Basic Information

Insect: Globia sparganii
Gene Symbol: -
Assembly: GCA_949316385.1
Location: OX438679.1:12389498-12391555[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00092 0.093 14.3 1.1 2 23 328 350 327 350 0.92

2 9 0.21 22 6.8 1.5 1 23 356 378 356 378 0.98

3 9 0.0035 0.36 12.4 0.1 1 21 412 432 412 433 0.92

4 9 0.0011 0.11 14.0 1.1 2 23 451 472 450 472 0.97

5 9 2.8e-05 0.0028 19.1 1.4 2 23 480 501 480 501 0.97

6 9 0.00084 0.085 14.4 2.7 1 23 507 529 507 529 0.96

7 9 3.9e-05 0.0039 18.6 5.5 1 23 535 557 535 557 0.98

8 9 3.4e-05 0.0034 18.8 1.6 2 23 564 585 563 585 0.96

9 9 2.5e-05 0.0025 19.2 1.5 1 23 591 614 591 614 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00092	0.093	14.3	1.1	2	23	328	350	327	350	0.92
2	9	0.21	22	6.8	1.5	1	23	356	378	356	378	0.98
3	9	0.0035	0.36	12.4	0.1	1	21	412	432	412	433	0.92
4	9	0.0011	0.11	14.0	1.1	2	23	451	472	450	472	0.97
5	9	2.8e-05	0.0028	19.1	1.4	2	23	480	501	480	501	0.97
6	9	0.00084	0.085	14.4	2.7	1	23	507	529	507	529	0.96
7	9	3.9e-05	0.0039	18.6	5.5	1	23	535	557	535	557	0.98
8	9	3.4e-05	0.0034	18.8	1.6	2	23	564	585	563	585	0.96
9	9	2.5e-05	0.0025	19.2	1.5	1	23	591	614	591	614	0.98

Sequence Information

Coding Sequence: ATGAATACTATACAAAATGTGTATTGTCGCCTTTGCGCAGAGTTAAAACCACCCATTGAACTCACAAACCTTCAGACTGACGAAGAAATGTGCCAGAAAGTCGTCAGTAAACTGTCAAGATTCAACATAGTGATGGATTTCCAGGAAAATATACTGCCAAAGACGGTATGCTTAATATGTGTAAAATCCTTAGAACAAGCATTTGCTTTCGTAACTGCCGTTGAACAGGCGCAGTCATTTCTAACTGACTTTATTCTGGTCCAAACCAGGTCTGTAAAAAATGATTCTTATGGAGAAATCATTTTTTATGCTCCATCAGGAGTTAATAAAGAAGTTTTTGACGTTAAGGTTGAAAACAGTCGTGATCCAATGGATGTAGATGATAAAGATGATGAAGAATTGGATAATGAGGATTTCTCTAATGTTCACAATGATACTGGTTACAATTTAGGCAGTGAAAATGTTCATACCAAGAGTATGGACACTAGTCAATATTCTTATGTTATTGTTGAAGAAAAAATTGGTATCAAAGATGAAATTGATAAATACACTGACGTAAATAAtgttaaatatattaaagaaaatgaATCTCTTAATTTTAGTAATGACTGTAGAGAGAATCAATACCCCAATGTCGGAGAAAATGATTTGAATAACAAAAACGCTAAACTACCCTCTGATTTGGAAGAAAAACTCAGGAAAGATATATTAATAATGGAACTCGATTCTGAACCACTCCCACCATTGAACAGTTCAGTTTATTCTAcagattacataaataaacaagatTATAGCACTATGGACATCAAAACTGTGGGTTCTGGTGAACCACATAAACGGAAACAACCCATTTGTAAACCAATTCCACCGAAACTTTTGGATACTACAGCGTATTCTGAAGAttacataaacaaacaaattaatagATTAAGCGTAGTACCTGtgcaatatctaaaaaagacatgGAGTGATTACGAATGGAAGTGTTCTCACTGCGGAACACTATTCTCAAATATTGAAGAGCTACAGAAGCATTCAATGCTTTACCATAATACTTGCAACGCTTACCAATGCACTGattgcaaaattaaaaaacaacggCTCAATGCTTTCATCAAGCATGTCCGATCACACAGGAAATACTTGCATTATTCATGCTACAAATGCTTTGAGAAATTCCCTAAAATGATGGAAACCATACATCATAAGACAAAAATCCACGAGAACTCCAAACACGTTTGCTTAGGATGCAACATTCCTTTTTCCAATAACACCGAATTAGAAGAACATGCCAATAAGTATTACAATATTCTATGGAGACAGAAAACATTTATCAATAGTGATAATTTAACTTGTGGTACATGCAATAAGGTTTGTGCAAATATTACCGCTTTGAGGAACCATTTGAATAGACACAAAGAAAAGAAACGAGACCGTGTCTGTGACAGATGTGGCAAATGTTTCGATAGTGAACCCAGTTTAAGAACTCACATGGACACACATATCGAAAAGATTTTATATCATTGTGAAATTTGTAAAACTACCTTCAAAACTGTATATTCACTCCGATACCACGCGAGCATACACTCTGGCATCAAACCGTTCACGTGTGACGTCTGCAGTAAGTGTTTTAGGACCAGAAGTCAAATTACAAATCACATGAAATTCCACACAGACTATTTTCCTATTACTTGCACagtttgtaacaaaaaatttcGTACGGAcacttatttacaaaatcatATGCTTCAGCACACTGGAGAGAAACCGTTTTCTTGTAACATTTGCCCGAGAGACTTCACAAACATGGCCAATCGCAACAAACATATGAGACGTAGACATGGTATTGAGATGGGAAAGAAGAGACAACCTATTATAAAACAGCAAACACCTGGTGACCCGACTTCCTCTGGCCTGGCTACCGAAGAACCTAAATTTGCAGATCTAGACAAAATGAATGaatggaaaaacaaaataatggaaCATAGAAAAAGTCAAAGGGCAAACAACAAGCTTAAAAAAGAGAAAGTGGTTAGCAAGGAATGCAACgaaaattga
Protein Sequence: MNTIQNVYCRLCAELKPPIELTNLQTDEEMCQKVVSKLSRFNIVMDFQENILPKTVCLICVKSLEQAFAFVTAVEQAQSFLTDFILVQTRSVKNDSYGEIIFYAPSGVNKEVFDVKVENSRDPMDVDDKDDEELDNEDFSNVHNDTGYNLGSENVHTKSMDTSQYSYVIVEEKIGIKDEIDKYTDVNNVKYIKENESLNFSNDCRENQYPNVGENDLNNKNAKLPSDLEEKLRKDILIMELDSEPLPPLNSSVYSTDYINKQDYSTMDIKTVGSGEPHKRKQPICKPIPPKLLDTTAYSEDYINKQINRLSVVPVQYLKKTWSDYEWKCSHCGTLFSNIEELQKHSMLYHNTCNAYQCTDCKIKKQRLNAFIKHVRSHRKYLHYSCYKCFEKFPKMMETIHHKTKIHENSKHVCLGCNIPFSNNTELEEHANKYYNILWRQKTFINSDNLTCGTCNKVCANITALRNHLNRHKEKKRDRVCDRCGKCFDSEPSLRTHMDTHIEKILYHCEICKTTFKTVYSLRYHASIHSGIKPFTCDVCSKCFRTRSQITNHMKFHTDYFPITCTVCNKKFRTDTYLQNHMLQHTGEKPFSCNICPRDFTNMANRNKHMRRRHGIEMGKKRQPIIKQQTPGDPTSSGLATEEPKFADLDKMNEWKNKIMEHRKSQRANNKLKKEKVVSKECNEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00667871;
90% Identity: -
80% Identity: -