLVAEMPKELDDNKQNVSIVPVEASYTATESNVTTSIEKEEQTSTLDIKYPGLQRLSLNAPTTKLTTLYRMLVTYNMSNLKIKQDLTELDEKLMESLIFYCHVCRQSFSSVKFYDIHLTEHPAECFSCGKKFQRWKNLSLHLKRHMGWKEFGCNVCEKKFVVRSALVEHMRMHSGQSPLKCKICGKHFKRYSNLTQHRKRHTKQQLVRKKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLKRHIRLAHSDKFDYVEPMECPICKQVFSKASMKSHMATHSTESQYDCTICSKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVRELDFKNHINSHKQIRPYTCEVCGCKFIRKYNYMRHRREHHGDKKFTCQICKKSFHRHYYLIEHMRIHTGERPFQCTICGKSSTTKTNHNKHMKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -