Gaus006524.1
Basic Information
- Insect
- Glossina austeni
- Gene Symbol
- -
- Assembly
- GCA_000688735.1
- Location
- Scaffold2:3027284-3027721[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-06 0.0037 17.0 0.0 25 44 2 21 1 22 0.94 2 3 0.0021 5.1 7.0 0.0 27 37 51 61 50 66 0.90 3 3 5.5e-18 1.3e-14 53.7 0.1 4 41 90 127 90 129 0.92
Sequence Information
- Coding Sequence
- ATGAAATTTGACATATCGAAAACGGTTCTTTGGCGCCGCGTACGTAAACATCCTGATTATATGAAAACTGCCCGCGAAAATCCCATAGTTACTAAAGCCTATGAACGTCTAAAAAGTGGTGAATCTTTGAAAAGCATCAGCCTAGATTTGGATATTCCCATGTCGACTTTACATCGTCATAAAGTGCGACTATCGCAACAGGGTCAATTGCCGGATTTTGTTACATGCAAAAGACGCGATTCCACCTCAAAGGATGATCTCAAGCTTAAATTGGCCAAGGCTGTGCAAGCTTGTGTGCAAAACGGCATGTCCCAAAATCATGCTGCCAATGTGTACGGGATATCTAAAAGCACATTATGGCGCCACCTGCAAAAACGAGTCGCGGAAGCTGAAGCATCTATGGAAGAAGACGAAATCAAAGAAGTTATACTTTCATAA
- Protein Sequence
- MKFDISKTVLWRRVRKHPDYMKTARENPIVTKAYERLKSGESLKSISLDLDIPMSTLHRHKVRLSQQGQLPDFVTCKRRDSTSKDDLKLKLAKAVQACVQNGMSQNHAANVYGISKSTLWRHLQKRVAEAEASMEEDEIKEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -