Gspa033229.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438681.1:4134546-4151532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.8 4.9e+02 2.6 2.5 1 23 406 429 406 429 0.93 2 15 5.3 5.4e+02 2.4 0.6 5 21 493 509 492 510 0.91 3 15 0.0021 0.22 13.1 0.4 1 23 521 544 521 544 0.92 4 15 0.0057 0.57 11.8 0.1 2 21 582 601 581 602 0.94 5 15 2.8 2.8e+02 3.3 1.5 1 13 900 912 900 919 0.76 6 15 5.6 5.7e+02 2.4 4.7 1 23 932 954 932 954 0.96 7 15 0.057 5.7 8.6 0.5 2 23 960 981 959 981 0.96 8 15 0.74 75 5.1 0.8 1 10 1004 1013 1004 1025 0.71 9 15 1.7 1.7e+02 4.0 10.2 2 23 1065 1086 1064 1086 0.95 10 15 0.0011 0.11 14.0 0.2 2 23 1102 1123 1101 1123 0.97 11 15 6.9e-07 7e-05 24.1 2.7 1 23 1129 1151 1129 1151 0.99 12 15 1.2e-05 0.0012 20.2 0.4 2 23 1157 1178 1156 1178 0.96 13 15 0.0035 0.36 12.4 1.6 2 23 1185 1207 1184 1207 0.96 14 15 0.3 30 6.4 0.9 1 11 1214 1224 1214 1233 0.87 15 15 0.00025 0.025 16.1 2.9 3 23 1246 1266 1245 1267 0.95
Sequence Information
- Coding Sequence
- ATGGCGGATACATCAAGAAAAAGGTCGAGAAAGTCGAAATTAGTGCCTCGAGAGTGTGCTGTTGACGAAGATGATCTTGAATTGCAGGTCGAGACTGAGACCGAAGATCGCGACAAGTGTCGTGGAGCGACCGCTCAGTTCAAGAGAGTGATGGAAAACCAAGTAACGAAGCTGCTATTGGAGGAAGAAGAAGACGATGATTTgctcttatattattattacaaatacaAAACTGAAAGACGATTACCTATTAAggatttatatttaactagAGGTCAAGAAGGATCATTTTCGCTATTAGTAAAGAAGCACCTGATGTTTGATGACAATACATTCAGGAAGTATTTTCGGCTGAATAAAACACAGTTTGATTACGTAttaaatttactgaaaaaatcAATGCAAGAAAAGGGAAGAAtatcagtgaaagaaaaattagCACTAACTTTAAGattccTGGCGACTGGAGAAACATATGCTTCGCTATCATTCGAATTTCGTATATCACCTTCTTATATTTCACAAATAGTCAAAGAGGTGTTAAAACATTTAAAGACTGTTTTGGTGCCAATTTTTATGCCTGTTCCAAAAGAAAGTGATTTTAGGCTTGTATCTGAAGGATTTTGGGATAAATGGCAACTCCCCAATTGCACAGGTGCTATTGATGGGAAGCACGTTACAGAGCCGAAAATACCTAAAACCATAAAACAGCACACAAATAGACAACTAACAAAAAAAGTGGTAGTAAAAGCACCATGTAGTGAGTCAACCTTCTCAAAACCAGAAGAGGTCGACACGAGCGTCCTAAGAAAAATCAACGCAGCAGCTAGAGAAAATAATGAGCcacaaactaaaatatcgcCAAGAAAGTTCGAGATTGACATTGAAATAGAATCATGTAACGATGGCAATAAATTTGAAAGGCTTGCTGGCGAAAAGCGTTTATCAGTATCTTCGAATGTTAAAGAAACGACAAAAGTAAGGGCCGAACCTATTGAACTTTCTAGAGAAATCATTCTTGATGCTGCCGAGAATATACTCCAAGGTTCGCCAGATATTGCTGATAAAGTACTAAATATATATGTTAGGAATACGATAGGGTATGAGCAGAAGAGCAATTTGGTACAGGAGTGGCATGAAAAGCGAATACAACGGACTTTAGATGAATGGCGTTCTTGGCAGTTCCGCAGTTTTCACAGAGAAGACCCTCTTTTCTACAAATGCTATATCTGTACGCGGTCCTGGTGGCATTTATCAGACTTCCGCAACCATTTGTCTTCGACACATACCAATGATTTATTGGTTAAAATAGCTttggaaaaatacaaaatgcatgAAGCCAATTTGGTAGCGTACCACCGAAAACTTgttgatataaaaaatatatatacagaaGGACTTTGTTACCGATGCGGTAAGGATTATGGTGCTCACGAGTTAGAATCGAGGTTCCAggagaaatattataaaatagaaGGTtgcacaaaacagttttttagcTGTATGGGTCTAAGAAACCATTTATCTAGTTGTCCTGATTGTCAAAATGAGGATAAGCTGTTCAAATGTGATATATGTCAGTCAAGATTTAATACAGAGGAGGAATTAAATAGTCATTTAGTGTTGTCTCATTCCATTCGGTCTGATATACCAATAATGTCTCACTATAAGATCTGCAAGCGCTGCTCGGAGAGGTATTCTTgtcaatatttacataattgcgGACAAAAGGGACCTCATAGCGAGTGTCCACACTGTCTACAGAGTTTCTCAAACGTCATATCTTTGGAAGTTCATATGGAACGTTCAAATAAACCTTACAAATGTGAAGTGTGCCAAGCAGTGATGGCAtataactgtaaaaaatatgaacatatgTTAGAACATACGGACAAGTATATGTACGTACGGAAATGTGTGACGTGTAAGGGTTTGAACGTGTTTTTGAATAACGAAGATGCAATGAAACATCGGTTGTTGAAACATGAGTTCAAAGAAACGAAACGTCAGTGCTATTTTCCTAAAATTATAGTACCGTCGTCTTGTGTATATGAACGTTTAGAAGAATCAGAATGGAATGAACAAGTATCGGTACTGGAAGTACAAGGATCAGTACGGGAAGAAAAAGAATCGGTACTGGAAGAACAAGAATCAGCATGGGAAGAAAAAGAATCGGTACTAGAAGAACAAGAATCAGCATGGGAAGAAGAAGAATCCGTACTGGAAGAAGAATCAGTAATCAAAAGTGAAAGAGAATCTGTTTCAATATGTAAGCAGAAATTGTTACAAGCAGAGCTAGAATCGGCAACGGAATTTTTATTGGGAACTGTTATTGTCAAagAAGAACCAGAAGACTCAGAATACAGCCCAAgacttgtaattaaaaaagaatcatTCGAAGAATTTGAAAACCAAATGAATGGAGAAGAGAATCATACTGAGAATTATGGACACGAAACTAGTATCAAAGAAGAATATGTAGAGGAAGAATACGAAGAAGATATTATCAAACTGAACTTCAATATAGAAGACTTTTTAGTGAAACAAGAATCAATTCAAGAAGATGACGATTATACTGTAGAACAGGCAGAAGAGAACCAAGAATCAGAAAATGATGACACAGAAGAATCGAAAGAAGATTCCATGCTAGAACCAGAAGTTATTATAGAAGGGGATGATAGGAAAAGCAAAAAGCTATACAGATGTACTAAATGTGGATTTACAGCGAAGCATAAACAATATAGAAATCACGTAGACTATGACTGTGGCACCTACCCGATCAAGCATAAAATCTACACATgcacaaaatgtcaaaataaatttatgtctatgaaaaaatatttgacacatTTCAAAGAGCATGGCTACAAACACTTATCCTGTCCTGATTGCCTGAAACAATTCGACACATACACGCGTCTTGGCCAGCACCTACAACAGCacatcaaacaaaattttgtacgAGTAAAAATGATCACACATGCGGGCAAGGCAATGACAAAACCTGATTATCAATGCAAAAAATGCGGAAAAATCATAGTTTTTCGTAACTTTTTTGAGCATTGGGAGCTTCATATAAATGCTCAGCCGACGCATCCTATTAAAGTGACTTCGAGGCCAAAACATAAGCACGGTGAATTACATGAAACTATTATAAAGGAGTGCATAGccCGCTTACACAAACAGCCAAAGGAATGCAACCACTGCCATCGTTGTTTCAAACGGGTCAACGAATGCAAACGCCACATTATAGAACATCTATTAAGTGACGCTTACAACCAGAAACACATTTACAACGAGCTCAAATGCCAGATCTGTGAACAAGGGTTCGCTGTACCGGAGAAATATAAGCAACATATGCGAGACCATGCGTCCCTACCCGTGTATAAGTGTGAACTATGTGATCGTACATTCAGTGACTCAAGCAACTTTACAAAGCATAAAAAAGTGCATAATTTGAAAGTGATTGTCTGTGATTTGTGCGGTAAAAAGTTTCAGTCGAAAGTCTCTTTGCAGAGGCATATTGAGAAACACATGGAGACACAGCCGATTACCTGCAAGATTTGCAACAAAATCTTCTACTTCGATACTTCTTATCGACGCCATGTAAGATACTACCACGAAAAAACCATTATCGGTTACCGCTGCGTTATCTGCGGTAAACGTTTCAACTGTCTAAAATTGAAATGGGACCATATGTGGGATGAGCACAAGGAAAGAAAGCAGAAAGCGGACTGCCCTATATGCCACAAATCCTTCAGGAAGTATTCTGATGTACGACTCCATGCGAGAGTACACCATCTGACGGAAGTTTCCGTGTTAAATGTCAAAAAACAGGCAACGAAGTCCAATATAGATATTGATAATTACTTAGGAGATCCTACCAAGATAAAAGCCGGGAGAATGGAAACATTAGTTGTgtatgattcagattga
- Protein Sequence
- MADTSRKRSRKSKLVPRECAVDEDDLELQVETETEDRDKCRGATAQFKRVMENQVTKLLLEEEEDDDLLLYYYYKYKTERRLPIKDLYLTRGQEGSFSLLVKKHLMFDDNTFRKYFRLNKTQFDYVLNLLKKSMQEKGRISVKEKLALTLRFLATGETYASLSFEFRISPSYISQIVKEVLKHLKTVLVPIFMPVPKESDFRLVSEGFWDKWQLPNCTGAIDGKHVTEPKIPKTIKQHTNRQLTKKVVVKAPCSESTFSKPEEVDTSVLRKINAAARENNEPQTKISPRKFEIDIEIESCNDGNKFERLAGEKRLSVSSNVKETTKVRAEPIELSREIILDAAENILQGSPDIADKVLNIYVRNTIGYEQKSNLVQEWHEKRIQRTLDEWRSWQFRSFHREDPLFYKCYICTRSWWHLSDFRNHLSSTHTNDLLVKIALEKYKMHEANLVAYHRKLVDIKNIYTEGLCYRCGKDYGAHELESRFQEKYYKIEGCTKQFFSCMGLRNHLSSCPDCQNEDKLFKCDICQSRFNTEEELNSHLVLSHSIRSDIPIMSHYKICKRCSERYSCQYLHNCGQKGPHSECPHCLQSFSNVISLEVHMERSNKPYKCEVCQAVMAYNCKKYEHMLEHTDKYMYVRKCVTCKGLNVFLNNEDAMKHRLLKHEFKETKRQCYFPKIIVPSSCVYERLEESEWNEQVSVLEVQGSVREEKESVLEEQESAWEEKESVLEEQESAWEEEESVLEEESVIKSERESVSICKQKLLQAELESATEFLLGTVIVKEEPEDSEYSPRLVIKKESFEEFENQMNGEENHTENYGHETSIKEEYVEEEYEEDIIKLNFNIEDFLVKQESIQEDDDYTVEQAEENQESENDDTEESKEDSMLEPEVIIEGDDRKSKKLYRCTKCGFTAKHKQYRNHVDYDCGTYPIKHKIYTCTKCQNKFMSMKKYLTHFKEHGYKHLSCPDCLKQFDTYTRLGQHLQQHIKQNFVRVKMITHAGKAMTKPDYQCKKCGKIIVFRNFFEHWELHINAQPTHPIKVTSRPKHKHGELHETIIKECIARLHKQPKECNHCHRCFKRVNECKRHIIEHLLSDAYNQKHIYNELKCQICEQGFAVPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLKVIVCDLCGKKFQSKVSLQRHIEKHMETQPITCKICNKIFYFDTSYRRHVRYYHEKTIIGYRCVICGKRFNCLKLKWDHMWDEHKERKQKADCPICHKSFRKYSDVRLHARVHHLTEVSVLNVKKQATKSNIDIDNYLGDPTKIKAGRMETLVVYDSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01093596;
- 90% Identity
- -
- 80% Identity
- -