Gspa009988.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438658.1:19366057-19386658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8 1.8e+02 4.0 5.4 2 23 234 259 230 259 0.85 2 10 9.6 9.7e+02 1.6 0.0 3 23 267 287 265 287 0.89 3 10 0.059 6 8.6 1.5 2 23 326 347 326 347 0.96 4 10 0.00026 0.027 16.0 1.0 1 23 352 374 352 374 0.96 5 10 1.2e-06 0.00012 23.4 0.5 3 23 382 403 380 403 0.95 6 10 0.016 1.6 10.4 8.7 2 21 410 429 409 430 0.94 7 10 1.1e-05 0.0011 20.3 0.7 2 23 439 460 438 460 0.96 8 10 8.7e-06 0.00088 20.7 3.9 1 23 466 488 466 488 0.98 9 10 0.00013 0.013 17.0 0.7 2 23 494 515 493 515 0.95 10 10 0.0093 0.94 11.1 3.6 1 23 521 546 521 546 0.96
Sequence Information
- Coding Sequence
- ATGTCTTTAATTAGTAAAAgggataacaaaattaaaatacgaaCGTGTCGAATATGTCTTGACGCAAATAGAGTTGATAATAATATGGTGATAATAGAATCGCAGAATGGATGGTTGAAACTTTTCGAGTTTTGTTTTGGATTcactttaaCTAGCCAAGACGAACCACGTTTGCTGTGCAAAATATGTGCCGAAAAGGTCAAAAGTTATGTTGAATTCAAGGAGAAATGCCATAAATCCCATAGTCTTTGGAAATCTGTGATTTCTGATGTGAAATGTTACGTAGTTAAACATCAAAACGGAGAAAATACCAACGAAAATGCCAATGATCCTGTTACaataaaaacgaaaattaaAGATGAAACATTTGATCCATATTTTGACAATGATACGCATTATTCTAATCATGATGACAATGATACTCATTATTCTAACCATGATGACAATGATACTCATTATTCCAACCAAGATGACAATGATACTCATTATTCTAACCAATATGACAATGAAATGGTTAATTTATCACCCACTGAAATTAAAATTGAGTTACACGAAGATGAAATCAAATCATGGAATGAtgaaaacaagaaaaataagGATTGTCTTAGAACAAAAGCTAATTCAAAACAGATTAATTGCAAAAGTAGTAACAGTAACGGCAGTGTAAAAAGTAAGGAAAAAGAAATTTACACTTGCACAAAGTGTAAAGTTAATTatgGCCTCTGTAATCTCAGTTTCTCCACTACTAAAGATGTTTGCATACATTTGAATGACCATTGGTCAAATAATGATTTAGCGTGCAAATTGTGTGATTTCGTAGGCGTCGACCTGGCTGCTATTGTTGTACATAGGTATTCACACTTTCCGCGCAATGATATGATAAATTTTTTATGCCACATCTGCGAAAAGAATAAACAATCATTGATGTCATTGCACTTTCACTATCGACGAGAGCATTTAAAGAAGTCTGGAGGGTATTGCTCGAGGTGCTATAAGGAATATAACACATTGCGTCTCTGGAAGAAACATGAATTGACCCACTGTGTTCGTAAGCATGTGTGTGATATTTGTGGACAAAGgttttattttaaatattctattAGAGCACACATTATTAATCATATGCGGCTAAATAAGAGCATTTGTGATATTTGCGGAAAAACTTTCACTCGCCAAAATTATTTGAAGGTACACAAAGAAACAGTTCACTGTGAAACGGGGCcattaaaatgttttcattGCAACCGAACATTTAAGAGTCAGTTTTGTCTAAACaagcatcataaaaatatagttaccagggagaaaaccttaaaatgtgaGGTGTGCCATAAGGCCTTTATCACTCCAAACACTTTGAAGTTGCATATGGTGATGCATAGCGACGAACGGTCTTATAGCTGTAACATTTGTGGCAGCAGtTACAAATATAAATCTCATCTGACGAATCACCAGCTGAAGCACTTTGGGGTTCTTTCCCAATGTTCGATCTGTGCGAAAACGTTTTCGGAGCCGAGGTCTTTAAAAAGGCATTCTTCAGTCCATACGGGTGTTCGGCAGCACAAATGTAACGTCACAAACTGCACGAAGACTTTCTATTCGAAGAAACTAATGTTGGCGCACTTAAAACTACGTCATAAAGATGAAAATGTCGGAGAAAAGTGA
- Protein Sequence
- MSLISKRDNKIKIRTCRICLDANRVDNNMVIIESQNGWLKLFEFCFGFTLTSQDEPRLLCKICAEKVKSYVEFKEKCHKSHSLWKSVISDVKCYVVKHQNGENTNENANDPVTIKTKIKDETFDPYFDNDTHYSNHDDNDTHYSNHDDNDTHYSNQDDNDTHYSNQYDNEMVNLSPTEIKIELHEDEIKSWNDENKKNKDCLRTKANSKQINCKSSNSNGSVKSKEKEIYTCTKCKVNYGLCNLSFSTTKDVCIHLNDHWSNNDLACKLCDFVGVDLAAIVVHRYSHFPRNDMINFLCHICEKNKQSLMSLHFHYRREHLKKSGGYCSRCYKEYNTLRLWKKHELTHCVRKHVCDICGQRFYFKYSIRAHIINHMRLNKSICDICGKTFTRQNYLKVHKETVHCETGPLKCFHCNRTFKSQFCLNKHHKNIVTREKTLKCEVCHKAFITPNTLKLHMVMHSDERSYSCNICGSSYKYKSHLTNHQLKHFGVLSQCSICAKTFSEPRSLKRHSSVHTGVRQHKCNVTNCTKTFYSKKLMLAHLKLRHKDENVGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -